Affinage

PDE2A

cGMP-dependent 3',5'-cyclic phosphodiesterase · UniProt O00408

Length
941 aa
Mass
105.7 kDa
Annotated
2026-04-29
23 papers in source corpus 12 papers cited in narrative 12 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PDE2A is a dual-substrate cyclic nucleotide phosphodiesterase that hydrolyzes both cAMP and cGMP, with its catalytic activity allosterically stimulated by cGMP binding to its GAF-B domain, enabling it to function as a molecular switch that couples cGMP signals to cAMP degradation in neurons, cardiomyocytes, and endothelial cells (PMID:15938621, PMID:29392776, PMID:26178667). The PDE2A3 splice variant is targeted to synaptic membranes through sequential N-terminal myristoylation at Gly2 and palmitoylation at Cys5, and PDE2A acts presynaptically in hippocampal and striatal circuits to regulate cAMP/PKA signaling downstream of NO/cGMP inputs (PMID:19632989, PMID:26178667, PMID:40412662). PDE2A knockout in mice causes embryonic lethality due to hepatoblast apoptosis driven by cAMP/ICER-mediated Bcl2 downregulation, and haploinsufficiency produces disproportionate cGMP elevation with compensatory nNOS upregulation in striatum (PMID:32326334, PMID:39733958). A homozygous loss-of-function missense mutation (p.Asp480Gly) in the GAF-B domain causes early-onset hereditary chorea, establishing PDE2A as essential for normal striatal function (PMID:29392776).

Mechanistic history

Synthesis pass · year-by-year structured walk · 10 steps
  1. 1999 Medium

    Establishing where PDE2A protein is expressed at the cellular level resolved that it is selectively present in venous/capillary but not arterial endothelium, implying a tissue-specific role in cyclic nucleotide signaling at vascular barriers.

    Evidence Immunocytochemistry and in situ hybridization in cardiac and renal tissue sections

    PMID:10375378

    Open questions at the time
    • No functional consequence of endothelial expression was demonstrated
    • Neuronal versus endothelial relative contributions to whole-organ PDE2A activity were not assessed
  2. 2005 High

    Solving the crystal structure of the PDE2A catalytic domain at 1.7 Å identified active-site residues (Asp811, Gln812, Ile826, Tyr827) that determine substrate and inhibitor selectivity, providing the first atomic-level explanation for PDE2A's dual cAMP/cGMP hydrolysis and a framework for selective inhibitor design.

    Evidence X-ray crystallography of catalytic domain plus mutagenesis with enzymatic activity assays using wheat germ in vitro translation

    PMID:15938621

    Open questions at the time
    • Full-length structure including GAF domains was not resolved
    • Structural basis of cGMP-mediated allosteric activation remained unknown
  3. 2009 High

    Determining how PDE2A reaches synaptic membranes revealed a two-step lipid-modification mechanism — myristoylation at Gly2 for membrane association and palmitoylation at Cys5 for plasma membrane targeting — explaining how the enzyme is positioned to regulate local cyclic nucleotide pools at synapses.

    Evidence Mutagenesis of acylation sites, [³H]myristate incorporation, fluorescence microscopy in HEK293/PC12 cells and hippocampal neurons, subcellular fractionation

    PMID:19632989

    Open questions at the time
    • Whether palmitoylation is dynamically regulated to control PDE2A redistribution was not tested
    • Mechanism applies to PDE2A3; membrane targeting of PDE2A1 and PDE2A2 was not addressed
  4. 2013 Medium

    Pharmacological dissection in gastric mucous cells demonstrated that PDE2A acts as a cGMP-dependent brake on cAMP accumulation, restraining PKA-driven Ca²⁺-regulated exocytosis — extending the enzyme's cGMP-to-cAMP cross-talk function beyond neurons.

