Affinage

NEO1

Neogenin · UniProt Q92859

Length
1461 aa
Mass
160.0 kDa
Annotated
2026-06-10
22 papers in source corpus 8 papers cited in narrative 9 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 6/6 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

NEO1 (neogenin) is a multidomain transmembrane receptor that transduces axon guidance and morphogenetic cues to control neural development, epithelial fate, and tissue barrier integrity (PMID:33740419, PMID:32231305). Its ectodomain comprises four immunoglobulin-like domains and six fibronectin type III repeats followed by a transmembrane and intracellular segment, with isoform diversity generated by alternative splicing of the intracellular domain (PMID:9169140). NEO1 simultaneously engages Netrin-1 and RGM ligands, assembling a ternary NEO1-NET1-RGM complex that oligomerizes into a 'trimer-of-trimers' super-assembly; this higher-order arrangement is inhibitory, blocking RGMA-NEO1 growth cone collapse and NET1- or RGMA-driven neuron migration by preventing formation of signaling-competent receptor clusters (PMID:33740419). Productive Netrin-1-NEO1 signaling activates focal adhesion kinase (FAK): in embryonic stem cells, with co-receptor UNC5B, this inactivates GSK3α/β to stabilize β-catenin and dampens ERK1/2 via a PPP2R2C-PP2A complex to promote naive pluripotency (PMID:32231305), while in pancreatic epithelium FAK activation upregulates ZEB1 and SOX9 to drive epithelial-mesenchymal transition and cancer stemness (PMID:41474982). RGM-induced glycosylation and intramembrane proteolysis of NEO1 release a nuclear intracellular fragment (NeoICD) required for neuroepithelial cell elongation and neural tube morphogenesis (PMID:31399534). In astrocytes, NEO1 maintains blood-brain barrier integrity and governs inflammatory A1 polarization after subarachnoid hemorrhage through a cPLA2-MAVS-NF-κB pathway (PMID:39107268, PMID:41345945).

Mechanistic history

Synthesis pass · year-by-year structured walk · 9 steps
  1. 1997 Medium

    Established the domain architecture of human neogenin, defining it as an Ig/FnIII-containing transmembrane receptor with splice variation in its intracellular domain.

    Evidence cDNA cloning, sequencing, and Northern blot of human NEO1

    PMID:9169140

    Open questions at the time
    • No ligand or signaling partner identified at this stage
    • Functional role of intracellular splice isoforms not resolved
  2. 2015 Low

    Implicated nuclear translocation of neogenin as functionally important by showing an NLS missense variant abolishes nuclear import.

    Evidence Functional NLS-mutant nuclear translocation assay with in silico prediction

    PMID:26518331

    Open questions at the time
    • Single-variant functional assay with limited methodological detail
    • Downstream consequences of failed nuclear import not characterized
    • Link to a physiological phenotype not established
  3. 2019 Medium

    Connected RGM ligand to regulated intramembrane proteolysis, showing the released NeoICD fragment is the morphogenetic effector for neural tube development.

    Evidence Zebrafish morpholino knockdown, cell transplantation, and NeoICD overexpression rescue

    PMID:31399534

    Open questions at the time
    • Protease responsible for cleavage not identified
    • Nuclear targets of NeoICD unknown
    • Only partial rescue achieved by NeoICD
  4. 2020 High

    Defined a productive Netrin-1-NEO1 signaling output, coupling NEO1 to FAK-GSK3-β-catenin and, via UNC5B, to PP2A-ERK modulation to control stem cell pluripotency.

    Evidence mESC 2i/LIF culture, receptor knockdown/overexpression, kinase and phosphatase assays, Co-IP, replicated in human ESCs

    PMID:32231305

    Open questions at the time
    • Stoichiometry of NEO1/UNC5B receptor partitioning not resolved
    • Direct FAK-NEO1 contact not structurally defined
  5. 2021 High

    Provided the structural basis for ligand integration, showing NEO1 binds NET1 and RGM simultaneously into an inhibitory super-complex that suppresses guidance signaling.

