Affinage

OLFM1

Noelin · UniProt Q99784

Length
485 aa
Mass
55.3 kDa
Annotated
2026-06-10
73 papers in source corpus 6 papers cited in narrative 6 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 4/4 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

OLFM1 (Noelin-1) is a secreted glycoprotein that acts across vertebrate neural development and mature synaptic organization, functioning through extracellular oligomeric assembly (PMID:10783240, PMID:37591201). In the embryo it is expressed in a graded pattern in the closing neural tube, dorsal neural folds, and migrating neural crest, and gain-of-function expands neural crest emigration while prolonging neural tube competence to generate neural crest (PMID:10783240); its sensory-neurogenic activity strictly requires secretion, as only secreted forms activate sensory marker expression and amplify noggin-induced neural induction (PMID:11784068). In the mature nervous system, OLFM1 tetramers assemble with the extracellular domains of AMPA receptors and interconnect them into a network with Neurexin1, Neuritin1, and Seizure 6-like, and loss of Noelins 1-3 reduces synaptic and dendritic AMPARs and abolishes activity-dependent synaptic plasticity (PMID:37591201). Cryo-EM of native calcium-permeable AMPARs shows OLFM1 binds specifically the GluA4 subunit at the B and D positions, stabilizing the amino-terminal domain layer and forming dimeric AMPAR assemblies without altering gating, providing a structural basis for AMPAR clustering (PMID:40550474).

Mechanistic history

Synthesis pass · year-by-year structured walk · 6 steps
  1. 2000 Medium

    Established OLFM1 as a secreted regulator of neural crest production, answering whether the neural-tube-expressed glycoprotein actively controls neural crest output.

    Evidence Retroviral overexpression in chick embryos with in situ hybridization and immunohistochemistry

    PMID:10783240

    Open questions at the time
    • No receptor or downstream effector identified
    • Loss-of-function not tested
    • Molecular mechanism of competence extension unknown
  2. 2001 Medium

    Demonstrated that secretion is required for the sensory-neurogenic function, distinguishing an extracellular mode of action from intracellular activity.

    Evidence mRNA microinjection of secreted vs. non-secreted forms in Xenopus animal caps with RT-PCR for neural markers

    PMID:11784068

    Open questions at the time
    • Multiunit complex composition inferred, not resolved
    • No binding partner identified
    • Relationship to noggin amplification mechanism unresolved
  3. 2002 Low

    Confirmed conserved neural and neural crest expression across vertebrates, supporting a generalizable developmental role.

    Evidence In situ hybridization across mouse, frog, and avian embryos

    PMID:12385760

    Open questions at the time
    • Localization only; no functional consequence tested in this study
    • Limb ZPA expression not functionally linked
  4. 2014 Low

    Linked OLFM1 disruption to a neuropsychiatric phenotype, raising the question of dosage- or fusion-driven contributions.

    Evidence Mate-pair breakpoint sequencing and RT-PCR of fusion transcripts in a Tourette/OCD/ADHD carrier with brain-region expression analysis

    PMID:25595337

    Open questions at the time
    • Single case without functional validation
    • Haploinsufficiency vs. dominant-negative mechanism not distinguished
    • No causal model
  5. 2023 High

    Defined the mature-nervous-system function: OLFM1 tetramers organize an extracellular network that anchors AMPARs and is required for synaptic plasticity.

    Evidence Reciprocal Co-IP, mass spectrometry interactome, Noelin1-3 triple knockout mice, electrophysiology, AMPAR imaging, and plasticity assays

    PMID:37591201

    Open questions at the time
    • Redundancy among Noelins 1-3 not separated to OLFM1 alone
    • How the network couples to plasticity signaling unresolved
    • Developmental vs. synaptic functions not mechanistically connected
  6. 2025 High

    Provided the structural mechanism: OLFM1 binds the GluA4 subunit at defined positions to stabilize the ATD layer and bridge AMPARs into dimeric assemblies.