    Evidence Selective PDE2 inhibitor BAY-60-7550, cAMP/cGMP measurements, exocytosis frequency assays in antral mucosae

    PMID:23449671

    Open questions at the time
    • Genetic confirmation of PDE2A identity (vs. other PDE2 family members) in this tissue was not provided
    • Physiological source of cGMP stimulating PDE2A in vivo was not identified
  5. 2015 Medium

    Electrophysiological evidence in hippocampal slices showed that PDE2A inhibition alters paired-pulse facilitation only when both adenylyl and guanylyl cyclases are co-stimulated, establishing that PDE2A functions presynaptically to integrate cGMP signals into cAMP-dependent neurotransmitter release.

    Evidence Paired-pulse facilitation in acute rat hippocampal slices with selective PDE2A inhibitor PF-999 and pharmacological cyclase stimulation

    PMID:26178667

    Open questions at the time
    • Identity of the presynaptic cGMP source (NO-sGC vs. natriuretic peptide-pGC) was not determined
    • Effect on specific neurotransmitter release (glutamate vs. GABA) was not resolved
  6. 2018 High

    Discovery of a homozygous GAF-B domain mutation (p.Asp480Gly) causing early-onset hereditary chorea linked PDE2A enzymatic activity to striatal circuit integrity, providing the first direct genetic evidence that PDE2A loss-of-function causes human neurological disease.

    Evidence Whole-exome sequencing in affected family, enzymatic activity assay of recombinant Asp480Gly mutant

    PMID:29392776

    Open questions at the time
    • Number of families carrying PDE2A mutations was limited
    • Mechanism by which reduced PDE2A activity specifically disrupts striatal (chorea-relevant) versus other circuits was not defined
  7. 2020 Medium

    PDE2A knockout mouse lethality traced to hepatoblast apoptosis via a cAMP→ICER→Bcl2 axis revealed an essential developmental role outside the nervous system, demonstrating that PDE2A-dependent cAMP restraint is required for fetal liver organogenesis and hematopoietic niche maintenance.

    Evidence PDE2A knockout mouse, cAMP measurement, Western blot for ICER and Bcl2, apoptosis assays, in vitro hematopoietic differentiation

    PMID:32326334

    Open questions at the time
    • Whether the hepatic phenotype is cell-autonomous was not shown by conditional knockout
    • Contribution of cGMP elevation versus cAMP elevation to the lethality was not separated
  8. 2023 Medium

    Isoform-specific CRISPR knockouts in cardiomyocytes showed that PDE2A2 is the sole neonatal isoform while adults express all three (A1, A2, A3), each with distinct contributions to cAMP compartmentalization, revealing developmental isoform switching and functional non-redundancy.

    Evidence CRISPR/Cas9 isoform-specific knockout via adenovirus in primary rat cardiomyocytes, FRET-based cAMP biosensors

    PMID:37296663

    Open questions at the time
    • In vivo cardiac phenotype of isoform-specific loss was not assessed
    • Subcellular targeting determinants distinguishing PDE2A1 from PDE2A2 in cardiomyocytes were not defined
  9. 2024 Medium

    Haploinsufficient mice revealed that 50% reduction in PDE2A disproportionately elevates cGMP over cAMP in striatum, with compensatory nNOS upregulation, indicating a homeostatic nNOS/NO/cGMP feedback loop that partially buffers cAMP when PDE2A activity is reduced.

    Evidence PDE2A+/− mice, cyclic nucleotide quantification, Western blot, immunohistochemistry for nNOS, behavioral testing

    PMID:39733958

    Open questions at the time
    • Whether nNOS upregulation is transcriptional or post-translational was not determined
    • Behavioral consequences of haploinsufficiency were mild; relevance to human heterozygous carriers is unclear
  10. 2025 Medium

    Live biosensor imaging in a Parkinson's disease model demonstrated that NO-driven cGMP elevation activates PDE2A to suppress D1-receptor-driven cAMP/PKA hypersensitivity in dopamine-depleted striatal neurons, positioning PDE2A as a therapeutic target for L-DOPA-induced dyskinesia.

