Affinage

MAN1B1

Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase · UniProt Q9UKM7

Length
699 aa
Mass
79.6 kDa
Annotated
2026-06-10
23 papers in source corpus 10 papers cited in narrative 10 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 6/6 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

MAN1B1 encodes a Golgi-localized alpha-1,2-mannosidase (ERManI) that functions in N-glycoprotein quality control and endoplasmic-reticulum-associated degradation (ERAD) (PMID:21763484, PMID:21697506). Endogenous human ERManI resides predominantly in the Golgi rather than the ER, where it is O-glycosylated and generates the mannose-trimmed glycan signal that tags misfolded N-glycoproteins for proteasomal degradation; redistributing it toward the ER accelerates glycan trimming of misfolded alpha1-antitrypsin but not substrate degradation, placing the tagging step in the Golgi (PMID:21697506). MAN1B1 acts through two mechanistically distinct routes: a conventional catalysis-dependent system requiring an intact luminal active site to accelerate degradation of misfolded alpha1-antitrypsin variants NHK and ATZ, and an unconventional catalysis-independent gatekeeper function in which an extended N-terminal cytoplasmic tail and a conserved luminal stem decapeptide route misfolded substrates for degradation without glycan trimming (PMID:24627495, PMID:32958677). Beyond host quality control, MAN1B1 is recruited by the ER-phagy receptor Membralin into a Membralin-MAN1B1-VCP complex that selectively directs densely glycosylated viral envelope glycoproteins to lysosomal degradation via a ubiquitin-independent, LC3-dependent pathway, and its loss enhances pseudoviral infectivity (PMID:41324484); consistent with a direct antiviral role, ERManI physically interacts with and is required for ERAD of HIV-1 envelope glycoprotein (PMID:26205822). MAN1B1 protein stability is set by ERK-dependent control of its interaction with the E3 ubiquitin ligase HRD1, and elevated MAN1B1 promotes CD47 glycosylation and tumor immune evasion (PMID:40493414). Loss-of-function mutations at conserved catalytic residues cause altered Golgi morphology and accumulation of hybrid-type N-glycans in patient cells, defining a congenital disorder of glycosylation (PMID:21763484, PMID:24348268).

Mechanistic history

Synthesis pass · year-by-year structured walk · 10 steps
  1. 2011 Medium

    Establishing that MAN1B1 is an alpha-1,2-mannosidase whose catalytic activity is required for normal function answered whether the gene's disease relevance is enzymatic.

    Evidence Sanger sequencing of patients plus kinetic and expression assays of missense mutants in mammalian cells

    PMID:21763484

    Open questions at the time
    • Did not localize the enzyme or define which substrates it acts on
    • Does not separate loss of catalysis from loss of protein stability as the disease driver
  2. 2011 High

    Localizing endogenous ERManI to the Golgi rather than the ER reassigned where the ERAD glycan-tagging signal is generated, overturning the assumption of ER residence.

    Evidence Subcellular fractionation, immunofluorescence, O-glycosylation analysis, COPI-motif redistribution, and pulse-chase degradation in human cells

    PMID:21697506

    Open questions at the time
    • Mechanism coupling Golgi trimming to downstream proteasomal delivery not defined
    • Did not address catalysis-independent functions
  3. 2013 Medium

    Patient-derived cells linked MAN1B1 loss to altered Golgi morphology and hybrid-type N-glycan accumulation, connecting the enzyme defect to a cellular and glycomic phenotype.

    Evidence Exome sequencing, fibroblast immunofluorescence, and glycan analysis

    PMID:24348268

    Open questions at the time
    • Causality between Golgi dilatation and mannosidase loss not mechanistically resolved
  4. 2013 Medium

    Identification of MAN1B1 as a miR-125b target with proliferation/migration/invasion phenotypes raised a quality-control-independent role in hepatocellular carcinoma.