    Evidence Cryo-EM of immunoaffinity-purified native calcium-permeable AMPARs from rat cerebella

    PMID:40550474

    Open questions at the time
    • Network with Neurexin1/Neuritin1/Sez6l not structurally resolved
    • Functional consequence of GluA4 selectivity in vivo not addressed
    • Gating shown unaffected but trafficking effects not structurally defined

Open questions

Synthesis pass · forward-looking unresolved questions
  • How the embryonic neural-crest/neurogenic activity and the mature AMPAR-anchoring function share a common molecular mechanism, and what cell-surface receptors mediate the developmental signal, remains unresolved.
  • No developmental receptor identified
  • Unified mechanism across life stages uncharacterized

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0005198 structural molecule activity 2 GO:0060090 molecular adaptor activity 2
Localization
GO:0005576 extracellular region 3
Pathway
R-HSA-112316 Neuronal System 2 R-HSA-1266738 Developmental Biology 2
Complex memberships
AMPA receptor complex (OLFM1-GluA1-GluA4)

Evidence

Reading pass · 6 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2000 Noelin-1 (OLFM1) is a secreted glycoprotein expressed in a graded pattern in the closing neural tube and subsequently in dorsal neural folds and migrating neural crest. Overexpression via recombinant retroviruses in avian embryos caused excess neural crest emigration and extended the time the neural tube was competent to generate and regenerate neural crest cells, establishing OLFM1 as a secreted regulator of neural crest production. Retroviral overexpression in chick embryos, in situ hybridization, immunohistochemistry Nature cell biology Medium 10783240
2001 In Xenopus, Noelin-1 (OLFM1) is a secreted glycoprotein that likely forms large multiunit complexes. Only secreted forms of the protein (not intracellular forms) could activate sensory marker expression, while all forms could induce early neurogenesis, demonstrating that the secreted localization of OLFM1 is required for its sensory neurogenic function. Co-expression of secreted Noelin-1 with noggin amplified noggin-induced neural marker expression, and Noelin-1 caused premature expression of neuronal differentiation markers in animal caps. mRNA microinjection in Xenopus animal caps, overexpression of secreted vs. non-secreted forms, RT-PCR for neural markers Developmental biology Medium 11784068
2002 Mouse Noelin-1/2 (OLFM1) is expressed in the neural plate, neural crest, and cranial ganglia at E8-10, and later prominently in brain tissue and in the zone of polarizing activity in the limb, confirming conserved neural expression across vertebrates. In situ hybridization, comparison across mouse, frog, and avian embryos Mechanisms of development Low 12385760
2023 Noelin (OLFM1) tetramers tightly assemble with the extracellular domains of AMPA receptors (AMPARs) and interconnect them in a network-like configuration with secreted and membrane-anchored proteins including Neurexin1, Neuritin1, and Seizure 6-like. Knockout of Noelins 1-3 profoundly reduced AMPARs in synapses onto excitatory and inhibitory interneurons, decreased their density and clustering in dendrites, and abolished activity-dependent synaptic plasticity, establishing the Noelin-organized extracellular network as a determinant of constitutive and context-dependent AMPAR anchoring and synaptic plasticity. Co-immunoprecipitation, mass spectrometry interactome, Noelin1-3 triple knockout mice, electrophysiology, AMPAR density/clustering imaging, synaptic plasticity assays Neuron High 37591201
2025 Cryo-EM of immunoaffinity-purified native calcium-permeable AMPARs from rat cerebella resolved the structure of the NOE1 (OLFM1)-GluA1-GluA4 complex, showing that NOE1 specifically binds to the GluA4 subunit at the B and D positions and stabilizes the amino-terminal domain (ATD) layer without affecting gating properties. NOE1 forms dimeric AMPAR assemblies likely to engage in extracellular networks, providing a structural mechanism for AMPAR clustering in synaptic environments. Cryo-electron microscopy of immunoaffinity-purified native CP-AMPARs, structural analysis of NOE1-AMPAR complex Nature High 40550474
2014 A chromosomal translocation t(3;9)(q25.1;q34.3) truncated the OLFM1 gene and produced fusion transcripts in carriers with Gilles de la Tourette syndrome, OCD, and ADHD. OLFM1 expression was found to be high in GTS-related human brain regions, and haploinsufficiency or dominant-negative fusion transcripts were identified as potential mechanisms contributing to the neuropsychiatric phenotype. Mate-pair sequencing of translocation breakpoints, RT-PCR identification of fusion transcripts, expression analysis in human brain regions Psychiatry research Low 25595337