    Evidence Genetically encoded cAMP/PKA biosensors in striatal neurons, PDE2A pharmacological inhibition, 6-OHDA mouse model

    PMID:40412662

    Open questions at the time
    • Whether PDE2A activation can prevent dyskinesia in vivo was not tested
    • Direct measurement of PDE2A protein levels or activity changes after dopamine depletion was not performed

Open questions

Synthesis pass · forward-looking unresolved questions
  • Key unresolved questions include the full-length structure of PDE2A with GAF domains in both cGMP-free and cGMP-bound states, the identity of physiological cGMP sources driving PDE2A activation at specific synapses, and the mechanism by which PDE2A loss selectively produces striatal pathology despite broad expression.
  • No full-length PDE2A structure with GAF domains resolved
  • Physiological cGMP source at individual synapses not identified
  • Cell-type-specific conditional knockouts in brain not reported

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0016787 hydrolase activity 5 GO:0140299 molecular sensor activity 4
Localization
GO:0005886 plasma membrane 2 GO:0005829 cytosol 1
Pathway
R-HSA-112316 Neuronal System 3

Evidence

Reading pass · 12 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2009 PDE2A splice variant 3 (PDE2A3) is targeted to synaptic membranes via dual acylation: myristoylation at Gly2 is required for membrane binding, while palmitoylation at Cys5 (and to a lesser extent Cys11) is required for plasma membrane targeting and prevents retention in ER/Golgi. Mutation of Gly2 completely solubilizes PDE2A3; mutation of palmitoylated cysteines partially solubilizes the enzyme and causes ER/Golgi accumulation. Mutagenesis of acylation sites, [3H]myristate incorporation, fluorescence microscopy in HEK293 and PC12 cells, immunofluorescence in hippocampal neurons, subcellular fractionation The Journal of biological chemistry High 19632989
2005 Crystal structure of the catalytic domain of human PDE2A at 1.7 Å resolution identified active site residues Asp811, Gln812, Ile826, and Tyr827 as determinants of inhibitor and substrate selectivity, validated by in vitro translation of active-site mutants. X-ray crystallography (1.7 Å), wheat germ in vitro translation of mutants, enzymatic activity assays Biochemistry High 15938621
2018 A homozygous missense mutation (p.Asp480Gly) in the GAF-B domain of PDE2A severely decreases enzymatic activity of PDE2A and causes early-onset hereditary chorea, establishing that PDE2A enzymatic activity is required for normal striatal function. Whole-exome sequencing, functional enzymatic activity assay of mutant protein, in vitro characterization of p.Asp480Gly mutant Movement disorders High 29392776
2023 In cardiomyocytes, PDE2A2 is the sole isoform expressed in neonatal rat ventricular cardiomyocytes, whereas adult cardiomyocytes express all three PDE2A isoforms (A1, A2, A3), each contributing distinctly to regulation of cAMP dynamics as detected by live-cell imaging with cAMP biosensors. CRISPR/Cas9 isoform-specific knockout via adenoviral delivery, RT-PCR isoform analysis, live-cell FRET-based cAMP biosensor imaging in primary cardiomyocytes Cells Medium 37296663
2020 PDE2A knockout in mice is embryonic lethal due to liver developmental failure; loss of PDE2A increases intracellular cAMP, upregulates ICER, and downregulates anti-apoptotic Bcl2 in hepatoblasts, causing apoptosis and disruption of the liver hematopoietic niche. PDE2A knockout mouse model, morphological/cellular/molecular analyses, apoptosis assays, cAMP measurement, Western blot, in vitro hematopoietic differentiation assays International journal of molecular sciences Medium 32326334
