Affinage

NXN

Nucleoredoxin · UniProt Q6DKJ4

Round 2 corrected
Length
435 aa
Mass
48.4 kDa
Annotated
2026-04-29
42 papers in source corpus 7 papers cited in narrative 7 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

NXN (nucleoredoxin) is a thioredoxin-family oxidoreductase that modulates multiple signaling pathways—including Wnt/β-catenin and NF-κB/AP-1/CREB—in a redox-dependent manner, linking cellular redox state to transcriptional and developmental programs (PMID:9119370, PMID:10903915). NXN possesses insulin-disulfide-reducing activity comparable to thioredoxin and localizes predominantly to the nucleus, where it differentially regulates transcription factor activation downstream of NIK, MEKK, and PKA signaling (PMID:9119370, PMID:10903915). Biallelic loss-of-function variants in NXN cause autosomal recessive Robinow syndrome through disruption of the WNT5A/noncanonical Wnt pathway required for skeletal development (PMID:29276006). NXN protein levels are themselves regulated by K63-linked ubiquitination mediated by the E3 ligase KCMF1, and NXN suppresses epithelial–mesenchymal transition by interacting with the deubiquitylase DUB3 to promote ubiquitin–proteasome degradation of Snail (PMID:35927236, PMID:41721648).

Mechanistic history

Synthesis pass · year-by-year structured walk · 7 steps
  1. 1997 High

    Cloning and enzymatic characterization of NXN established it as a nuclear thioredoxin-family member with bona fide oxidoreductase activity, defining a new compartment-specific redox catalyst.

    Evidence Molecular cloning, in vitro insulin disulfide reduction assay, subcellular localization of tagged construct in transfected cells

    PMID:9119370

    Open questions at the time
    • Endogenous substrates in vivo were not identified
    • Whether nuclear localization is constitutive or regulated was not addressed
    • Catalytic mechanism and redox partners were not defined
  2. 2000 Medium

    NXN was shown to differentially regulate NF-κB, AP-1, and CREB transcription factor activation, revealing that its nuclear oxidoreductase activity feeds into specific signaling outputs distinct from those of cytosolic thioredoxin or glutaredoxin.

    Evidence Luciferase reporter assays for NF-κB, AP-1, CREB in HEK293 cells co-expressing upstream kinases (NIK, MEKK, PKA)

    PMID:10903915

    Open questions at the time
    • Direct redox targets mediating transcription factor regulation were not identified
    • Only a single cell line was used
    • Endogenous NXN contribution versus overexpression artifacts not distinguished
  3. 2007 Medium

    Placement of NXN as a redox-dependent regulator of the Wnt/β-catenin pathway consolidated its role beyond classical transcription factor modulation and linked it to cell growth and differentiation programs.

    Evidence Review synthesizing prior experimental data on Wnt/β-catenin regulation and domain/sequence analysis

    PMID:17567240

    Open questions at the time
    • Mechanistic basis of Wnt pathway regulation (direct binding partner, redox target) was not resolved
    • In vivo loss-of-function evidence was absent at this stage
  4. 2017 Medium

    Human genetic evidence established NXN as a Robinow syndrome gene, demonstrating that its function within the WNT5A/noncanonical Wnt signaling pathway is essential for skeletal morphogenesis.

    Evidence Whole-exome sequencing of two families with biallelic NXN loss-of-function variants, co-segregation analysis, WNT5A interactome mapping

    PMID:29276006

    Open questions at the time
    • Functional rescue or animal model recapitulation was not reported in the same study
    • Whether NXN directly binds WNT5A pathway components or acts indirectly through redox sensing was unresolved
    • Genotype–phenotype spectrum across additional families was limited
  5. 2022 Medium

    Discovery that NXN interacts with the deubiquitylase DUB3 and promotes Snail degradation via the ubiquitin–proteasome system revealed a non-redox effector mechanism by which NXN suppresses EMT and hepatocellular carcinoma metastasis.

    Evidence Reciprocal Co-IP, ubiquitination assays, gain/loss-of-function in vitro and in vivo xenograft models

    PMID:35927236

    Open questions at the time
    • Whether the NXN–DUB3 interaction depends on NXN redox state was not tested
    • Structural basis of the NXN–DUB3–Snail ternary complex is unknown
    • Generalizability beyond hepatocellular carcinoma not established
  6. 2025 Medium

    Nxn-knockout mice exhibit pituitary dysmorphology and impaired Wnt-dependent differentiation of pituitary stem cells, providing the first in vivo loss-of-function model linking NXN to both canonical and noncanonical Wnt signaling in organogenesis.

    Evidence Mouse knockout, scRNAseq trajectory analysis, Wnt reporter assays (preprint)

    PMID:bio_10.1101_2025.01.30.635771

    Open questions at the time
    • Preprint not yet peer-reviewed
    • Molecular targets of NXN redox activity in pituitary progenitors remain unidentified
    • Whether skeletal phenotypes recapitulate human Robinow syndrome features was not fully characterized
  7. 2026 Medium

    Identification of KCMF1 as an E3 ligase that degrades NXN via K63-linked ubiquitination established that NXN protein abundance is itself an actively regulated node controlling β-catenin pathway output.