Source papers

Stage 0 corpus · 73 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
1983 Two promoters of different strengths control the transcription of the mouse alpha-amylase gene Amy-1a in the parotid gland and the liver. Cell 466 6190572
2000 Noelin-1 is a secreted glycoprotein involved in generation of the neural crest. Nature cell biology 116 10783240
1984 Termination of transcription in the mouse alpha-amylase gene Amy-2a occurs at multiple sites downstream of the polyadenylation site. Cell 114 6091898
1998 AMY-1, a novel C-MYC binding protein that stimulates transcription activity of C-MYC. Genes to cells : devoted to molecular & cellular mechanisms 74 9797456
1995 Molecular evolution of the duplicated Amy locus in the Drosophila melanogaster species subgroup: concerted evolution only in the coding region and an excess of nonsynonymous substitutions in speciation. Genetics 66 8536970
2001 The secreted glycoprotein Noelin-1 promotes neurogenesis in Xenopus. Developmental biology 59 11784068
1988 Naturally occurring variation in the restriction map of the amy region of Drosophila melanogaster. Genetics 58 17246437
2022 Complement C3 inhibition in severe COVID-19 using compstatin AMY-101. Science advances 50 35977025
1985 The two promoters of the mouse alpha-amylase gene Amy-1a are differentially activated during parotid gland differentiation. Cell 47 3872721
2013 AMY-tree: an algorithm to use whole genome SNP calling for Y chromosomal phylogenetic applications. BMC genomics 46 23405914
1995 Evolutionary relationships and sequence variation of alpha-amylase variants encoded by duplicated genes in the Amy locus of Drosophila melanogaster. Genetics 44 8536971
2006 SNPs and interaction analyses of noelin 2, myocilin, and optineurin genes in Japanese patients with open-angle glaucoma. Investigative ophthalmology & visual science 38 17122126
1984 Comparative analysis of mouse-human hybrids with rearranged chromosomes 1 by in situ hybridization and Southern blotting: high-resolution mapping of NRAS, NGFB, and AMY on human chromosome 1. Somatic cell and molecular genetics 37 6209808
1979 [Genetic analysis of interspecific crosses Mus musculus L. x Mus spretus Lataste: linkage of Adh-1 with Amy-1 on chromosome 3 and Es-14 with Mod-1 on chromosome 9]. Comptes rendus des seances de l'Academie des sciences. Serie D, Sciences naturelles 37 93520
2021 CGRP receptor antagonists for migraine. Are they also AMY1 receptor antagonists? British journal of pharmacology 36 34076887
2020 Enhancing secretion of polyethylene terephthalate hydrolase PETase in Bacillus subtilis WB600 mediated by the SPamy signal peptide. Letters in applied microbiology 36 32394501
2002 AMY-1 interacts with S-AKAP84 and AKAP95 in the cytoplasm and the nucleus, respectively, and inhibits cAMP-dependent protein kinase activity by preventing binding of its catalytic subunit to A-kinase-anchoring protein (AKAP) complex. The Journal of biological chemistry 35 12414807
2001 AMY-1, a c-Myc-binding protein, is localized in the mitochondria of sperm by association with S-AKAP84, an anchor protein of cAMP-dependent protein kinase. The Journal of biological chemistry 35 11483602
1997 Molecular evolution of the Amy multigenes in the subgenus Sophophora of Drosophila. Molecular biology and evolution 34 9287427
1984 Regional assignment of human amylase (AMY) to p22----p21 of chromosome 1. Somatic cell and molecular genetics 31 6608795
1996 Molecular analysis of the amy gene locus of Thermoanaerobacterium thermosulfurigenes EM1 encoding starch-degrading enzymes and a binding protein-dependent maltose transport system. Journal of bacteriology 30 8576036
1986 Structural organization of the Amy locus in seven strains of Drosophila melanogaster. Nucleic acids research 26 3016645
2016 miR-139 Functions as An Antioncomir to Repress Glioma Progression Through Targeting IGF-1 R, AMY-1, and PGC-1β. Technology in cancer research & treatment 25 26868851