2025 In striatal neurons, cGMP-stimulated PDE2A activity reduces excessive cAMP/PKA signaling driven by D1 receptor stimulation; NO donor-mediated cGMP elevation downregulates hypersensitive cAMP/PKA responses in a PDE2A-dependent manner in a 6-OHDA mouse model of Parkinson's disease. Genetically encoded cAMP and PKA biosensors in live striatal neurons, pharmacological activation/inhibition of PDE2A, 6-OHDA mouse model Neurobiology of disease Medium 40412662
2024 In PDE2A haploinsufficient mice, ~50% reduction in PDE2A protein and cGMP-hydrolyzing activity leads to disproportionate elevation of cGMP (153%) versus cAMP (16%), accompanied by compensatory upregulation of nNOS in striatal interneurons, suggesting a nNOS/NO/cGMP feedback loop compensating for reduced PDE2A-dependent cAMP hydrolysis. Heterozygous PDE2A+/- mouse model, Western blot, enzymatic activity assay, cyclic nucleotide measurement, immunohistochemistry, behavioral battery Neurobiology of disease Medium 39733958
2013 PDE2A in antral mucous cells degrades cAMP in a cGMP-dependent manner; inhibition of PDE2 (with BAY-60-7550) mimics PKG inhibitor effects by allowing cAMP accumulation during ACh stimulation, thereby increasing Ca2+-regulated exocytosis via PKA, demonstrating PDE2A acts as a brake on cAMP-driven mucin secretion. PDE2 selective inhibitor (BAY-60-7550), cGMP/cAMP measurements in antral mucosae, Western blot and immunohistochemistry for PDE2A, exocytosis frequency assays, PKA inhibitor control American journal of physiology. Gastrointestinal and liver physiology Medium 23449671
2015 PDE2A has a presynaptic mechanism of action in hippocampal CA1: combined stimulation of adenylyl cyclase (forskolin) and soluble guanylyl cyclase (BAY 41-8543) with PDE2A inhibition (PF-999) alters paired-pulse facilitation, indicating PDE2A regulates presynaptic cAMP hydrolysis in response to cGMP changes. Paired-pulse facilitation (PPF) in acute rat hippocampal slices, selective PDE2A inhibitor PF-999, pharmacological stimulation of adenylyl and guanylyl cyclases Synapse Medium 26178667
1999 PDE2A protein is selectively expressed in venous and capillary endothelial cells but not arterial endothelial cells in cardiac and renal tissue, as determined by immunocytochemistry and confirmed by in situ hybridization, suggesting a role in modulating cyclic nucleotide-mediated barrier function. Selective monoclonal antibodies, Western blot, immunocytochemistry, in situ hybridization The journal of histochemistry and cytochemistry Medium 10375378
2021 PDE2A suppresses Wnt/β-catenin signaling in glioma stem cells by inhibiting cAMP accumulation and GSK-3β phosphorylation, thereby modulating self-renewal; PDE2A overexpression suppressed stemness of patient-derived glioma stem-like cells in vitro and in orthotopic xenograft models. PDE2A overexpression in patient-derived glioma stem-like cells, sphere formation assays, orthotopic xenograft models, GSK-3β phosphorylation and cAMP measurement, bioinformatic pathway analysis International journal of biological sciences Low 34512162
2024 PDE2A mRNA localizes to neuronal dendrites in a non-diffusion-dependent manner consistent with active transport, and is organized into clusters potentially co-transported with other dendritically localized mRNAs, suggesting local translational regulation at synapses. Single-molecule fluorescence in situ hybridization (smFISH) in neurons, spatial distribution analysis bioRxivpreprint Low bio_10.1101_2024.07.18.602927

