Affinage

PDCD7

Programmed cell death protein 7 · UniProt Q8N8D1

Length
485 aa
Mass
54.7 kDa
Annotated
2026-04-29
10 papers in source corpus 2 papers cited in narrative 2 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PDCD7 transcriptionally activates E-cadherin expression by binding a GC-box element in the E-cadherin promoter; CRISPR knockout of PDCD7 increases in vitro oncogenicity and neck nodal metastasis in mice while reducing E-cadherin levels, and PDCD7 is itself a direct target of miR-134 (PMID:29971778). Overexpression of the mouse ortholog (ES18) in T-cell lymphoma promotes apoptotic cell death, though the molecular pathway linking PDCD7 to apoptosis has not been defined (PMID:10037816).

Mechanistic history

Synthesis pass · year-by-year structured walk · 2 steps
  1. 1999 Low

    Initial cloning revealed that PDCD7 overexpression could promote apoptosis in T-cell lymphoma and that its transcript was selectively regulated by apoptotic stimuli, establishing a first link between PDCD7 and programmed cell death without placing it in a defined pathway.

    Evidence Transient overexpression in mouse T-cell lymphoma with apoptosis readout; transcript regulation during dexamethasone- and staurosporine-induced apoptosis

    PMID:10037816

    Open questions at the time
    • Overexpression-only phenotype without loss-of-function validation or pathway placement
    • No molecular mechanism linking PDCD7 to apoptotic signaling identified
    • Single lab observation not independently confirmed
  2. 2018 Medium

    PDCD7 was shown to act as a transcriptional activator of E-cadherin through a GC-box in its promoter and to suppress metastasis in vivo, while being itself regulated by miR-134, establishing a miR-134–PDCD7–E-cadherin axis in cancer progression.

    Evidence Luciferase reporter assays with wild-type/mutant constructs, CRISPR knockout, in vivo mouse nodal metastasis model, promoter GC-box functional analysis

    PMID:29971778

    Open questions at the time
    • Findings originate from a single laboratory; independent replication is lacking
    • Mechanism by which PDCD7 binds or activates the GC-box (direct DNA binding vs. cofactor recruitment) not resolved
    • Relationship between the E-cadherin–activating function and the earlier apoptotic role remains unexplored

Open questions

Synthesis pass · forward-looking unresolved questions
  • It remains unknown whether PDCD7 directly binds DNA, what structural domains mediate its transcriptional activity, and whether its pro-apoptotic and tumor-suppressive functions reflect the same or distinct molecular mechanisms.
  • No structural or biochemical characterization of PDCD7 protein
  • No identified protein domains mediating transcriptional activation
  • No interactome or proteomics data placing PDCD7 in a defined complex

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0140110 transcription regulator activity 1
Pathway
R-HSA-5357801 Programmed Cell Death 2

Evidence

Reading pass · 2 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1999 Mouse ES18 (PDCD7) overexpression in T-cell lymphoma increased apoptotic cell death, and its transcript was selectively regulated during dexamethasone- and staurosporine-induced apoptosis, suggesting a role in specific apoptotic processes in T-cells. Transient overexpression in mouse T-cell lymphoma with apoptosis readout; transcript regulation by apoptotic stimuli Nucleic acids research Low 10037816
2018 PDCD7 is a direct target of miR-134; PDCD7 transcriptionally activates E-cadherin expression via a GC-box in its promoter, and PDCD7 knockout increases in vitro oncogenicity and neck nodal metastasis in mice while reducing E-cadherin levels. Luciferase reporter assays with wild-type and mutant constructs; CRISPR knockout; in vivo mouse metastasis model; promoter GC-box functional analysis International journal of cancer Medium 29971778

Source papers

Stage 0 corpus · 10 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2005 The generalized transducing Salmonella bacteriophage ES18: complete genome sequence and DNA packaging strategy. Journal of bacteriology 170 15659686
2018 miR-134 targets PDCD7 to reduce E-cadherin expression and enhance oral cancer progression. International journal of cancer 53 29971778
2005 The U11/U12 snRNP 65K protein acts as a molecular bridge, binding the U12 snRNA and U11-59K protein. The EMBO journal 52 16096647
1972 Mapping of rfa Genes in Salmonella typhimurium by ES18 and P22 Transduction and by Conjugation. Journal of bacteriology 44 16559160
2008 The U11-48K protein contacts the 5' splice site of U12-type introns and the U11-59K protein. Molecular and cellular biology 41 18347052
1977 Genetics of sensitivity of Salmonella species to colicin M and bacteriophages T5, T1, and ES18. Journal of bacteriology 39 324978
1976 Iron transport in Salmonella typhimurium LT-2: prevention, by ferrichrome, of adsorption of bacteriophages ES18 and ES18.h1 to a common cell envelope receptor. Journal of bacteriology 20 783114
1997 Sequence comparison of the genes for immunity, DNA replication, and cell lysis of the P22-related Salmonella phages ES18 and L. Gene 19 9300826
1999 Characterization of a novel mouse cDNA, ES18, involved in apoptotic cell death of T-cells. Nucleic acids research 16 10037816
1988 Esterase-18 (ES-18) of the house mouse (Mus musculus): biochemical characterization and genetics of an allozyme system linked to chromosome 19. Biochemical genetics 7 3242498