2006 AMY-1 (associate of Myc-1) localization to the trans-Golgi network through interacting with BIG2, a guanine-nucleotide exchange factor for ADP-ribosylation factors. Genes to cells : devoted to molecular & cellular mechanisms 25 16866877
1986 Different tissue-specific expression of the amylase gene Amy-1 in mice and rats. Molecular and cellular biology 25 3025629
2023 A Noelin-organized extracellular network of proteins required for constitutive and context-dependent anchoring of AMPA-receptors. Neuron 24 37591201
2002 AAT-1, a novel testis-specific AMY-1-binding protein, forms a quaternary complex with AMY-1, A-kinase anchor protein 84, and a regulatory subunit of cAMP-dependent protein kinase and is phosphorylated by its kinase. The Journal of biological chemistry 24 12223483
2002 Neural expression of mouse Noelin-1/2 and comparison with other vertebrates. Mechanisms of development 23 12385760
1991 Effects of replacement of promoters and modification of the leader peptide region of the amy gene of Streptomyces griseus on synthesis and secretion of alpha-amylase by Streptomyces lividans. Molecular & general genetics : MGG 21 1753948
2017 Engineering a chimeric acid-stable α-amylase-glucoamylase (Amy-Glu) for one step starch saccharification. International journal of biological macromolecules 20 28238910
1985 Expression of mouse Amy-2a alpha-amylase genes is regulated by strong pancreas-specific promoters. Journal of molecular biology 20 3877171
1997 Amy as a reporter gene for promoter activity in Nocardia lactamdurans: comparison of promoters of the cephamycin cluster. Applied and environmental microbiology 18 9251185
2011 Cloning and expression analysis of the Bombyx mori α-amylase gene (Amy) from the indigenous Thai silkworm strain, Nanglai. Journal of insect science (Online) 17 21529256
1991 Long-range physical mapping of the alpha-amylase-1 (alpha-Amy-1) loci on homoeologous group 6 chromosomes of wheat. Molecular & general genetics : MGG 17 1944224
2014 A t(3;9)(q25.1;q34.3) translocation leading to OLFM1 fusion transcripts in Gilles de la Tourette syndrome, OCD and ADHD. Psychiatry research 14 25595337
2003 Molecular identification of AMY, an Alzheimer disease amyloid-associated protein. Journal of neuropathology and experimental neurology 13 14656069
2002 AMAP-1, a novel testis-specific AMY-1-binding protein, is differentially expressed during the course of spermatogenesis. Biochimica et biophysica acta 12 12151104
2001 alpha-Amylase expressed in human liver is encoded by the AMY-2B gene identified in tumorous tissues. Clinica chimica acta; international journal of clinical chemistry 12 11408008
1996 Molecular evolution of the 5'-flanking regions of the duplicated Amy genes in Drosophila melanogaster species subgroup. Molecular biology and evolution 12 8882500
1985 Mouse alpha-amylase loci, Amy-1a and Amy-2a, are closely linked. Journal of molecular biology 12 2989529
2022 Exopolysaccharides of Bacillus amyloliquefaciens Amy-1 Mitigate Inflammation by Inhibiting ERK1/2 and NF-κB Pathways and Activating p38/Nrf2 Pathway. International journal of molecular sciences 11 36142159
1985 The loss of a large DNA fragment is associated with an aerial mycelium negative (Amy-) phenotype of Streptomyces cattleya. Journal of general microbiology 11 3989515
2025 Gating and noelin clustering of native Ca2+-permeable AMPA receptors. Nature 10 40550474
2013 Effects of polymorphisms in pepsinogen (PEP), amylase (AMY) and trypsin (TRY) genes on food habit domestication traits in mandarin fish. International journal of molecular sciences 9 24177569
2000 AMY-1 is a trigger for the erythrocyte differentiation of K562 cells. International journal of oncology 9 10639579
1997 Molecular analysis of the intergenic region of the duplicated Amy genes of Drosophila melanogaster and Drosophila teissieri. Journal of molecular evolution 9 9211732
1994 Molecular analysis of cis-regulatory sequences of the alpha-amylase gene in D. melanogaster: a short 5'-flanking region of Amy distal gene is required for full expression of Amy proximal gene. Idengaku zasshi 9 7857669
1980 Additional evidence for the close linkage of amy-1 and amy-2 in the mouse. The Journal of heredity 9 6163812
