Affinage

MVB12B

Multivesicular body subunit 12B · UniProt Q9H7P6

Length
319 aa
Mass
35.6 kDa
Annotated
2026-06-10
17 papers in source corpus 7 papers cited in narrative 7 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 5/5 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

MVB12B is the fourth subunit class of human ESCRT-I, associating with the core TSG101-VPS37 binary complex through conserved C-terminal sequence elements to form a complex containing one copy of each of the four subunit types (PMID:18005716). Its MABP domain adopts a β-prism fold with a hydrophobic membrane-anchoring loop and an electropositive patch that binds acidic phosphoinositide-containing membranes in a charge-density-dependent, non-stereoselective manner, allowing ESCRT-I to act as a coincidence detector for acidic phospholipids and protein ligands (PMID:22232651). Functionally, MVB12B is dispensable for canonical ubiquitin-dependent cargo sorting at the MVB, distinguishing it from UBAP1 and indicating specialization within the ESCRT-I subunit family (PMID:24284069). Instead, MVB12B is dedicated to unconventional and stress- or infection-induced trafficking routes: TBK1 phosphorylates MVB12B downstream of STING during intracellular bacterial infection, and this modification is essential for sorting bacterial DNA into extracellular vesicles that activate cGAS-STING signaling in bystander cells and suppress T-cell responses (PMID:30804548), and MVB12B is required for ER-stress-stimulated unconventional secretion of CFTRΔF508 (PMID:29969945). Its activity is further regulated by EGF-induced Tyr241/Tyr243 phosphorylation and Lys264/Lys290 ubiquitination that drive its instability and aggregation (PMID:20654576).

Mechanistic history

Synthesis pass · year-by-year structured walk · 7 steps
  1. 2007 High

    Established that MVB12B is a bona fide structural component of ESCRT-I rather than a peripheral associate, defining the four-subunit architecture of the human complex and a role in viral budding.

    Evidence Co-IP, hydrodynamic reconstitution, and HIV-1 budding/morphology assays with siRNA depletion and overexpression

    PMID:18005716

    Open questions at the time
    • Did not define how MVB12B contributes mechanistically to membrane budding beyond complex incorporation
    • No structural basis for TSG101-VPS37 binding resolved
  2. 2010 Medium

    Identified post-translational control of MVB12B by EGF-driven tyrosine phosphorylation and ubiquitination, linking receptor signaling to ESCRT-I subunit stability.

    Evidence Site-directed mutagenesis, Co-IP, EGF stimulation and proteasome inhibition in COS-7 cells

    PMID:20654576

    Open questions at the time
    • Kinase responsible for Tyr241/Tyr243 phosphorylation not identified
    • Functional consequence of aggregation for cargo handling not resolved
  3. 2012 High

    Resolved the structural basis for MVB12B membrane engagement, showing the MABP domain is a β-prism that reads acidic lipid charge density and supports a coincidence-detection model for ESCRT-I.

    Evidence 1.3-Å X-ray crystal structure, in vitro liposome binding, and live-cell localization

    PMID:22232651

    Open questions at the time
    • Specific physiological membranes engaged in cells not defined
    • How lipid binding is coordinated with protein-ligand recognition not directly tested
  4. 2013 Medium

    Demonstrated functional specialization within ESCRT-I by showing MVB12B is dispensable for ubiquitin-dependent MVB cargo sorting, unlike UBAP1.

    Evidence siRNA depletion, Co-IP, and EGF receptor sorting assay

    PMID:24284069

    Open questions at the time
    • The cargoes or pathways that DO require MVB12B were not identified here
    • Whether MVB12B pairs nonselectively with all VPS37 isoforms in cells not fully resolved
  5. 2018 Medium

    Placed MVB12B in a non-canonical secretory route, showing it is required for ER-stress-induced unconventional secretion of misfolded CFTR.

    Evidence ESCRT siRNA knockdown screen with CFTRΔF508 surface expression and Cl⁻ channel assays plus overexpression rescue

    PMID:29969945

    Open questions at the time
    • Direct interaction between MVB12B and CFTR not shown
    • Mechanism linking ESCRT-I to the unconventional secretory carrier undefined
  6. 2019 High

    Defined a signaling-coupled cargo-sorting function: TBK1 phosphorylation of MVB12B directs bacterial DNA into extracellular vesicles for paracrine innate immune signaling.

