Affinage

MT-CO2

Cytochrome c oxidase subunit 2 · UniProt P00403

Length
227 aa
Mass
25.6 kDa
Annotated
2026-06-14
40 papers in source corpus 6 papers cited in narrative 6 extracted findings
Cross-family judge vs UniProt: Affinage preferred

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

MT-CO2 (cytochrome c oxidase subunit II) is a mitochondrially encoded catalytic subunit of Complex IV that is obligatory for mitochondrial oxidative phosphorylation: ρ0 cells lacking mtDNA, and therefore MT-CO2 protein, show no mitochondrial oxygen consumption (PMID:36581766). Production of the mature protein depends on dedicated nuclear-encoded factors acting post-transcriptionally, as shown in yeast where loss of MSS2 abolishes Cox2 protein despite normal COX2 transcript synthesis and processing (PMID:7857963), and a conserved Thr/Ser residue near the mature N-terminus is critical for subunit stability or assembly, since its mutation in the fungal ortholog reduces Cox2 levels and causes cytochrome aa3 deficiency (PMID:1657411). In human cells MT-CO2 serves as a validated mitochondrial inner-membrane marker, and its gene locus is engaged by the mitochondrial base-excision/single-strand-break repair machinery NEIL2 and PNKP (PMID:22130663). MT-CO2 expression is dynamically regulated in disease states: α-synuclein upregulates MT-CO2 in dopaminergic cells, and MT-CO2 knockdown reverses α-synuclein-induced ATP depletion, membrane-potential loss, ROS elevation, and cytochrome c release, linking it to mitochondrial dysfunction and apoptotic signaling (PMID:30776354).

Mechanistic history

Synthesis pass · year-by-year structured walk · 6 steps
  1. 1991 Medium

    Identified a specific conserved residue whose integrity governs Cox2 stability, defining a sequence determinant of subunit assembly rather than catalysis.

    Evidence DNA sequencing and mitochondrial translation product analysis of a Neurospora crassa COXII Thr→Ile mutant

    PMID:1657411

    Open questions at the time
    • Mechanism by which the residue stabilizes the subunit not resolved
    • Demonstrated in fungal ortholog, not human MT-CO2
    • No structural data on the affected region
  2. 1995 Medium

    Established that Cox2 protein production requires a dedicated nuclear-encoded factor acting after transcription, separating transcript availability from protein accumulation.

    Evidence Genetic epistasis in S. cerevisiae mss2-1 mutant: COX2 transcripts present but Cox2 protein absent

    PMID:7857963

    Open questions at the time
    • Molecular step at which MSS2 acts (translation vs assembly) not defined
    • Human ortholog of MSS2 not addressed
    • No biochemical reconstitution
  3. 2011 Medium

    Placed the MT-CO2 mitochondrial locus under active surveillance by the mt-BER/SSBR machinery and validated MT-CO2 as a mitochondrial localization marker.

    Evidence Confocal co-localization, ChIP, and proximity ligation assay showing NEIL2/PNKP association with the MT-CO2 gene in human mitochondria

    PMID:22130663

    Open questions at the time
    • Functional consequence of repair at this locus not measured
    • Whether MT-CO2 DNA is preferentially damaged unknown
    • No link to MT-CO2 protein output established
  4. 2019 Medium

    Connected MT-CO2 expression level to disease-relevant mitochondrial dysfunction, showing it is not merely a constitutive subunit but a regulated effector.

    Evidence Microarray/western showing α-synuclein upregulation of MT-CO2 and siRNA knockdown rescuing ATP, membrane potential, ROS, and cytochrome c phenotypes in SH-SY5Y cells

    PMID:30776354

    Open questions at the time
    • Mechanism by which MT-CO2 upregulation causes dysfunction unclear
    • Single cell line, single lab
    • Relationship to Complex IV assembly not examined
  5. 2022 Medium

    Confirmed MT-CO2 as an obligate component of oxidative phosphorylation using a clean genetic-null model.

    Evidence ρ0 pancreatic cancer cells lacking mtDNA/MT-CO2 protein show abolished oxygen consumption; western blot confirmation

    PMID:36581766

    Open questions at the time
    • ρ0 loss is not MT-CO2-specific (entire mtDNA absent)
    • Does not isolate MT-CO2 contribution from other subunits
    • Ascorbate resistance phenotype mechanism not defined
  6. 2022 Low

    Positioned MT-CO2 protein abundance downstream of metabolic reprogramming, linking respiratory subunit levels to a regulatory transcription/metabolic axis.