    Evidence IP-LC/MS substrate identification, Co-IP, K63-linkage-specific ubiquitination assay, in vivo ovarian cancer xenograft models

    PMID:41721648

    Open questions at the time
    • Whether K63-ubiquitination also alters NXN subcellular localization or activity independently of degradation was not tested
    • Physiological contexts beyond ovarian cancer are unexplored
    • Interplay between KCMF1-mediated NXN degradation and NXN's own promotion of Snail degradation is unexplored

Open questions

Synthesis pass · forward-looking unresolved questions
  • The direct redox substrates through which NXN modulates Wnt and NF-κB signaling remain unidentified, and the structural basis for NXN's protein–protein interactions (DUB3, KCMF1) is unknown.
  • No crystal or cryo-EM structure of NXN or its complexes exists
  • Catalytic versus scaffolding contributions to Wnt pathway regulation have not been dissected
  • Tissue-specific essentiality beyond skeletal and pituitary development is not mapped

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0098772 molecular function regulator activity 3 GO:0016491 oxidoreductase activity 2
Localization
GO:0005634 nucleus 2
Pathway
R-HSA-162582 Signal Transduction 5 R-HSA-1266738 Developmental Biology 2 GO:0016491 oxidoreductase activity 1
Partners

Evidence

Reading pass · 7 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1997 Nucleoredoxin (NXN) was cloned and identified as a novel nuclear protein related to thioredoxin. The bacterially expressed NXN protein demonstrated oxidoreductase activity (insulin disulfide bond reduction) with kinetics similar to thioredoxin, and the protein was predominantly localized in the nucleus of transfected cells. Molecular cloning, in vitro oxidoreductase assay (insulin disulfide reduction), transfection with expression construct and subcellular localization analysis Genomics High 9119370
2000 NXN (nucleoredoxin) differentially regulates NF-κB, AP-1, and CREB transcription factor activation in HEK293 cells, with a distinct intracellular localization pattern compared to glutaredoxin and thioredoxin, indicating a unique nuclear role in redox-dependent transcriptional regulation. Transfection-based reporter assays (NF-κB, AP-1, CREB luciferase), intracellular localization studies, co-expression with signaling kinases (NIK, MEKK, PKA) Biochemical and biophysical research communications Medium 10903915
2007 NXN regulates the Wnt/β-catenin signaling pathway in a redox-dependent manner, and is involved in cell growth and differentiation. NXN possesses a conserved thioredoxin domain and catalytic motif for oxidoreductase activity, with closer sequence homology to tryparedoxin than to thioredoxin. Review synthesizing prior functional data including Wnt/β-catenin pathway regulation and sequence/domain analysis Antioxidants & redox signaling Medium 17567240
2017 Biallelic loss-of-function variants in NXN co-segregate with autosomal recessive Robinow syndrome in two families, placing NXN within the WNT5A interactome and the noncanonical Wnt/PCP signaling pathway essential for skeletal development. Whole-exome sequencing, family co-segregation analysis, protein interaction network (WNT5A interactome) analysis American journal of human genetics Medium 29276006
2022 NXN suppresses hepatocellular carcinoma metastasis by interacting with the deubiquitylase DUB3 and promoting ubiquitin-proteasome-mediated degradation of the EMT transcription factor Snail, thereby inhibiting epithelial-mesenchymal transition. Co-immunoprecipitation, ectopic expression and knockdown (CCK-8, EdU, colony formation, Transwell, wound healing assays), in vivo xenograft models, ubiquitination assays Cell death & disease Medium 35927236
2026 The E3 ubiquitin ligase KCMF1 interacts with NXN and promotes its degradation via K63-linked ubiquitination, reducing NXN protein levels and thereby activating the β-catenin signaling pathway to promote ovarian cancer progression. IP-LC/MS proteomics identifying NXN as KCMF1 substrate, Co-IP, label-free proteomics, knockdown/overexpression functional assays in vitro and in vivo (nude mice), ubiquitination assays Cell cycle (Georgetown, Tex.) Medium 41721648
2025 Nxn is expressed in the ventral diencephalon and developing pituitary gland. Nxn-deficient mice exhibit pituitary dysmorphology, craniofacial abnormalities, and reduced differentiation of pituitary stem cells into hormone-producing cells, associated with reduced canonical and non-canonical Wnt signaling. Mouse knockout model, pituitary morphology analysis, single-cell RNA sequencing trajectory analysis, Wnt signaling reporter assays bioRxivpreprint Medium bio_10.1101_2025.01.30.635771