    Evidence Phosphoproteomic MS, MVB12B siRNA knockdown, EV isolation, bystander cGAS-STING activation, and T-cell proliferation/apoptosis assays

    PMID:30804548

    Open questions at the time
    • TBK1 phosphosite(s) on MVB12B not mapped here
    • How phosphorylation redirects DNA cargo into the EV pathway mechanistically unresolved
  7. 2025 Low

    Suggested a tumor-suppressive cellular phenotype for MVB12B in bladder urothelial carcinoma via overexpression effects on proliferation and migration.

    Evidence Overexpression in BLCA cell lines with proliferation/migration assays and PPI network analysis

    PMID:41510117

    Open questions at the time
    • Single-lab overexpression phenotype without rescue or in vivo validation
    • No mechanistic link between ESCRT-I activity and the anti-proliferative effect
    • Loss-of-function evidence absent

Open questions

Synthesis pass · forward-looking unresolved questions
  • It remains unknown which physiological cargoes MVB12B selectively routes and how its membrane-binding, phosphorylation, and ubiquitination states are integrated to switch between canonical ESCRT-I and unconventional secretory functions.
  • No unified model connecting MABP lipid binding to cargo selection
  • Substrate code distinguishing EV-DNA sorting from CFTR secretion not defined

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0008289 lipid binding 1 GO:0060090 molecular adaptor activity 1
Localization
GO:0005829 cytosol 1 GO:0005886 plasma membrane 1
Pathway
R-HSA-5653656 Vesicle-mediated transport 2 R-HSA-168256 Immune System 1 R-HSA-9609507 Protein localization 1
Complex memberships
ESCRT-I

Evidence

Reading pass · 7 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2007 MVB12B (and MVB12A) were identified as the fourth subunit class of human ESCRT-I, associating with the core TSG101-VPS37 binary complex through conserved C-terminal sequence elements. Hydrodynamic studies showed that soluble ESCRT-I contains one copy of each of the four subunit types. Both depletion and overexpression of MVB12 subunits inhibited HIV-1 infectivity and induced aberrant virion morphologies and altered Gag protein processing. Co-immunoprecipitation, hydrodynamic/sedimentation analysis, siRNA knockdown, HIV-1 budding assay, viral morphology by EM Cell host & microbe High 18005716
2012 The MVB12B MABP (MVB12-associated β-prism) domain adopts a β-prism fold with a hydrophobic membrane-anchoring loop and an electropositive phosphoinositide-binding patch, enabling binding to liposomes containing acidic lipids in a charge-density-dependent (non-stereoselective) manner. The MABP domain autonomously localizes to subcellular puncta and the plasma membrane, suggesting ESCRT-I acts as a coincidence detector for acidic phospholipids and protein ligands. 1.3-Å X-ray crystal structure, in vitro liposome-binding assay, subcellular localization by fluorescence microscopy Proceedings of the National Academy of Sciences of the United States of America High 22232651
2010 MVB12B undergoes ubiquitination at Lys264 and Lys290, leading to its instability and inclusion body formation in COS-7 cells. This ubiquitination is induced by EGF stimulation and is regulated by phosphorylation of Tyr241 and Tyr243 of MVB12B. MVB12A promotes aggregation of MVB12B, and these modifications collectively regulate ESCRT-I function. Site-directed mutagenesis, co-immunoprecipitation, EGF stimulation assay, proteasome inhibitor treatment, immunofluorescence Biochemical and biophysical research communications Medium 20654576
2013 MVB12B does not show selective pairing with specific VPS37 partners within ESCRT-I (in contrast to UBAP1, which selectively pairs with VPS37A). siRNA-mediated depletion of MVB12A and MVB12B, unlike depletion of UBAP1, does not disrupt ubiquitin-dependent cargo sorting at the MVB, indicating functional specialization among MVB12 family members. siRNA knockdown, co-immunoprecipitation, EGF receptor sorting assay Journal of cell science Medium 24284069
2019 MVB12B is phosphorylated by TBK1 (TANK-binding kinase 1) downstream of STING activation during intracellular bacterial infection, and this phosphorylation is essential for sorting bacterial DNA into extracellular vesicles (EVs). EVs carrying bacterial DNA are then delivered to bystander cells to activate cGAS-STING signaling, inhibit T-cell proliferation, and prime T cells for apoptosis. Phosphoproteomic mass spectrometry, siRNA knockdown of MVB12B, extracellular vesicle isolation and characterization, bystander cell stimulation assay, T-cell proliferation and apoptosis assays Nature microbiology High 30804548
2018 MVB12B knockdown inhibits unconventional secretion of CFTR (ΔF508) stimulated by ER stress, while MVB12B overexpression partially rescues cell-surface expression and Cl⁻ channel function of CFTRΔF508, placing MVB12B in the ESCRT/MVB pathway required for stress-induced unconventional CFTR trafficking. siRNA knockdown screen of ESCRT proteins, CFTRΔF508 cell-surface expression assay, Cl⁻ channel functional assay, MVB12B overexpression Autophagy Medium 29969945
2025 MVB12B overexpression suppressed proliferation and migration of bladder urothelial carcinoma (BLCA) cell lines (T24, UM-UC-3) in vitro, and protein-protein interaction network analysis confirmed MVB12B interactions with ESCRT components, consistent with a tumor-suppressive function. Overexpression in BLCA cell lines, proliferation and migration functional assays (in vitro), PPI network analysis Translational cancer research Low 41510117