    Evidence X-ray crystallography, cryo-EM, growth cone collapse and neuron migration assays with mutagenesis

    PMID:33740419

    Open questions at the time
    • In vivo prevalence of the super-complex versus signaling-competent complexes unquantified
    • How clustering state is set in physiological membranes unknown
  6. 2024 Medium

    Extended NEO1 function beyond neurons, showing astrocytic NEO1 is required for blood-brain barrier integrity after hemorrhage.

    Evidence Astrocyte GFAP-Cre conditional knockout, BBB leakage assays, TEM, SAH mouse model

    PMID:39107268

    Open questions at the time
    • Molecular link between NEO1 and endothelial proliferation not defined
    • Mechanism of hepcidin rescue unresolved
  7. 2025 Medium

    Identified the inflammatory pathway downstream of astrocytic NEO1, placing it upstream of cPLA2-MAVS-NF-κB to drive A1 astrocyte polarization.

    Evidence Astrocyte conditional knockout, transcriptomics, lentiviral cPLA2 rescue, SAH model

    PMID:41345945

    Open questions at the time
    • Direct biochemical link between NEO1 receptor and cPLA2 induction not shown
    • Ligand triggering this astrocytic pathway unidentified
  8. 2026 Medium

    Showed NEO1 mediates Netrin-1-driven epithelial-mesenchymal transition and cancer stemness in pancreatic tissue via FAK-ZEB1/SOX9, and supports sympathetic axonogenesis.

    Evidence Pancreatic organoids, KrasG12D mice, NEO1 KO/knockdown, NTN1 treatment and neutralizing antibody, ex vivo ganglia culture

    PMID:41474982

    Open questions at the time
    • Whether super-complex formation modulates this oncogenic signaling untested
    • Contribution of UNC5B co-receptor in this context unknown
  9. 2025 Medium

    Defined a phospholipid flippase activity for the yeast ortholog Neo1, capturing PI4P in the substrate translocation pathway by cryo-EM and linking flippase loss to extracellular PI4P-mediated drug uptake.

    Evidence Cryo-EM with bound PI4P, yeast mutant and neomycin sensitivity assays, Sac1 epistasis (preprint)

    Open questions at the time
    • Activity demonstrated for yeast Neo1, not human NEO1
    • Preprint, not peer-reviewed
    • Relationship between flippase function and the receptor signaling roles of vertebrate NEO1 unestablished

Open questions

Synthesis pass · forward-looking unresolved questions
  • How the structurally defined inhibitory super-complex is dynamically converted to productive FAK-coupled signaling in vivo, and whether vertebrate NEO1 retains any lipid-handling activity, remain open.
  • No structure of the active signaling-competent NEO1 complex with FAK
  • Protease and nuclear NeoICD targets unidentified
  • Flippase activity not demonstrated for human NEO1

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060089 molecular transducer activity 3 GO:0048018 receptor ligand activity 1
Localization
GO:0005634 nucleus 2 GO:0005886 plasma membrane 2
Pathway
R-HSA-162582 Signal Transduction 3 R-HSA-1266738 Developmental Biology 2
Partners
Complex memberships
NEO1-NET1-RGM ternary super-complex