Source papers

Stage 0 corpus · 42 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2002 Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America 1479 12477932
2009 Defining the human deubiquitinating enzyme interaction landscape. Cell 1282 19615732
2015 The BioPlex Network: A Systematic Exploration of the Human Interactome. Cell 1118 26186194
2017 Architecture of the human interactome defines protein communities and disease networks. Nature 1085 28514442
2003 Complete sequencing and characterization of 21,243 full-length human cDNAs. Nature genetics 754 14702039
2007 Large-scale mapping of human protein-protein interactions by mass spectrometry. Molecular systems biology 733 17353931
2021 Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Cell 705 33961781
2011 Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Briefings in bioinformatics 656 21873635
2018 High-Density Proximity Mapping Reveals the Subcellular Organization of mRNA-Associated Granules and Bodies. Molecular cell 580 29395067
2013 Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. Nature genetics 463 23535732
2017 Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing. Proceedings of the National Academy of Sciences of the United States of America 282 28611215
2016 An organelle-specific protein landscape identifies novel diseases and molecular mechanisms. Nature communications 211 27173435
2014 Large-scale genetic study in East Asians identifies six new loci associated with colorectal cancer risk. Nature genetics 205 24836286
2000 Nucleoredoxin, glutaredoxin, and thioredoxin differentially regulate NF-kappaB, AP-1, and CREB activation in HEK293 cells. Biochemical and biophysical research communications 160 10903915
2009 Ubiquitin-mediated proteolysis of HuR by heat shock. The EMBO journal 142 19322201
2017 RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. BMC biology 135 29117863
2000 Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. Proceedings of the National Academy of Sciences of the United States of America 135 10737800
2013 Genome-wide association study identifies a novel locus contributing to type 2 diabetes susceptibility in Sikhs of Punjabi origin from India. Diabetes 134 23300278
2022 The ubiquitin-dependent ATPase p97 removes cytotoxic trapped PARP1 from chromatin. Nature cell biology 122 35013556
2012 The genetic architecture of economic and political preferences. Proceedings of the National Academy of Sciences of the United States of America 121 22566634
2014 Gene-age interactions in blood pressure regulation: a large-scale investigation with the CHARGE, Global BPgen, and ICBP Consortia. American journal of human genetics 99 24954895
1997 Cloning and characterization of the nucleoredoxin gene that encodes a novel nuclear protein related to thioredoxin. Genomics 98 9119370
2015 DNA damage shifts circadian clock time via Hausp-dependent Cry1 stabilization. eLife 97 25756610
2017 Cell cycle-dependent phosphorylation regulates RECQL4 pathway choice and ubiquitination in DNA double-strand break repair. Nature communications 89 29229926
2017 WNT Signaling Perturbations Underlie the Genetic Heterogeneity of Robinow Syndrome. American journal of human genetics 88 29276006
2007 Nucleoredoxin, a novel thioredoxin family member involved in cell growth and differentiation. Antioxidants & redox signaling 88 17567240
2009 Findings from bipolar disorder genome-wide association studies replicate in a Finnish bipolar family-cohort. Molecular psychiatry 73 19308021
2021 Histone deacetylase inhibitors inhibit cervical cancer growth through Parkin acetylation-mediated mitophagy. Acta pharmaceutica Sinica. B 66 35256949
2013 NTR/NRX define a new thioredoxin system in the nucleus of Arabidopsis thaliana cells. Molecular plant 62 24253198
2022 NUDT21 limits CD19 levels through alternative mRNA polyadenylation in B cell acute lymphoblastic leukemia. Nature immunology 46 36138187
2019 PLEKHA4/kramer Attenuates Dishevelled Ubiquitination to Modulate Wnt and Planar Cell Polarity Signaling. Cell reports 42 31091453
2012 NXN-188, a selective nNOS inhibitor and a 5-HT1B/1D receptor agonist, inhibits CGRP release in preclinical migraine models. Cephalalgia : an international journal of headache 41 23155193
2023 NRX-0492 degrades wild-type and C481 mutant BTK and demonstrates in vivo activity in CLL patient-derived xenografts. Blood 25 36375120
2013 The nitric oxide synthase inhibitor and serotonin-receptor agonist NXN-188 during the aura phase of migraine with aura: A randomized, double-blind, placebo-controlled cross-over study. Scandinavian journal of pain 25 29913885
2010 Safety and pharmacokinetics of NXN-188 after single and multiple doses in five phase I, randomized, double-blind, parallel studies in healthy adult volunteers. Clinical therapeutics 16 20171420
2002 NBLAST: a cluster variant of BLAST for NxN comparisons. BMC bioinformatics 10 12019022
2022 NXN suppresses metastasis of hepatocellular carcinoma by promoting degradation of Snail through binding to DUB3. Cell death & disease 7 35927236
2022 NXN Gene Epigenetic Changes in an Adult Neurogenesis Model of Alzheimer's Disease. Cells 6 35406633
2023 NRX-101, a Rapid-Acting Anti-Depressant, Does Not Cause Neurotoxicity Following Ketamine Administration in Preclinical Models. International journal of toxicology 5 37226048
2026 KCMF1 promotes malignant progression by NXN ubiquitin-dependent degradation in ovarian cancer. Cell cycle (Georgetown, Tex.) 0 41721648
2025 Circular RNA NXN (circNXN) promotes diabetic retinopathy by regulating the miR-338-3p/FGFR1 axis. Archives of physiology and biochemistry 0 39988878
2024 Molecular characterization, transcriptional profiling, and antioxidant activity assessment of nucleoredoxin (NXN) as a novel member of thioredoxin from red-lip mullet (Planiliza haematocheilus). Fish & shellfish immunology 0 39736406