Source papers

Stage 0 corpus · 17 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2019 Intracellular bacteria engage a STING-TBK1-MVB12b pathway to enable paracrine cGAS-STING signalling. Nature microbiology 108 30804548
2007 Identification of human MVB12 proteins as ESCRT-I subunits that function in HIV budding. Cell host & microbe 99 18005716
2018 Specific autophagy and ESCRT components participate in the unconventional secretion of CFTR. Autophagy 55 29969945
2012 Structural basis for membrane targeting by the MVB12-associated β-prism domain of the human ESCRT-I MVB12 subunit. Proceedings of the National Academy of Sciences of the United States of America 43 22232651
2014 A genome-wide association study of intra-ocular pressure suggests a novel association in the gene FAM125B in the TwinsUK cohort. Human molecular genetics 37 24518671
2016 Indexing Effects of Copy Number Variation on Genes Involved in Developmental Delay. Scientific reports 31 27363808
2013 The molecular basis for selective assembly of the UBAP1-containing endosome-specific ESCRT-I complex. Journal of cell science 30 24284069
2010 Distinct functions of human MVB12A and MVB12B in the ESCRT-I dependent on their posttranslational modifications. Biochemical and biophysical research communications 26 20654576
2021 Transcriptome-wide Mendelian randomization study prioritising novel tissue-dependent genes for glioma susceptibility. Scientific reports 13 33504897
2014 Protective effect of ischaemic preconditioning in total knee arthroplasty. European review for medical and pharmacological sciences 9 24899618
2024 Genetic Factors Associated with the Development of Neuropathy in Type 2 Diabetes. International journal of molecular sciences 5 38339094
2023 Cell-Free Genic Extrachromosomal Circular DNA Profiles of DNase Knockouts Associated with Systemic Lupus Erythematosus and Relation with Common Fragile Sites. Biomedicines 4 38255187
2020 Novel genetic variants of PIP5K1C and MVB12B of the endosome-related pathway predict cutaneous melanoma-specific survival. American journal of cancer research 4 33163277
2025 Transcriptome analysis of 3D4/21 cells expressing CSFV NS4B. Frontiers in microbiology 0 39967738
2025 Leveraging molecular-QTL co-association to predict novel disease-associated genetic loci using a graph convolutional neural network. PloS one 0 40493586
2025 Identification of Biomarkers for Right Ventricular Dysfunction in Idiopathic Dilated Cardiomyopathy Via Urinary Proteomics and Machine Learning. Journal of the American Heart Association 0 41404738
2025 Multivesicular body subunit 12B (MVB12B) overexpression represses proliferation and migration in bladder urothelial carcinoma. Translational cancer research 0 41510117

Missed literature

Know a paper Affinage missed for MVB12B? Flag it for the maintainers and the community.

No submissions yet.