Evidence

Reading pass · 9 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1997 Human neogenin (NEO1) protein consists of four immunoglobulin-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain, and is expressed in at least two isoforms derived from alternative splicing in the intracellular domain. cDNA cloning, sequencing, Northern blot analysis Genomics Medium 9169140
2015 A missense variant (p.Arg1130Cys) at the nuclear localization signal (NLS) domain of neogenin leads to defective nuclear translocation of the neogenin protein, as shown by in silico and functional analyses. Functional analysis of NLS mutant, in silico prediction, nuclear translocation assay Behavioural brain research Low 26518331
2019 Rgma promotes NEO1 glycosylation and intramembrane proteolysis in zebrafish, resulting in production of a transient nuclear intracellular fragment (NeoICD) that is required for neuroepithelial cell elongation and neural tube morphogenesis; partial rescue by overexpressing neoICD supports proteolytic cleavage as the key signaling event. Zebrafish loss-of-function (morpholino knockdown), cell transplantation, overexpression rescue, reporter assays The Journal of neuroscience Medium 31399534
2020 Netrin-1 (NET1) signals through NEO1 and co-receptor UNC5B to co-regulate Wnt and MAPK pathways in mouse embryonic stem cells: NEO1 binding induces FAK kinase to inactivate GSK3α/β and stabilize β-catenin, while UNC5B signals through a PPP2R2C-containing PP2A complex to reduce ERK1/2 activity, promoting naive pluripotency. mESC culture with 2i/LIF, receptor knockdown/overexpression, kinase activity assays, co-immunoprecipitation, phospho-Western blot Nature cell biology High 32231305
2021 NEO1 simultaneously binds both NET1 and RGM ligands to form a ternary NEO1-NET1-RGM complex that assembles into a 'trimer-of-trimers' super-assembly in the cell membrane; this super-complex inhibits both RGMA-NEO1-mediated growth cone collapse and RGMA- or NET1-NEO1-mediated neuron migration by preventing formation of signaling-compatible RGM-NEO1 complexes and NET1-induced NEO1 ectodomain clustering. Crystal structure determination (X-ray crystallography), cryo-EM, growth cone collapse assay, neuron migration assay, cell membrane complex analysis Cell High 33740419
2024 Astrocytic NEO1 is required for blood-brain barrier integrity after subarachnoid hemorrhage; conditional knockout of NEO1 in astrocytes (NEO1-GFAP-Cre mice) leads to increased endothelial cell proliferation, altered BBB structure, and increased BBB permeability, which can be reversed by hepcidin treatment. Astrocyte-specific conditional knockout (GFAP-Cre), Evans Blue/dextran leakage assay, transmission electron microscopy, immunostaining, SAH mouse model Cell death & disease Medium 39107268
2025 NEO1 in astrocytes mediates A1 astrocyte polarization after subarachnoid hemorrhage through the cPLA2-MAVS-NF-κB signaling pathway; NEO1 knockout reduces cPLA2 and MAVS mRNA, inhibits A1 polarization and inflammatory factor release, and cPLA2 overexpression reverses these effects. Astrocyte-specific conditional knockout (GFAP-Cre), transcriptome sequencing, lentiviral cPLA2 overexpression, in vitro astrocyte assays, SAH mouse model Journal of neuroinflammation Medium 41345945
2026 Netrin-1 signals through its receptor NEO1 in pancreatic epithelial cells to activate focal adhesion kinase (FAK), upregulate ZEB1 and SOX9, and promote epithelial-mesenchymal transition and cancer stemness; NEO1 also mediates netrin-1-promoted axonogenesis of sympathetic neurons in ex vivo celiac ganglia culture. Pancreatic organoid culture, KrasG12D mouse model, NEO1 knockout/knockdown, recombinant NTN1 treatment, netrin-1 neutralizing antibody, FAK phosphorylation assay, ex vivo celiac ganglia culture Cancer research Medium 41474982
2025 Cryo-EM reveals that phosphatidylinositol-4-phosphate (PI4P) binds NEO1 (yeast Neo1) within the substrate translocation pathway; Neo1 flips PI4P from the lumenal leaflet to the cytosolic leaflet in the Golgi, and loss of Neo1 activity leads to secretion of extracellular PI4P that serves as a neomycin receptor facilitating its endocytic uptake. Cryo-EM structure determination, yeast Neo1 mutant analysis, neomycin sensitivity assays, PI4P localization assays, Sac1 phosphatase epistasis bioRxivpreprint Medium