    Evidence 3'UTR reporter, RNAi knockdown, and functional cell assays in hepatoma cells

    PMID:23940818

    Open questions at the time
    • Molecular basis of the cancer phenotype distinct from glycoprotein QC not defined
    • Single cell-type context
  5. 2014 High

    Demonstrating that neither catalysis nor the catalytic domain is required for retention/degradation of misfolded NHK revealed a non-enzymatic gatekeeper function localized to a luminal stem decapeptide.

    Evidence Active-site mutagenesis, domain truncations, and ERAD reporter assays

    PMID:24627495

    Open questions at the time
    • Binding partners executing the non-enzymatic routing not identified
    • How the decapeptide selects substrates unknown
  6. 2015 High

    Showing ERManI is required for HIV-1 Env ERAD and physically interacts with Env via its catalytic domain extended MAN1B1 function to viral glycoprotein clearance.

    Evidence Ectopic expression, CRISPR knockout, co-IP, domain mapping, and catalytic-site mutagenesis

    PMID:26205822

    Open questions at the time
    • Degradation route (proteasome vs lysosome) for Env not resolved here
    • Relationship to the non-enzymatic pathway unclear
  7. 2020 High

    Resolving the functional dichotomy distinguished a luminal catalysis-dependent ERAD system from an N-terminal cytoplasmic-tail-driven catalysis- and glycan-independent system.

    Evidence Knockout HEK293T reconstitution with mutant/truncated constructs, pulse-chase, proteasome inhibition, and substrate N-glycan-site mutagenesis

    PMID:32958677

    Open questions at the time
    • Effectors recruited by the cytoplasmic tail not identified
    • Structural basis for dual mechanism not defined
  8. 2025 Medium

    Defining the Membralin-MAN1B1-VCP complex established a ubiquitin-independent, LC3-dependent ERLAD route that selectively degrades densely glycosylated viral fusion glycoproteins.

    Evidence Reciprocal co-IP with domain mapping, MAN1B1 knockout, pseudoviral infectivity, and lysosomal/LC3-LIR functional assays

    PMID:41324484

    Open questions at the time
    • Single lab, newly published
    • How dense glycosylation is sensed mechanistically not resolved
    • Stoichiometry and assembly order of the complex unknown
  9. 2025 Medium

    Linking ERK to HRD1-mediated MAN1B1 turnover explained how MAN1B1 levels are set and connected its stabilization to CD47 glycosylation and tumor immune evasion.

    Evidence Western blotting, MAN1B1-HRD1 co-IP, MAN1B1 knockout in vitro and in mice, ERK inhibition, and phagocytosis assays

    PMID:40493414

    Open questions at the time
    • Whether MAN1B1 directly glycosylates CD47 vs acts indirectly not fully resolved
    • Single lab
  10. 2025 Medium

    A luminal juxtamembrane helical charge motif was shown to partition ERManI between quality-control vesicles and the Golgi, identifying a sorting determinant for its localization.

    Evidence Charge/helical-register mutagenesis, domain grafting onto an unrelated transmembrane protein, and live-cell localization (preprint)

    PMID:bio_10.1101_2025.11.12.688035

    Open questions at the time
    • Preprint, not yet peer-reviewed
    • Identity of the trafficking machinery reading this motif unknown
    • Functional consequence of QCV vs Golgi residence for ERAD not established

Open questions

Synthesis pass · forward-looking unresolved questions
  • How the catalytic, non-enzymatic cytoplasmic-tail, ERLAD, and trafficking activities are integrated and coordinated on individual substrates remains unresolved.
  • No structural model coupling the dual mechanisms
  • Cytoplasmic-tail effectors and ERLAD assembly factors not fully mapped
  • Substrate selection rules for each pathway undefined

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060089 molecular transducer activity 2 GO:0140098 catalytic activity, acting on RNA 2 GO:0016787 hydrolase activity 1
Localization
GO:0005794 Golgi apparatus 2 GO:0031410 cytoplasmic vesicle 1
Pathway
R-HSA-392499 Metabolism of proteins 3 R-HSA-1643685 Disease 2 R-HSA-9612973 Autophagy 1
Complex memberships
Membralin-MAN1B1-VCP ERLAD complex