    Evidence Lentiviral FBP1 overexpression in MV4-11 AML cells reduces MT-CO2 protein with impaired mitochondrial homeostasis and increased apoptosis

    PMID:36232688

    Open questions at the time
    • No direct MT-CO2 manipulation to establish causality
    • Correlative western blot only
    • FBP1→MT-CO2 mechanism unknown

Open questions

Synthesis pass · forward-looking unresolved questions
  • How MT-CO2 expression is regulated in human cells and how its level mechanistically controls Complex IV assembly and apoptotic signaling remains unresolved.
  • No human counterpart of yeast MSS2 characterized in the corpus
  • No structural or in vitro reconstitution data for human MT-CO2
  • Direct link between MT-CO2 level and Complex IV catalytic function not established

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Localization
GO:0005739 mitochondrion 2
Pathway
R-HSA-1430728 Metabolism 1
Partners
Complex memberships
cytochrome c oxidase (Complex IV)

Evidence

Reading pass · 6 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1995 The nuclear-encoded MSS2 gene is required for expression of the mitochondrial cytochrome c oxidase subunit 2 (Cox2) protein in Saccharomyces cerevisiae; mss2-1 mutant cells lack Cox2 protein despite normal COX2 transcript synthesis and processing, placing MSS2 post-transcriptionally upstream of Cox2 production. Genetic epistasis / mutant analysis: COX2 transcripts present but Cox2 protein absent in mss2-1 mutant; MSS2 gene cloned and sequenced Biochimica et biophysica acta Medium 7857963
1991 A point mutation in the Neurospora crassa COXII gene (Thr→Ile at residue 27 of the precursor / residue 15 of mature subunit 2) causes deficiency of cytochrome aa3 and reduced Cox2 protein levels, demonstrating that this conserved Thr/Ser residue is functionally critical for Cox2 stability or assembly. DNA sequencing of COXI and COXII in the [exn-5] mutant; mitochondrial translation product analysis; heterokaryon segregation analysis Current genetics Medium 1657411
2011 NEIL2 and PNKP co-localize with MT-CO2 in human mitochondria and associate (by chromatin immunoprecipitation) with the MT-CO2 mitochondrial gene locus, establishing MT-CO2 as a marker for mitochondrial localization and demonstrating that the mt-BER/SSBR machinery operates at the MT-CO2 locus. Confocal co-localization with MT-CO2 as mitochondrial marker; ChIP showing NEIL2/PNKP association with MT-CO2 gene; proximity ligation assay The Journal of biological chemistry Medium 22130663
2019 In SH-SY5Y dopaminergic cells, exogenous α-synuclein upregulates MT-CO2 expression, and siRNA-mediated knockdown of MT-CO2 reverses α-synuclein-induced ATP depletion, mitochondrial membrane potential loss, and ROS elevation, indicating that MT-CO2 upregulation mediates α-synuclein-induced mitochondrial dysfunction. MT-CO2 knockdown also reduced cytochrome c release and altered BCL2-family protein levels. Gene microarray and western blot to detect MT-CO2 upregulation; siRNA knockdown of MT-CO2 with readouts of ATP, mitochondrial membrane potential, ROS, cytochrome c release, and BCL2-family proteins Experimental cell research Medium 30776354
2022 FBP1 overexpression in AML cells reduces MT-CO2 protein expression concomitant with impaired mitochondrial homeostasis and increased apoptosis, placing MT-CO2 downstream of FBP1-mediated metabolic reprogramming in leukemic cells. Lentiviral FBP1 overexpression in MV4-11 cells; western blot for MT-CO2 protein; measurements of mitochondrial oxygen consumption and PINK1 levels International journal of molecular sciences Low 36232688
2022 ρ0 pancreatic cancer cells (lacking mtDNA and therefore lacking MT-CO2 protein) show no mitochondrial oxygen consumption, confirming MT-CO2 as an obligate component of mitochondrial oxidative phosphorylation; these ρ0 cells are more resistant to pharmacological ascorbate-induced cell death than parental cells. Generation of ρ0 cells by mitochondrial overexpression of Y147A mutant uracil-N-glycosylase or HSV protein; MT-CO2 protein absence confirmed by western blot; oxygen consumption rate measured Scientific reports Medium 36581766