2025 Echocardiographic phenotype in severe aortic stenosis with and without transthyretin cardiac amyloidosis: the AMY-TAVI study. European heart journal. Cardiovascular Imaging 8 39437308
2003 Molecular cloning of the mouse AMY-1 gene and identification of the synergistic activation of the AMY-1 promoter by GATA-1 and Sp1. Genomics 8 12620400
2000 AMY plaques in familial AD: comparison with sporadic Alzheimer's disease. Neurology 8 10636133
1985 Members of the Amy-2 alpha-amylase gene family of mouse strain CE/J contain duplicated 5' termini. Journal of molecular biology 8 2987507
1989 Molecular cloning of alpha-amylase genes from Drosophila melanogaster. III. An inversion at the Amy locus in an amylase-null strain. Biochemical genetics 7 2496682
2005 Genetic coadaptation of the amylase gene system in Drosophila melanogaster: evidence for the selective advantage of the lowest AMY activity and of its epistatic genetic background. The Journal of heredity 6 15800131
1999 Spatial relationship of AMY protein deposits and different species of Abeta peptides in amyloid plaques of the Alzheimer disease brain. Journal of neuropathology and experimental neurology 5 10604747
1990 Molecular genetics of a three-gene cluster in the Amy region of Drosophila. Progress in clinical and biological research 5 1697417
1987 Analysis of the mouse Amy locus in recombinant inbred mouse strains. Biochemical genetics 5 2451911
2024 Ab-Amy 2.0: Predicting light chain amyloidogenic risk of therapeutic antibodies based on antibody language model. Methods (San Diego, Calif.) 4 39550021
2011 Molecular cloning and tissue distribution of a Schistosoma japonicum gene encoding AMY-1. Molecular medicine reports 4 21874240
2024 Genome-Wide Identification and Expression Profiling of the α-Amylase (AMY) Gene Family in Potato. Genes 2 38927729
2023 Long Non-Coding RNA LPP-AS2 Plays an Anti-Tumor Role in Thyroid Carcinoma by Regulating the miR-132-3p/OLFM1 Axis. Critical reviews in eukaryotic gene expression 2 37199315
1999 Regulation of the expression of amy TO1 encoding a thermostable alpha-amylase from Streptomyces sp. TO1, in its original host and in Streptomyces lividans TK24. FEMS microbiology letters 2 10564786
2025 Roles of try and amy in feeding, digestion, growth, and development of the Japanese medaka (Oryzias latipes): insight from a comparative gene knockout study. Journal of Zhejiang University. Science. B 1 41847734
2024 Discovery and characterization of the α-amylases cDNAs from Enchytraeus albidus shed light on the evolution of "Enchytraeus-Eisenia type" Amy homologs in Annelida. Biochimie 1 38242278
2000 Comparison of different sperm detection methods: amplification of fragment 3 of amelogenin gene (AMY 3), acid phosphatase detection, microcristalline choline assay and microscopic examination. Roczniki Akademii Medycznej w Bialymstoku (1995) 1 11712442
1994 Adaptive significance of amylase polymorphism in Drosophila. VIII. Effect of carbohydrate dietary components on alpha-amylase activity and Amy-electromorph frequency in Drosophila busckii. Genetica 1 7525409
2025 Amy and Friends: improving the lives of individuals affected by DNA repair disorders. FEBS letters 0 40325879
2025 Copy Number Variation in the Amylase Gene (AMY) in the Brown Bear (Ursus arctos), Based on Whole Genome Resequencing Data. Zoological science 0 40908935
2025 Low OLFM1 and BMP6 Expression Predicts Recurrence in Early-Stage Nonsquamous NSCLC with Pure Solid Tumor Appearance. Cancer research communications 0 41259663
2025 FA-Amy: An amyloid protein prediction model based on protein pre-trained large models and an attention-fusion strategy. International journal of biological macromolecules 0 41319778
2024 Connective tissue amyloidosis in patients referred for orthopedic surgery. CONNECT-AMY study. Medicina clinica 0 39095264
2023 Meet the authors: Amy Lee, Shaoni Mukhopadhyay, and Maria Amodeo. Molecular cell 0 37738960
2021 Meet the author: Amy Tresenrider. Molecular cell 0 34019784

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