Evidence

Reading pass · 10 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2011 MAN1B1 encodes an alpha-1,2-mannosidase; missense mutations (p.Glu397Lys and p.Arg334Cys) at conserved residues either reduce kcat by ~1300-fold or disrupt stable protein expression in mammalian cells, establishing that catalytic activity is required for normal function. Sanger sequencing, biochemical kinetic assay, protein expression analysis in mammalian cells American journal of human genetics Medium 21763484
2011 Endogenous human ERManI (MAN1B1) predominantly resides in the Golgi complex (not the ER), where it is subjected to O-glycosylation. Appending a COPI-binding motif to partially redistribute ERManI to the ER accelerated N-glycan trimming of misfolded alpha1-antitrypsin NHK but did not accelerate NHK degradation, implicating the Golgi as the site where the glycoprotein ERAD substrate tagging signal is generated. Subcellular fractionation, immunofluorescence localization, O-glycosylation biochemical analysis, COPI-binding motif fusion redistribution experiment, metabolic pulse-chase degradation assay Molecular biology of the cell High 21697506
2013 Golgi-localized ERManI (MAN1B1) is confirmed in human cells; loss of MAN1B1 function causes altered Golgi morphology (dilatation and fragmentation) in patient-derived cells, and MAN1B1 mutations result in accumulation of hybrid-type N-glycans consistent with deficient mannosidase activity. Exome sequencing, patient fibroblast immunofluorescence (Golgi morphology), glycan analysis PLoS genetics Medium 24348268
2014 MAN1B1 plays a non-enzymatic, catalysis-independent gatekeeper role in Golgi-based protein quality control: neither the mannosidase activity nor the catalytic domain is essential for retention or degradation of misfolded ERAD substrate Null Hong Kong (NHK). Instead, a conserved vertebrate-specific non-enzymatic decapeptide sequence in the luminal stem domain controls the fate of misfolded NHK. Catalytic site mutagenesis, domain deletion/truncation constructs, ERAD substrate (NHK) degradation assays, multiple biochemical reporter assays The Journal of biological chemistry High 24627495
2015 ERManI (MAN1B1) is required for HIV-1 envelope glycoprotein degradation via ERAD: ectopic ERManI inhibits HIV-1 Env expression in a dose-dependent manner; CRISPR/Cas9 knockout of MAN1B1 disrupts TSPO-mediated Env degradation; HIV-1 Env physically interacts with ERManI; the ERManI catalytic domain is critical for the Env-ERManI interaction; inactivation of the catalytic site by mutagenesis disrupts ERManI activity. Ectopic expression, CRISPR/Cas9 knockout, co-immunoprecipitation, domain-mapping constructs, site-directed mutagenesis of catalytic site, biochemical degradation assay The Journal of biological chemistry High 26205822
2020 MAN1B1 has a functional dichotomy in ERAD: (1) a conventional catalysis-dependent system requiring an intact active site in the luminal domain to accelerate proteasomal degradation of misfolded N-glycosylated alpha1-antitrypsin variants NHK and ATZ; (2) an unconventional catalysis-independent system controlled by an evolutionarily extended N-terminal cytoplasmic tail that accelerates degradation independently of N-glycans on the misfolded substrate. Man1b1 knockout HEK293T cells, transfection of mutated/truncated Man1b1 constructs, metabolic pulse-chase labeling, proteasome inhibitor assays, N-glycan site mutagenesis on ERAD substrates Proceedings of the National Academy of Sciences of the United States of America High 32958677
2013 ERManI (MAN1B1) is a target of miR-125b via a conserved motif in its 3'UTR; knockdown of endogenous ERManI in hepatoma cells inhibits proliferation, migration, and invasion without altering global glycoprotein secretion or ER-stress status, indicating a role in hepatocellular carcinoma independent of its glycoprotein quality control function. 3'UTR reporter assay (miR-125b target validation), RNAi knockdown, cell proliferation/migration/invasion assays, global glycoprotein secretion assay, ER stress markers PloS one Medium 23940818
2025 Membralin (TMEM259) recruits MAN1B1 through its luminal loop and VCP/p97 through its cytoplasmic loop to assemble a selective ERLAD complex. This Membralin-MAN1B1-VCP axis targets viral class I fusion glycoproteins (SARS-CoV-2 spike, Ebola GP, influenza HA, HIV-1 Env) for lysosomal degradation via a ubiquitin-independent, LC3/autophagy-dependent pathway, while misfolded host glycoproteins are cleared via canonical ERAD. The complex selectively recognizes densely glycosylated substrates. Loss of MAN1B1 markedly enhances pseudoviral infectivity. Co-immunoprecipitation (Membralin-MAN1B1-VCP complex), domain-mapping (luminal loop responsible for MAN1B1 recruitment), MAN1B1 knockout, pseudoviral infectivity assay, lysosomal degradation assay, LC3-LIR functional analysis Advanced science (Weinheim, Baden-Wurttemberg, Germany) Medium 41324484
2025 ERK activation stabilizes MAN1B1 protein by regulating the interaction between MAN1B1 and the E3 ubiquitin ligase HRD1; abnormally activated ERK prevents HRD1-mediated ubiquitination/degradation of MAN1B1, resulting in elevated MAN1B1 levels that glycosylate CD47 and enhance its interaction with SIRPα, facilitating tumor immune evasion. Western blotting, co-immunoprecipitation (MAN1B1-HRD1 interaction), MAN1B1 knockout (in vitro and murine model), ERK inhibition, phagocytosis assays, patient-derived tumor-like cell clusters Cancer communications (London, England) Medium 40493414
2025 A short luminal juxtamembrane peptide with a specific helical charge distribution at the transmembrane-luminal interface determines ERManI (MAN1B1) localization to quality control vesicles (QCVs) versus Golgi. Site-directed mutagenesis disrupting the charge pattern or altering helical register shifts localization from QCVs to Golgi; grafting this peptide onto an unrelated transmembrane protein (beta-1,3-galactosyltransferase) redirected it from Golgi to QCVs. Site-directed mutagenesis of luminal juxtamembrane charged residues, alanine insertion mutagenesis (helical register shift), domain-grafting experiment, live-cell immunofluorescence localization, structural prediction bioRxivpreprint Medium bio_10.1101_2025.11.12.688035

