Affinage

MMP23B

Matrix metalloproteinase-23 · UniProt O75900

Length
390 aa
Mass
43.9 kDa
Annotated
2026-04-28
34 papers in source corpus 6 papers cited in narrative 8 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

MMP23B is an atypical matrix metalloproteinase containing a catalytic domain with the consensus HEXXH zinc-binding motif but lacking the conserved cysteine switch residue used for autoinhibition, and featuring unique cysteine-rich and interleukin-1 receptor-related domains (PMID:9740677). MMP23B directly interacts with TNF and mediates its release from the cell membrane, functioning upstream of TNF signaling to promote hepatocyte proliferation during liver development, as established by genetic epistasis in zebrafish where TNF overexpression rescued mmp23b loss-of-function but not vice versa (PMID:21064033). In endometrial cancer cells, MMP23B promotes cell survival, migration, and invasion while suppressing caspase-mediated apoptosis (PMID:38782818), and in intestinal epithelium it regulates tight junction integrity and mitochondrial function, with conditional knockout mice showing protection against mucosal barrier disruption (PMID:39280187).

Mechanistic history

Synthesis pass · year-by-year structured walk · 3 steps
  1. 1998 Medium

    Identification of MMP23B as a structurally atypical metalloproteinase — possessing the HEXXH zinc-binding catalytic motif but lacking the canonical cysteine switch — established that the MMP family includes members with fundamentally different activation mechanisms and novel domain architectures (cysteine-rich and IL-1 receptor-related domains).

    Evidence Gene isolation, sequence characterization, and domain analysis of human chromosome 1p36.3

    PMID:9740677 PMID:9750192

    Open questions at the time
    • No enzymatic activity assay was performed to confirm catalytic function
    • Substrate specificity unknown
    • No structural model of the protein
  2. 2010 High

    Demonstration that MMP23B acts upstream of TNF signaling to control hepatocyte proliferation answered how this protease connects to a defined developmental signaling pathway: it physically interacts with TNF and mediates its membrane release, placing it as a TNF-processing enzyme required for liver organogenesis.

    Evidence Morpholino knockdown and reciprocal mRNA rescue epistasis in zebrafish; biochemical interaction and membrane-release assays in human cell culture

    PMID:21064033

    Open questions at the time
    • Whether MMP23B directly cleaves TNF or releases it through an indirect mechanism was not resolved
    • Mammalian in vivo confirmation of the liver development role is lacking
    • Relationship to TACE/ADAM17-mediated TNF shedding is undefined
  3. 2024 Medium

    Functional studies in cancer cells and intestinal epithelium expanded MMP23B's roles beyond TNF processing, revealing it promotes cell survival by suppressing caspase-dependent apoptosis and regulates epithelial barrier integrity through tight junction and mitochondrial homeostasis.

    Evidence siRNA knockdown in endometrial cancer cells with viability, migration, invasion, and caspase expression assays; intestinal epithelial-specific conditional knockout (Villin-MMP23B flox/flox) mice with tight junction and mitochondrial readouts

    PMID:38782818 PMID:39280187

    Open questions at the time
    • Direct substrates mediating the anti-apoptotic and tight junction effects are unknown
    • Whether the barrier and survival phenotypes depend on TNF signaling is untested
    • Findings are each from single laboratories without independent replication

Open questions

Synthesis pass · forward-looking unresolved questions
  • The direct enzymatic substrates of MMP23B, the structural basis for its atypical activation mechanism, and the extent to which its diverse biological effects (TNF processing, anti-apoptosis, barrier regulation) share a common proteolytic mechanism remain unresolved.
  • No in vitro substrate cleavage assay has been reported
  • No crystal or cryo-EM structure exists
  • Physiological redundancy with the nearly identical MMP21/MMP23A paralog is unexplored

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0140096 catalytic activity, acting on a protein 2
Localization
GO:0005886 plasma membrane 1
Pathway
R-HSA-162582 Signal Transduction 2 R-HSA-5357801 Programmed Cell Death 1
Partners
TNF