Source papers

Stage 0 corpus · 40 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2013 Thermogenesis is involved in the body-fat lowering effects of resveratrol in rats. Food chemistry 96 23790948
2012 Hepatic lipid metabolic pathways modified by resveratrol in rats fed an obesogenic diet. Nutrition (Burbank, Los Angeles County, Calif.) 83 23274094
2011 Role of human DNA glycosylase Nei-like 2 (NEIL2) and single strand break repair protein polynucleotide kinase 3'-phosphatase in maintenance of mitochondrial genome. The Journal of biological chemistry 76 22130663
2002 Reduced amount of mitochondrial DNA in aged human muscle. Journal of applied physiology (Bethesda, Md. : 1985) 71 12496142
1998 Differences in gene expression between sleep and waking as revealed by mRNA differential display. Brain research. Molecular brain research 70 9602159
2015 Towards a universal barcode of oomycetes--a comparison of the cox1 and cox2 loci. Molecular ecology resources 68 25728598
2016 Role of Mitochondrial DNA Copy Number Alteration in Human Renal Cell Carcinoma. International journal of molecular sciences 53 27231905
2012 Effect of exercise on mouse liver and brain bioenergetic infrastructures. Experimental physiology 40 22613742
2016 Carbon monoxide stimulates astrocytic mitochondrial biogenesis via L-type Ca2+ channel-mediated PGC-1α/ERRα activation. Biochemical and biophysical research communications 39 27639646
2018 Proteomic profile of sex-sorted bull sperm evaluated by SWATH-MS analysis. Animal reproduction science 28 30274742
2006 Molecular evolution at the cytochrome oxidase subunit 2 gene among divergent populations of the intertidal copepod, Tigriopus californicus. Journal of molecular evolution 26 16752213
2017 4-Hydroxycinnamic acid protects mice from cigarette smoke-induced pulmonary inflammation via MAPK pathways. Food and chemical toxicology : an international journal published for the British Industrial Biological Research Association 18 29054824
2014 Identification of novel genes involved in gastric carcinogenesis by suppression subtractive hybridization. Human & experimental toxicology 18 24812152
2000 Typing of Candida glabrata in clinical isolates by comparative sequence analysis of the cytochrome c oxidase subunit 2 gene distinguishes two clusters of strains associated with geographical sequence polymorphisms. Journal of clinical microbiology 18 10618092
2019 α-Synuclein induced mitochondrial dysfunction via cytochrome c oxidase subunit 2 in SH-SY5Y cells. Experimental cell research 17 30776354
2013 A microarray analysis of gene expression patterns during early phases of newt lens regeneration. Molecular vision 15 23378727
2021 Korean Red Ginseng Improves Astrocytic Mitochondrial Function by Upregulating HO-1-Mediated AMPKα-PGC-1α-ERRα Circuit after Traumatic Brain Injury. International journal of molecular sciences 14 34884886
2024 Ectoparasites of European hedgehogs (Erinaceus europaeus) in Germany and their health impact. Parasites & vectors 13 38167501
2022 Dual Effects of Korean Red Ginseng on Astrocytes and Neural Stem Cells in Traumatic Brain Injury: The HO-1-Tom20 Axis as a Putative Target for Mitochondrial Function. Cells 13 35269514
2020 Platelet proteome changes in dogs with congestive heart failure. BMC veterinary research 11 33256720
2022 FBP1-Altered Carbohydrate Metabolism Reduces Leukemic Viability through Activating P53 and Modulating the Mitochondrial Quality Control System In Vitro. International journal of molecular sciences 10 36232688
2008 Bile-induced genes in Clonorchis sinensis metacercariae. Parasitology research 9 18682984
2022 The role of mitochondria in pharmacological ascorbate-induced toxicity. Scientific reports 8 36581766
2023 Effects of Mulberry Leaf Extract on the Liver Function of Juvenile Spotted Sea Bass (Lateolabrax maculatus). Aquaculture nutrition 7 37908498
2022 The longest mitochondrial protein in metazoans is encoded by the male-transmitted mitogenome of the bivalve Scrobicularia plana. Biology letters 7 35673874
2020 Urethral dysfunction in a rat model of chemically induced prostatic inflammation: potential involvement of the MRP5 pump. American journal of physiology. Renal physiology 7 32036697
2008 Changes in mitochondrial gene and protein expression in grass shrimp, Palaemonetes pugio, exposed to chronic hypoxia. Marine environmental research 7 18378300
2023 Myzomyia and Pyretophorus series of Anopheles mosquitoes acting as probable vectors of the goat malaria parasite Plasmodium caprae in Thailand. Scientific reports 6 36599869
2023 Cardioprotective effect of Interleukin-11 against warm ischemia-reperfusion injury in a rat heart donor model. European journal of pharmacology 5 37923160
2024 Morphology, phylogeny, and host range of the novel early-diverging oomycete Sirolpidium dinoletiferum sp. nov. parasitizing marine dinoflagellates. Harmful algae 4 38331547
2022 Levels of Coenzyme Q10 and Several COQ Proteins in Human Astrocytoma Tissues Are Inversely Correlated with Malignancy. Biomolecules 4 35204836
2022 Molecular data reveal a new species of Seuratascaris Sprent, 1985 (Nematoda: Ascaridoidea) from Quasipaa exilispinosa (Liu & Hu) (Amphibia: Anura). Parasitology international 4 36403749
2016 Independent AMP and NAD signaling regulates C2C12 differentiation and metabolic adaptation. Journal of physiology and biochemistry 4 27393564
1995 The nuclear-encoded MSS2 gene is involved in the expression of the mitochondrial cytochrome-c oxidase subunit 2 (Cox2). Biochimica et biophysica acta 4 7857963
2025 A novel paracetamol derivative alleviates lipopolysaccharide-induced neuroinflammation. European journal of pharmacology 2 39986592
2022 Genome-Wide Identification of Potential mRNAs in Drought Response in Wheat (Triticum aestivum L.). Genes 2 36292791
2019 Down-regulation of mitochondrial NADH and cytochrome b gene associated with high tumor stages in head and neck squamous cell carcinoma. Archives of oral biology 2 30658318
2011 Effects of protein extract from head-foot tissue of Oncomelania hupensis on the growth and gene expression of mother sporocysts of Schistosoma japonicum. Parasitology research 2 21800125
1991 Alteration of the cytochrome c oxidase subunit 2 gene in the [exn-5] mutant of Neurospora crassa. Current genetics 2 1657411
2024 Exploring the potential of Paris polyphylla var. yunnanensis pollen manipulation in modifying seed dormancy. Frontiers in plant science 0 38841278

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