Source papers

Stage 0 corpus · 23 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
1999 Differential expression of the cyclic GMP-stimulated phosphodiesterase PDE2A in human venous and capillary endothelial cells. The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society 55 10375378
2018 A homozygous loss-of-function mutation in PDE2A associated to early-onset hereditary chorea. Movement disorders : official journal of the Movement Disorder Society 51 29392776
2009 Dual acylation of PDE2A splice variant 3: targeting to synaptic membranes. The Journal of biological chemistry 49 19632989
2005 Structural determinants for inhibitor specificity and selectivity in PDE2A using the wheat germ in vitro translation system. Biochemistry 44 15938621
2017 Design and Synthesis of Novel and Selective Phosphodiesterase 2 (PDE2a) Inhibitors for the Treatment of Memory Disorders. Journal of medicinal chemistry 31 28165743
2015 Inhibition of PDE2A, but not PDE9A, modulates presynaptic short-term plasticity measured by paired-pulse facilitation in the CA1 region of the hippocampus. Synapse (New York, N.Y.) 30 26178667
2021 miR-139/PDE2A-Notch1 feedback circuit represses stemness of gliomas by inhibiting Wnt/β-catenin signaling. International journal of biological sciences 29 34512162
2020 Phosphodiesterases PDE2A and PDE10A both change mRNA expression in the human brain with age, but only PDE2A changes in a region-specific manner with psychiatric disease. Cellular signalling 26 32119913
2016 Towards selective phosphodiesterase 2A (PDE2A) inhibitors: a patent review (2010 - present). Expert opinion on therapeutic patents 21 27321640
2018 Low-Concentration Oxygen/Ozone Treatment Attenuated Radiculitis and Mechanical Allodynia via PDE2A-cAMP/cGMP-NF-κB/p65 Signaling in Chronic Radiculitis Rats. Pain research & management 19 30651902
2009 A novel PDE2A reporter cell line: characterization of the cellular activity of PDE inhibitors. Molecular pharmaceutics 19 19049345
2022 PDE2A Inhibition Enhances Axonal Sprouting, Functional Connectivity, and Recovery after Stroke. The Journal of neuroscience : the official journal of the Society for Neuroscience 12 36163142
2020 PDE2A Is Indispensable for Mouse Liver Development and Hematopoiesis. International journal of molecular sciences 11 32326334
2023 A homozygous founder variant in PDE2A causes paroxysmal dyskinesia with intellectual disability. Clinical genetics 9 37317634
2013 A PKG inhibitor increases Ca(2+)-regulated exocytosis in guinea pig antral mucous cells: cAMP accumulation via PDE2A inhibition. American journal of physiology. Gastrointestinal and liver physiology 6 23449671
2021 Shear stress-induced MMP1 and PDE2A expressions in coronary atherosclerosis. Bratislavske lekarske listy 4 33729823
2023 CRISPR/Cas9 Knock-Out in Primary Neonatal and Adult Cardiomyocytes Reveals Distinct cAMP Dynamics Regulation by Various PDE2A and PDE3A Isoforms. Cells 3 37296663
2022 Radiosynthesis and Preclinical Evaluation of an 18F-Labeled Triazolopyridopyrazine-Based Inhibitor for Neuroimaging of the Phosphodiesterase 2A (PDE2A). Pharmaceuticals (Basel, Switzerland) 3 36297384
2016 Identification of lead BAY60-7550 analogues as potential inhibitors that utilize the hydrophobic groove in PDE2A: a molecular dynamics simulation study. Journal of molecular modeling 3 27966018
2024 Haploinsufficiency of PDE2A causes in mice increased exploratory behavior associated with upregulation of neural nitric oxide synthase in the striatum. Neurobiology of disease 1 39733958
2026 Metabolic profiling of the TME uncovers the contrasting impacts of CKMT2 and PDE2A in CRC progression and therapeutic response. Frontiers in pharmacology 0 41878336
2026 Anacardic Acid Inhibits Pde2a to Enhance Colonic Epithelial Barrier Integrity in the Improvement of Diabetic Cardiomyopathy. Molecular nutrition & food research 0 41988816
2025 Activation of PDE2A moderates pathologically high cAMP/PKA responses to dopamine in dyskinetic mice. Neurobiology of disease 0 40412662