Evidence

Reading pass · 8 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1998 MMP23B (then called MMP22) was identified as a novel matrix metalloproteinase gene on human chromosome 1p36.3, encoding a protein with prepro, catalytic, cysteine-rich, interleukin-1 receptor-related, and proline-rich domains; its catalytic domain contains the consensus HEXXH zinc-binding region required for enzyme activation, and notably lacks the conserved 'cysteine switch' residue involved in autocatalytic activation of many metalloproteinases. Gene isolation, sequence characterization, domain analysis Genomics Medium 9740677
1998 MMP22 (MMP23B) and MMP21 genes are each located less than 1 kb from the 3' regions of Cdc2L2 and Cdc2L1, respectively, in a duplicated genomic region on chromosome 1p36.3, organized in a tail-to-tail configuration with their linked Cdc2L genes. Genomic mapping, sequence analysis Genome research Medium 9750192
2010 Zebrafish mmp23b is required for normal hepatocyte proliferation and liver development; morpholino knockdown caused reduced liver size while pancreas and gut development remained relatively normal. Morpholino knockdown in zebrafish, liver size phenotypic analysis Hepatology (Baltimore, Md.) High 21064033
2010 Zebrafish mmp23b functions through the TNF signaling pathway in liver development: knockdown of tnfa or tnfb phenocopied mmp23b morphants, and overexpression of tnfa or tnfb rescued liver defects in mmp23b morphants but not vice versa, establishing mmp23b upstream of TNF signaling. Genetic epistasis in zebrafish (morpholino knockdown, mRNA overexpression rescue experiments) Hepatology (Baltimore, Md.) High 21064033
2010 Human MMP23B directly interacts with TNF and mediates TNF release from the cell membrane, as demonstrated biochemically in a cell culture system. Biochemical interaction assay in cell culture (direct interaction and membrane release assay) Hepatology (Baltimore, Md.) Medium 21064033
2024 Silencing of MMP23B in endometrial cancer cells reduced cell viability, inhibited migration and invasion, and upregulated expression of apoptotic caspases (CASP3, CASP8, CASP9), indicating MMP23B promotes cell survival and suppresses apoptosis in these cells. siRNA knockdown, CCK8 viability assay, scratch assay, transwell invasion assay, RT-qPCR Reproductive sciences (Thousand Oaks, Calif.) Medium 38782818
2024 MMP23B is elevated in intestinal tissue of diabetic mice and is associated with tight junction disruption, increased mucosal permeability, and mitochondrial dysfunction (reactive oxygen species accumulation, mitochondrial membrane potential depolarization); dexmedetomidine reduces MMP23B levels and reverses these defects, validated using intestinal epithelial-specific MMP23B conditional knockout (Villin-MMP23B flox/flox) mice. Conditional knockout mice (Villin-MMP23B flox/flox), immunofluorescence, in vitro Caco-2 cell culture, tight junction analysis World journal of diabetes Medium 39280187
2020 IL-18 induces MMP-22 (MMP23B) expression in human aortic smooth muscle cells, as shown by immunoblot analysis. Immunoblot (Western blot) in human aortic smooth muscle cells treated with IL-18 Journal of Zhejiang University. Science. B Low 28786243

