Affinage

NLGN1

Neuroligin-1 · UniProt Q8N2Q7

Length
863 aa
Mass
96.4 kDa
Annotated
2026-06-10
9 papers in source corpus 5 papers cited in narrative 6 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 4/4 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

NLGN1 is a postsynaptic cell adhesion molecule that organizes excitatory synapse assembly and plasticity by linking presynaptic and postsynaptic compartments (PMID:22723984, PMID:20010541). Its postsynaptic function is conserved and physiologically required: human NLGN1 rescues synaptic behavioral deficits in C. elegans nlg-1 mutants, and autism-associated mutations (R453C, D432X) abolish this rescue, defining residues critical for function (PMID:22723984, PMID:20010541). PKA phosphorylates NLGN1 at S839 near its PDZ ligand, and this modification dynamically tunes binding to the scaffold PSD-95; disrupting the NLGN1/PSD-95 interaction reduces NLGN1 surface expression and diminishes NLGN1-mediated synaptic enhancement, coupling phosphorylation state to synaptic trafficking (PMID:31138690). NLGN1 abundance is also set translationally downstream of mTORC1: elevated cap-dependent translation in Tsc2 heterozygous mice raises NLGN1, and lowering NLGN1 rescues mGluR-LTD and behavioral deficits, placing it as an effector limb of mTORC1 signaling (PMID:37293130).

Mechanistic history

Synthesis pass · year-by-year structured walk · 5 steps
  1. 2009 Medium

    Established that neuroligin-1 is required for synaptic function at the organismal level, moving it from a candidate adhesion molecule to a functionally necessary synaptic component.

    Evidence Loss-of-function and RNAi behavioral assays (osmotic avoidance) in C. elegans nlg-1 mutants

    PMID:20010541

    Open questions at the time
    • No molecular partners or postsynaptic mechanism resolved
    • Phenotype is behavioral, not synapse-resolved
  2. 2012 Medium

    Demonstrated that human NLGN1 acts postsynaptically and that specific disease-associated residues are functionally essential, by showing cross-species rescue and its loss with point/truncation mutations.

    Evidence Transgenic rescue and RNAi in C. elegans, site-directed mutagenesis, behavioral assays

    PMID:22723984

    Open questions at the time
    • Mechanism by which R453C/D432X abolish function not defined
    • Mammalian validation of rescue not addressed
  3. 2019 High

    Identified a phosphoregulatory switch—PKA phosphorylation at S839—that controls NLGN1/PSD-95 binding and thereby surface trafficking and synaptic strength, explaining how NLGN1 function is dynamically gated.

    Evidence Phosphomimetic mutagenesis, Co-IP, surface expression and synaptic function assays in cultured neurons

    PMID:31138690

    Open questions at the time
    • Kinase/phosphatase regulation in vivo not established
    • Whether phosphorylation responds to defined activity signals unknown
  4. 2023 Medium

    Placed NLGN1 downstream of mTORC1 by showing that translational upregulation of NLGN1 drives disease-relevant synaptic and behavioral deficits that are rescued by lowering NLGN1.

    Evidence Genetic knockdown and pharmacological inhibition of Nlgn1 in Tsc2 mice, mGluR-LTD electrophysiology, behavioral assays

    PMID:37293130

    Open questions at the time
    • Direct link between NLGN1 levels and LTD machinery not defined
    • Single model system
  5. 2025 Low

    Implicated the NRXN3-NLGN1 transsynaptic complex and the MDGA2-NLGN1 interaction as additional regulators of glutamatergic synapse structure and stress-related plasticity.

    Evidence Maternal separation rat model with expression and dendritic morphology analysis (NRXN3); mammalian expression systems and hippocampal neurons with MDGA2 variant interaction assays (preprint)

    PMID:40286836

    Open questions at the time
    • NRXN3-NLGN1 finding is correlative without direct binding/mutagenesis
    • MDGA2 interaction reported in a preprint as a secondary finding without detailed methods

Open questions

Synthesis pass · forward-looking unresolved questions
  • How phosphoregulation, transsynaptic neurexin binding, MDGA2 competition, and mTORC1-driven abundance are integrated to set excitatory synapse number and strength in vivo remains unresolved.
  • No unified in vivo model connecting trafficking control to translational control
  • Structural basis of partner selectivity not addressed in this corpus

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0098631 cell adhesion mediator activity 2 GO:0060089 molecular transducer activity 1
Localization
GO:0005886 plasma membrane 2
Partners
Complex memberships
NRXN3-NLGN1 transsynaptic complex

