Affinage

MYPN

Myopalladin · UniProt Q86TC9

Length
1320 aa
Mass
145.3 kDa
Annotated
2026-06-10
10 papers in source corpus 6 papers cited in narrative 6 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 4/4 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

Myopalladin (MYPN) is a striated muscle protein that localizes to the sarcomeric Z-line and is required to maintain Z-line structural integrity in skeletal and cardiac muscle (PMID:28017374). Biallelic loss-of-function mutations abolish full-length protein and Z-line localization, producing Z-streaming, nemaline-like bodies, and ultrastructural Z-line fragmentation, with residual protein accumulating in cap structures together with alpha-actinin (PMID:28017374, PMID:28220527, PMID:31133047). Mechanistically, the Ig3 domain mediates actin binding and bundling through conserved basic charge clusters via electrostatic interactions and promotes actin polymerization from monomeric actin in a calcium-independent manner; cardiomyopathy-associated Ig3 mutations (R955W, P961L) impair actin binding, nearly abolish bundling, and cause mislocalization into Z-disc clusters [PMID:bio_10.1101_2025.09.18.677238]. Disruption of MYPN function shifts sarcomeric and cytoskeletal gene programs, downregulating sarcomeric, Z-disc, and SRF-signaling genes rather than directly altering cardiomyocyte electrophysiology (PMID:42074575). Loss-of-function MYPN mutations cause a Z-line myopathy with nemaline-like and cap features (PMID:28017374).

Mechanistic history

Synthesis pass · year-by-year structured walk · 6 steps
  1. 2016 High

    Established that MYPN is a Z-line protein whose loss disrupts Z-line architecture, defining its core structural role and disease relevance in striated muscle.

    Evidence Immunofluorescence in human muscle biopsies plus electron microscopy of homozygous nonsense knockin mice across multiple families

    PMID:28017374

    Open questions at the time
    • Did not define the molecular interactions through which MYPN maintains Z-line integrity
    • Mechanism of nemaline-like body formation unresolved
  2. 2017 Medium

    Showed that truncating mutations cause mRNA defects and loss of full-length protein, with residual myopalladin accumulating in caps alongside alpha-actinin, linking MYPN loss to disturbed alpha-actinin organization.

    Evidence mRNA analysis and protein/immunofluorescence assays in patient muscle from two unrelated families

    PMID:28220527

    Open questions at the time
    • Whether MYPN directly binds alpha-actinin not tested
    • Single lab, limited families
  3. 2019 Medium

    Confirmed with reciprocal protein and localization data that full-length MYPN is required for Z-line structural integrity, reinforcing the loss-of-function disease model.

    Evidence Immunoblotting and immunofluorescence of patient muscle with WES genetic identification

    PMID:31133047

    Open questions at the time
    • No mechanistic interaction data
    • Single lab
  4. 2025 Medium

    Provided the molecular mechanism by defining the Ig3 domain as an actin-binding, bundling, and polymerization-promoting module dependent on basic charge clusters, and showing cardiomyopathy mutations disrupt these activities and cause mislocalization.

    Evidence Actin co-sedimentation and co-polymerization assays with charge-neutralizing mutagenesis, circular dichroism, and GFP-construct localization in Drosophila muscle (preprint)

    PMID:bio_10.1101_2025.09.18.677238

    Open questions at the time
    • In vitro and Drosophila system; not validated in mammalian cardiomyocytes
    • Preprint not yet peer-reviewed
    • Quantitative contribution of bundling vs polymerization to Z-line maintenance unresolved
  5. 2024 Medium

    Tested causality of a familial LVNC-associated MYPN variant and found the orthologous Mypn S1291T mutation alone insufficient to cause disease, indicating it is not the primary pathogenic driver in that context.

    Evidence Knock-in mice with Mypn S1291T alone vs Tnnt2 mutant vs double mutant, with cardiac phenotyping (preprint)

    PMID:bio_10.1101_2024.10.09.24314670

    Open questions at the time
    • Negative result for one specific variant; not generalizable to other MYPN mutations
    • Preprint
    • Potential modifier role with TNNT2 not fully resolved
  6. 2026 Medium

    Connected an HCM-associated MYPN variant to transcriptional reprogramming of sarcomeric and cytoskeletal gene programs rather than to direct electrophysiological dysfunction.

    Evidence Patient iPSC-derived cardiomyocytes with patch-clamp, calcium imaging, and RNA-seq

    PMID:42074575

    Open questions at the time
    • Non-isogenic controls limit attribution to the variant
    • Causal link between MYPN dysfunction and the transcriptional changes not established
    • Single lab

Open questions

Synthesis pass · forward-looking unresolved questions
  • How MYPN integrates actin bundling with Z-line signaling and sarcomeric gene expression, and whether it engages defined Z-line partners beyond alpha-actinin in mammalian muscle, remains open.
  • No direct mammalian binding partners established in the corpus
  • Mechanism linking structural loss to SRF/sarcomeric transcriptional changes unknown
  • No high-resolution structure of the actin-bound Ig3 domain

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0008092 cytoskeletal protein binding 1
Localization
GO:0005856 cytoskeleton 2
Pathway
R-HSA-397014 Muscle contraction 1
Partners