Source papers

Stage 0 corpus · 34 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2009 A novel signaling network essential for regulating Pseudomonas aeruginosa biofilm development. PLoS pathogens 165 19936057
2015 1p36 deletion syndrome: an update. The application of clinical genetics 123 26345236
2012 Microcolony formation by the opportunistic pathogen Pseudomonas aeruginosa requires pyruvate and pyruvate fermentation. Molecular microbiology 68 22931250
1998 Isolation and characterization of two novel metalloproteinase genes linked to the Cdc2L locus on human chromosome 1p36.3. Genomics 51 9740677
1998 Duplication of a genomic region containing the Cdc2L1-2 and MMP21-22 genes on human chromosome 1p36.3 and their linkage to D1Z2. Genome research 51 9750192
2012 Intraclonal diversity of the Pseudomonas aeruginosa cystic fibrosis airway isolates TBCF10839 and TBCF121838: distinct signatures of transcriptome, proteome, metabolome, adherence and pathogenicity despite an almost identical genome sequence. Environmental microbiology 46 22882573
2012 AP-1 transcription factors, mucin-type molecules and MMPs regulate the IL-11 mediated invasiveness of JEG-3 and HTR-8/SVneo trophoblastic cells. PloS one 27 22235337
2010 Mmp23b promotes liver development and hepatocyte proliferation through the tumor necrosis factor pathway in zebrafish. Hepatology (Baltimore, Md.) 26 21064033
2014 Genetic analysis of the assimilation of C5-dicarboxylic acids in Pseudomonas aeruginosa PAO1. Journal of bacteriology 25 24794562
2009 Genome-wide identification of Xenopus matrix metalloproteinases: conservation and unique duplications in amphibians. BMC genomics 25 19222855
2015 Pseudomonas aeruginosa MifS-MifR Two-Component System Is Specific for α-Ketoglutarate Utilization. PloS one 21 26114434
2020 Increased expression of extracellular matrix metalloproteinase inducer (EMMPRIN) and MMP10, MMP23 in inflammatory bowel disease: Cross-sectional study. Scandinavian journal of immunology 20 32853407
2014 Blood cells transcriptomics as source of potential biomarkers of articular health improvement: effects of oral intake of a rooster combs extract rich in hyaluronic acid. Genes & nutrition 14 25024048
2020 Abnormal Hypermethylation of CpG Dinucleotides in Promoter Regions of Matrix Metalloproteinases Genes in Breast Cancer and Its Relation to Epigenomic Subtypes and HER2 Overexpression. Biomedicines 13 32397602
2018 MMP23B expression and protein levels in blood and urine are associated with bladder cancer. Carcinogenesis 13 30052775
2017 Production of Macrophage Inhibitory Factor (MIF) by Primary Sertoli Cells; Its Possible Involvement in Migration of Spermatogonial Cells. Journal of cellular physiology 13 27925200
2021 Comprehensive analysis of matrix metalloproteinases and their inhibitors in head and neck squamous cell carcinoma. Acta oncologica (Stockholm, Sweden) 10 34879791
2016 Intracellular lipid dysregulation interferes with leukocyte function in the ovaries of meat-type hens under unrestricted feed intake. Animal reproduction science 9 26874430
2023 β-Lapachone Exerts Anticancer Effects by Downregulating p53, Lys-Acetylated Proteins, TrkA, p38 MAPK, SOD1, Caspase-2, CD44 and NPM in Oxaliplatin-Resistant HCT116 Colorectal Cancer Cells. International journal of molecular sciences 8 37373014
2017 Interleukin-18, matrix metalloproteinase-22 and -29 are independent risk factors of human coronary heart disease. Journal of Zhejiang University. Science. B 8 28786243
2020 MifS, a DctB family histidine kinase, is a specific regulator of α-ketoglutarate response in Pseudomonas aeruginosa PAO1. Microbiology (Reading, England) 7 32553056
2023 Identification of the Immune Subtypes for the Prediction of Metastasis in Pancreatic Neuroendocrine Tumors. Neuroendocrinology 6 36871552
2021 Analysis of genes associated with proinflammatory and profibrotic pathways upregulated in ischemia-induced chronic kidney disease in cats. American journal of veterinary research 6 34166083
2016 Is 1p36 deletion associated with anterior body wall defects? American journal of medical genetics. Part A 5 27144803
2011 Molecular characterization of porcine MMP19 and MMP23B genes and its association with immune traits. International journal of biological sciences 4 21927579
2023 Genomic selection pressure discovery using site-frequency spectrum and reduced local variability statistics in Pakistani Dera-Din-Panah goat. Tropical animal health and production 3 37750990
2022 A bibliometric review of peripartum cardiomyopathy compared to other cardiomyopathies using artificial intelligence and machine learning. Biophysical reviews 3 35340600
2022 The Enhancer-Binding Protein MifR, an Essential Regulator of α-Ketoglutarate Transport, Is Required for Full Virulence of Pseudomonas aeruginosa PAO1 in a Mouse Model of Pneumonia. Infection and immunity 3 36125307
2024 The Downregulation of MMP23B Facilitates the Suppression of Vitality and Induction of Apoptosis in Endometrial Cancer Cells. Reproductive sciences (Thousand Oaks, Calif.) 2 38782818
2024 Dexmedetomidine ameliorates diabetic intestinal injury by promoting the polarization of M2 macrophages through the MMP23B pathway. World journal of diabetes 2 39280187
2017 Repeated measurement of Mo2 in small aquatic organisms: a manual intermittent flow respirometer using off-the-shelf components. Journal of applied physiology (Bethesda, Md. : 1985) 2 29212670
2025 Potential Role of Tumor-derived MIF in B-Cell Antigen Presentation in Lung Adenocarcinoma: Single-cell and TCGA Analyses. Anticancer research 1 41318120
2025 Cohesin Complex Interacting with Promoters of MMP Genes for in Pterygium Occurrence. Current eye research 0 39819270
2025 Prenatally diagnosed chromosome 1p36 deletions: a retrospective case series, literature review, and genotype-phenotype correlations. BMC medical genomics 0 41327254