Source papers

Stage 0 corpus · 22 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2004 The SWI/SNF chromatin remodeling protein Brg1 is required for vertebrate neurogenesis and mediates transactivation of Ngn and NeuroD. Development (Cambridge, England) 164 15576411
2007 Helt determines GABAergic over glutamatergic neuronal fate by repressing Ngn genes in the developing mesencephalon. Development (Cambridge, England) 87 17611227
2016 The Essential Neo1 Protein from Budding Yeast Plays a Role in Establishing Aminophospholipid Asymmetry of the Plasma Membrane. The Journal of biological chemistry 49 27235400
2020 Netrin-1 promotes naive pluripotency through Neo1 and Unc5b co-regulation of Wnt and MAPK signalling. Nature cell biology 41 32231305
2021 Simultaneous binding of Guidance Cues NET1 and RGM blocks extracellular NEO1 signaling. Cell 38 33740419
1997 Molecular characterization of human neogenin, a DCC-related protein, and the mapping of its gene (NEO1) to chromosomal position 15q22.3-q23. Genomics 36 9169140
2017 Quantitative high-content imaging identifies novel regulators of Neo1 trafficking at endosomes. Molecular biology of the cell 32 28404745
2007 Role of Phe1010 in light-induced structural changes of the neo1-LOV2 domain of Adiantum. Biochemistry 30 18163650
2016 Neo1 and phosphatidylethanolamine contribute to vacuole membrane fusion in Saccharomyces cerevisiae. Cellular logistics 27 27738552
2019 Rgma-Induced Neo1 Proteolysis Promotes Neural Tube Morphogenesis. The Journal of neuroscience : the official journal of the Society for Neuroscience 14 31399534
2015 Unmasking a novel disease gene NEO1 associated with autism spectrum disorders by a hemizygous deletion on chromosome 15 and a functional polymorphism. Behavioural brain research 14 26518331
2020 ngn-1/neurogenin Activates Transcription of Multiple Terminal Selector Transcription Factors in the Caenorhabditis elegans Nervous System. G3 (Bethesda, Md.) 12 32273286
2019 The PQ-loop protein Any1 segregates Drs2 and Neo1 functions required for viability and plasma membrane phospholipid asymmetry. Journal of lipid research 10 30824614
2019 Conserved mechanism of phospholipid substrate recognition by the P4-ATPase Neo1 from Saccharomyces cerevisiae. Biochimica et biophysica acta. Molecular and cell biology of lipids 10 31786280
2024 Hepcidin depending on astrocytic NEO1 ameliorates blood-brain barrier dysfunction after subarachnoid hemorrhage. Cell death & disease 9 39107268
2020 The Renoprotective Effects of Naringenin (NGN) in Gestational Pregnancy. Diabetes, metabolic syndrome and obesity : targets and therapy 6 32021351
2017 Changes on the Pancreas in Experimental Diabetes and the Effect of Lycopene on These Changes: Pdx-1, Ngn-3, and Nestin Expressions. Anatomical record (Hoboken, N.J. : 2007) 5 28921917
2023 Retinal Ganglion Cell Fate Induction by Ngn-Family Transcription Factors. Investigative ophthalmology & visual science 4 38133504
2026 Netrin-1 Promotes Pancreatic Tumorigenesis and Innervation through NEO1. Cancer research 3 41474982
2025 NEO1 modulates the A1 astrocyte polarization in subarachnoid hemorrhage through the cPLA2-MAVS signaling pathway. Journal of neuroinflammation 1 41345945
2024 Predictive capacity for local disease control of neogenin-1 (NEO1) transcriptional expression in patients with head and neck squamous cell carcinoma. Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico 1 38898351
2025 Netrin-1 promotes pancreatic tumorigenesis and innervation through NEO1. bioRxiv : the preprint server for biology 0 40777309

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