Evidence

Reading pass · 6 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2019 PKA phosphorylates NLGN1 on S839, near the PDZ ligand, and this phosphorylation dynamically regulates binding to PSD-95. A phosphomimetic mutation (S839E) significantly reduced PSD-95 binding. Disruption of the NLGN1/PSD-95 interaction decreased surface expression of NLGN1 in cultured neurons and diminished NLGN1-mediated synaptic enhancement. Phosphomimetic mutagenesis, surface expression assays in cultured neurons, Co-IP, synaptic function assays Proceedings of the National Academy of Sciences of the United States of America High 31138690
2012 Human NLGN1 functions postsynaptically and can rescue behavioral deficits (osmotic avoidance and gentle touch response) in C. elegans nlg-1 mutants. Autism-associated point mutations R453C (equivalent to NLGN3 R451C) and truncation D432X (equivalent to NLGN4 D396X) introduced into human NLGN1 abolished rescue, establishing these residues as functionally critical. RNAi and transgenic rescue experiments confirmed a postsynaptic in vivo function of neuroligin in both muscle cells and neurons. Transgenic rescue in C. elegans nlg-1 mutants, RNAi feeding experiments, site-directed mutagenesis, behavioral assays PloS one Medium 22723984
2009 C. elegans nrx-1 and nlg-1 (orthologues of human NRXN1 and NLGN1) are required for correct synaptic function; mutants defective in nlg-1 show impaired osmotic avoidance behavior, confirmed by RNAi, demonstrating a synaptic role for neuroligin-1 at the organismal level. Loss-of-function mutant behavioral assays (osmotic avoidance), RNAi Journal of visualized experiments : JoVE Medium 20010541
2023 Elevated mTORC1-driven cap-dependent translation in Tsc2 heterozygous mice increases NLGN1 mRNA translation and protein expression. Genetic or pharmacological inhibition of Nlgn1 expression rescued impaired hippocampal mGluR-LTD, contextual discrimination deficits, and social behavior deficits in Tsc2 mice without correcting mTORC1 hyperactivation, placing NLGN1 downstream of mTORC1 in this pathway. Genetic knockdown and pharmacological inhibition of Nlgn1 in Tsc2 mouse model, mGluR-LTD electrophysiology, behavioral assays Frontiers in cell and developmental biology Medium 37293130
2025 NRXN3 forms a complex with NLGN1 in the hippocampus. Downregulation of both NRXN3 and NLGN1 preceded synaptic plasticity alterations (reduced dendritic branch and spine lengths) and depression-related behaviors in a maternal separation rat model, identifying the NRXN3-NLGN1 complex as a mediator of stress-induced synaptic plasticity changes. Rat maternal separation model, protein expression analysis, dendritic morphology assays, behavioral assays Brain research Low 40286836
2025 MDGA2 interacts with Nlgn1; loss-of-function MDGA2 variants disrupt this interaction and perturb MDGA2-mediated synaptic functions, as demonstrated in mammalian expression systems and hippocampal cultured neurons. This places NLGN1 as a binding partner of MDGA2 in glutamatergic synapse regulation. Mammalian expression systems, hippocampal cultured neurons, functional studies of MDGA2 nonsense variants, interaction assays bioRxivpreprint Low

Source papers

Stage 0 corpus · 9 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2019 PSD-95 binding dynamically regulates NLGN1 trafficking and function. Proceedings of the National Academy of Sciences of the United States of America 52 31138690
2016 Genome-wide gene-based analysis suggests an association between Neuroligin 1 (NLGN1) and post-traumatic stress disorder. Translational psychiatry 51 27219346
2015 Evidence for Association of Cell Adhesion Molecules Pathway and NLGN1 Polymorphisms with Schizophrenia in Chinese Han Population. PloS one 36 26674772
2017 NLGN1 and NLGN2 in the prefrontal cortex: their role in memory consolidation and strengthening. Current opinion in neurobiology 34 29278843
2012 Functional phenotypic rescue of Caenorhabditis elegans neuroligin-deficient mutants by the human and rat NLGN1 genes. PloS one 23 22723984
2009 Osmotic avoidance in Caenorhabditis elegans: synaptic function of two genes, orthologues of human NRXN1 and NLGN1, as candidates for autism. Journal of visualized experiments : JoVE 22 20010541
2023 Reversal of memory and autism-related phenotypes in Tsc2 mice via inhibition of Nlgn1. Frontiers in cell and developmental biology 6 37293130
2022 A regulatory circuit of lncRNA NLGN1-AS1 and Wnt signalling controls clear cell renal cell carcinoma phenotypes through FZD4-modulated pathways. Aging 3 36170021
2025 NRXN3-NLGN1 complex influences the development of depression induced by maternal separation in rats. Brain research 0 40286836

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