Affinage

PHETA2

Sesquipedalian-2 · UniProt Q6ICB4

Length
259 aa
Mass
28.3 kDa
Annotated
2026-06-10
9 papers in source corpus 1 papers cited in narrative 1 extracted findings
Cross-family judge vs UniProt: tie faithfulness: 2/2 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PHETA2 (FAM109B/IPIP27B) is an endocytic adaptor protein that interacts with the OCRL phosphatase and is required for endosomal endocytosis, ciliogenesis, and craniofacial development in renal and cartilage tissues (PMID:32152089). Loss of both zebrafish pheta1 and pheta2 orthologs dysregulates cathepsin K activity, leading to accumulation of type II collagen, an immature cartilage extracellular matrix marker, in craniofacial cartilages; pharmacological inhibition of cathepsin K rescues this craniofacial phenotype (PMID:32152089). Beyond this single in vivo study, no further mechanistic detail for PHETA2 has been characterized in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 1 step
  1. 2020 High

    Established PHETA2 as an OCRL-interacting endocytic adaptor whose loss links impaired endocytosis and ciliogenesis to a defined cathepsin K–collagen axis in craniofacial cartilage, placing it in a mechanistic pathway rather than mere association.

    Evidence Zebrafish pheta1/pheta2 double knockouts with renal endocytosis and ciliogenesis assays, type II collagen and cathepsin K immunostaining, cathepsin K inhibitor rescue, and patient-variant expression

    PMID:32152089

    Open questions at the time
    • Direct biochemical demonstration of how PHETA2 binding to OCRL regulates cathepsin K activity is not resolved
    • Functional separation of PHETA2 from its paralog pheta1 is not established, as phenotypes derive from double knockouts
    • Subcellular localization and structural basis of the PHETA2–OCRL interaction are not characterized

Open questions

Synthesis pass · forward-looking unresolved questions
  • How PHETA2 mechanistically couples endosomal trafficking to cathepsin K regulation, and whether it acts non-redundantly with pheta1 in mammals, remains unresolved.
  • No mammalian loss-of-function or rescue data
  • No direct substrate or trafficking-cargo identification
  • No structural model of the adaptor function

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060090 molecular adaptor activity 1
Localization
GO:0005768 endosome 1
Pathway
R-HSA-1266738 Developmental Biology 1 R-HSA-5653656 Vesicle-mediated transport 1
Partners

Evidence

Reading pass · 1 per-paper finding extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2020 PHETA2 (FAM109B/IPIP27B) functions as an endocytic adaptor protein that interacts with the OCRL protein product (mutated in Lowe syndrome) and is required for endocytosis and ciliogenesis in renal tissues, as well as craniofacial development including chondrocyte differentiation. Loss of both zebrafish pheta1 and pheta2 orthologs caused dysregulation of cathepsin K, leading to increased abundance of type II collagen (immature cartilage ECM marker) in craniofacial cartilages; cathepsin K inhibition rescued the craniofacial phenotype in double mutants. Zebrafish genetic knockouts of pheta1 and pheta2 orthologs; endocytosis assays in renal tissue; ciliogenesis assays; immunostaining for type II collagen and cathepsin K; pharmacological rescue with cathepsin K inhibitor; expression of patient-specific PHETA1 R6C variant in zebrafish Disease models & mechanisms High 32152089

Source papers

Stage 0 corpus · 9 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2023 Ranking Breast Cancer Drugs and Biomarkers Identification Using Machine Learning and Pharmacogenomics. ACS pharmacology & translational science 29 36926455
2021 Identification of genetic variants influencing methylation in brain with pleiotropic effects on psychiatric disorders. Progress in neuro-psychopharmacology & biological psychiatry 17 34637873
2015 Whole exome sequencing in a case of sporadic multiple meningioma reveals shared NF2, FAM109B, and TPRXL mutations, together with unique SMARCB1 alterations in a subset of tumor nodules. Cancer genetics 14 25981829
2020 Longitudinal genetic studies of cognitive characteristics. Vavilovskii zhurnal genetiki i selektsii 10 33659785
2020 Deficiency in the endocytic adaptor proteins PHETA1/2 impairs renal and craniofacial development. Disease models & mechanisms 7 32152089
2024 The immune cells have complex causal regulation effects on cancers. International immunopharmacology 5 38710118
2024 FAM109B plays a tumorigenic role in low-grade gliomas and is associated with tumor-associated macrophages (TAMs). Journal of translational medicine 5 39256832
2023 Identification of genetic variants associated with anterior cruciate ligament rupture and AKC standard coat color in the Labrador Retriever. BMC genomic data 5 37884875
2018 Modeling, dynamics and phosphoinositide binding of the pleckstrin homology domain of two novel PLCs: η1 and η2. Journal of molecular graphics & modelling 2 30193228

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