Evidence

Reading pass · 6 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2016 MYPN (myopalladin) is localized at the Z-line in control skeletal muscles; biallelic loss-of-function mutations in MYPN result in absence of protein from the Z-line and cause Z-streaming and nemaline-like bodies adjacent to a disorganized Z-line, establishing MYPN's role in maintaining Z-line integrity in striated muscle. Immunofluorescence localization in human muscle biopsies and knockin mouse model (electron microscopy of homozygous nonsense-mutation knockin mice) American journal of human genetics High 28017374
2017 Homozygous truncating mutations in MYPN lead to mRNA defects and strong reduction of full-length myopalladin protein; residual myopalladin signals accumulate in cap structures together with alpha-actinin, indicating myopalladin functions at the Z-line and its loss disrupts normal alpha-actinin organization. Functional experiments on patient muscle: mRNA analysis, protein expression assays (immunoblot/immunofluorescence), co-localization of myopalladin and alpha-actinin in caps Annals of neurology Medium 28220527
2019 A homozygous loss-of-function deletion in MYPN exon 11 renders full-length myopalladin protein undetectable on immunoblotting and abolishes Z-line localization on immunofluorescence, accompanied by ultrastructural Z-line fragmentation, confirming MYPN is required for Z-line structural integrity in skeletal muscle. Immunoblotting and immunofluorescence of patient muscle biopsy; whole-exome sequencing for genetic identification Skeletal muscle Medium 31133047
2025 The Ig3 domain of MYPN mediates actin binding and bundling through conserved basic charge clusters via electrostatic interactions; cardiomyopathy-associated mutations (e.g., R955W, P961L) within this domain impair actin binding, nearly abolish actin bundling, and cause mislocalization into clusters at Z-discs in Drosophila cardiomyocytes and body wall muscles without broadly altering secondary protein structure (except P961L which is destabilized). MYPN also promotes actin polymerization from monomeric actin, and this activity is not modulated by calcium. Actin co-sedimentation assays with charge-neutralizing alanine substitution mutagenesis; co-polymerization assays; circular dichroism spectroscopy; GFP-tagged construct expression and immunostaining in Drosophila cardiomyocytes and body wall muscles bioRxivpreprint Medium bio_10.1101_2025.09.18.677238
2026 iPSC-derived cardiomyocytes carrying the MYPN p.N989I variant showed no significant changes in calcium transients, sodium current, or action potential compared to control cells, but exhibited transcriptomic upregulation of cell cycle, mitotic spindle, microtubule cytoskeleton, and myogenic program genes, and downregulation of sarcomeric, Z-disc, cell junction, ATP synthesis, oxidative phosphorylation, and SRF-signaling genes, suggesting MYPN p.N989I disrupts sarcomeric/cytoskeletal gene programs rather than direct electrophysiological function. iPSC-derived cardiomyocytes from HCM patient; patch-clamp electrophysiology; calcium transient measurements; RNA-seq transcriptomic profiling Genes Medium 42074575
2024 In a compound TNNT2/MYPN double-mutant LVNC model, knock-in of the orthologous Mypn S1291T mutation alone did NOT cause cardiac hypertrabeculation, noncompaction, or heart failure in mice, indicating the MYPN variant is not the primary pathogenic driver in this familial LVNC context. Knock-in C57BL/6J mice harboring Mypn S1291T alone vs. Tnnt2 R154W alone vs. double mutant; cardiac phenotyping bioRxivpreprint Medium bio_10.1101_2024.10.09.24314670

Source papers

Stage 0 corpus · 10 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2016 Biallelic Mutations in MYPN, Encoding Myopalladin, Are Associated with Childhood-Onset, Slowly Progressive Nemaline Myopathy. American journal of human genetics 64 28017374
2017 Recessive MYPN mutations cause cap myopathy with occasional nemaline rods. Annals of neurology 28 28220527
2017 Novel trigenic CACNA1C/DES/MYPN mutations in a family of hypertrophic cardiomyopathy with early repolarization and short QT syndrome. Journal of translational medicine 27 28427417
2010 A novel polymorphism of the MYPN gene and its association with meat quality traits in Bos taurus. Genetics and molecular research : GMR 15 20812196
2019 Congenital myopathy with hanging big toe due to homozygous myopalladin (MYPN) mutation. Skeletal muscle 10 31133047
2013 SNPs of MYPN and TTN genes are associated to meat and carcass traits in Italian Large White and Italian Duroc pigs. Molecular biology reports 10 24158610
2023 Associations of MYPN, TTN, SCN5A, MYO6 and ELN Mutations With Arrhythmias and Subsequent Sudden Cardiac Death: A Case Report of an Ecuadorian Individual. Cardiology research 8 37936622
2021 Nemaline Rod/Cap Myopathy Due to Novel Homozygous MYPN Mutations: The First Report from South Asia and Comprehensive Literature Review. Journal of clinical neurology (Seoul, Korea) 2 34184449
2026 Multi-omics analysis reveals RBPJ-mediated regulation of EGF/ACTN2/MYPN/COL21A1 in fibroblast during oviduct functional remodeling of duck. Poultry science 0 41850063
2026 Functional and Expression Studies of iPSC-Derived Cardiomyocytes Carrying a Novel HCM-Associated MYPN Genetic Variant. Genes 0 42074575

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