Affinage

MRPL28

Large ribosomal subunit protein bL28m · UniProt Q13084

Length
256 aa
Mass
30.2 kDa
Annotated
2026-06-10
10 papers in source corpus 2 papers cited in narrative 2 extracted findings
Cross-family judge faithfulness: 3/3 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

MRPL28 (bL28m) is a structural component of the mitochondrial ribosomal large subunit that links mitochondrial protein synthesis to oxidative metabolism (PMID:19753307, PMID:28931599). Its yeast ortholog MrpL28 (mL40) assembles into a central-protuberance subcomplex of the mitoribosome together with MrpL35, MrpL7, Mrp7, MrpL36, and MrpL17, a subcomplex that coordinates Cox1 synthesis with cytochrome c oxidase assembly (PMID:28931599). Consistent with this role in sustaining the respiratory machinery, knockdown of MRPL28 in pancreatic tumor cells lowers mitochondrial activity and shifts metabolism toward glycolysis; this loss suppresses growth in vitro yet accelerates tumor growth in vivo, identifying MRPL28 as a modulator of oxygen consumption as a rate-limiting determinant of tumor proliferation (PMID:19753307). Beyond these findings, no further mechanistic detail has been characterized in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 2 steps
  1. 2009 Medium

    Established that MRPL28 is a functional regulator of mitochondrial metabolism whose loss rewires the balance between oxidative phosphorylation and glycolysis with opposing effects on cell growth and tumor growth.

    Evidence shRNA knockdown in pancreatic tumor cells with in vitro growth, in vivo tumor growth, oxygen consumption, and glycolysis readouts

    PMID:19753307

    Open questions at the time
    • Did not define the molecular role of MRPL28 within the mitoribosome
    • Mechanism linking reduced mitochondrial activity to accelerated in vivo tumor growth not resolved
    • Single lab, single gene within a broader screen
  2. 2017 Medium

    Defined the structural and functional context of MRPL28 by placing its yeast ortholog in a mitoribosomal central-protuberance subcomplex coupling Cox1 synthesis to COX assembly.

    Evidence Co-immunoprecipitation/subcomplex isolation in yeast with respiratory-defective mutant analysis and mitochondrial protein synthesis assays

    PMID:28931599

    Open questions at the time
    • Subcomplex membership and Cox1-coordination role shown in yeast, not confirmed in human mitoribosomes
    • Direct molecular mechanism by which the subcomplex coordinates translation with COX assembly not established
    • Connection between this structural role and the tumor metabolic phenotype not directly tested

Open questions

Synthesis pass · forward-looking unresolved questions
  • How the mitoribosomal structural role of MRPL28 mechanistically drives the metabolic and tumor-growth phenotypes in human cells remains unresolved.
  • No human mitoribosome subcomplex characterization in the corpus
  • No structural model of human MRPL28 in the timeline
  • Causal link between Cox1/COX coordination and the glycolytic shift untested

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0005198 structural molecule activity 1
Pathway
R-HSA-1430728 Metabolism 1 R-HSA-392499 Metabolism of proteins 1
Complex memberships
mitochondrial large ribosomal subunit (central protuberance)

Evidence

Reading pass · 2 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2009 Knockdown of MRPL28 in pancreatic tumor cells decreased mitochondrial activity and increased glycolysis, but paradoxically decreased cellular growth in vitro while accelerating tumor growth in vivo, placing MRPL28 as a regulator of mitochondrial metabolism whose loss modulates oxygen consumption as a rate-limiting substrate for tumor proliferation. shRNA knockdown with in vitro growth assay and in vivo tumor growth measurement; oxygen consumption and glycolysis readouts PloS one Medium 19753307
2017 The yeast ortholog MrpL28 (mL40) assembles into a mitoribosomal subcomplex together with MrpL35 (mL38), MrpL7 (uL5), Mrp7 (bL27), MrpL36 (bL31), and MrpL17 (mL46) as part of the mitoribosomal central protuberance, linking this subcomplex to coordination of Cox1 synthesis and cytochrome c oxidase (COX) assembly. Co-immunoprecipitation / subcomplex isolation in yeast; respiratory-defective mutant analysis; mitochondrial protein synthesis assay Molecular biology of the cell Medium 28931599

Source papers

Stage 0 corpus · 10 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2009 Oxygen consumption can regulate the growth of tumors, a new perspective on the Warburg effect. PloS one 142 19753307
2013 Differential DNA methylation profiles of infants exposed to maternal asthma during pregnancy. Pediatric pulmonology 56 24166889
2021 DNA methylation differences associated with social anxiety disorder and early life adversity. Translational psychiatry 39 33542190
2017 MrpL35, a mitospecific component of mitoribosomes, plays a key role in cytochrome c oxidase assembly. Molecular biology of the cell 32 28931599
2023 A novel microtubule inhibitor promotes tumor ferroptosis by attenuating SLC7A11/GPX4 signaling. Cell death discovery 20 38086802
2013 QTL analysis of dietary obesity in C57BL/6byj X 129P3/J F2 mice: diet- and sex-dependent effects. PloS one 17 23922663
2023 Cryostress induces fragmentation and alters the abundance of sperm transcripts associated with fertilizing competence and reproductive processes in buffalo. Cell and tissue research 6 37079096
2002 Genomic differences between Candida glabrata and Saccharomyces cerevisiae around the MRPL28 and GCN3 loci. Yeast (Chichester, England) 6 12125055
2012 Characterization of TsMRP-L28, a mitochondrial ribosomal protein L28 from the parasitic nematode Trichinella spiralis. Gene 3 23089495
2026 Effects of Hybridization and Triploidization on Transcription of Core Metabolic and Stress Response Genes in Rainbow Trout (Oncorhynchus mykiss) × Brook Trout (Salvelinus fontinalis) Hybrids-Preliminary Results. Current issues in molecular biology 0 41899471

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