Source papers

Stage 0 corpus · 23 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2011 Mutations in the alpha 1,2-mannosidase gene, MAN1B1, cause autosomal-recessive intellectual disability. American journal of human genetics 70 21763484
2013 MAN1B1 deficiency: an unexpected CDG-II. PLoS genetics 65 24348268
2011 Golgi localization of ERManI defines spatial separation of the mammalian glycoprotein quality control system. Molecular biology of the cell 55 21697506
2014 Diagnostic serum glycosylation profile in patients with intellectual disability as a result of MAN1B1 deficiency. Brain : a journal of neurology 45 24566669
2015 ERManI (Endoplasmic Reticulum Class I α-Mannosidase) Is Required for HIV-1 Envelope Glycoprotein Degradation via Endoplasmic Reticulum-associated Protein Degradation Pathway. The Journal of biological chemistry 34 26205822
2014 A Golgi-localized mannosidase (MAN1B1) plays a non-enzymatic gatekeeper role in protein biosynthetic quality control. The Journal of biological chemistry 29 24627495
2015 N-Glycosylation of Serum IgG and Total Glycoproteins in MAN1B1 Deficiency. Journal of proteome research 28 26401844
2023 Hepatitis B virus X protein promotes MAN1B1 expression by enhancing stability of GRP78 via TRIM25 to facilitate hepatocarcinogenesis. British journal of cancer 24 36635499
2013 ERManI is a target of miR-125b and promotes transformation phenotypes in hepatocellular carcinoma (HCC). PloS one 20 23940818
2016 Somatic overgrowth associated with homozygous mutations in both MAN1B1 and SEC23A. Cold Spring Harbor molecular case studies 19 27148587
2015 MAN1B1 Mutation Leads to a Recognizable Phenotype: A Case Report and Future Prospects. Molecular syndromology 15 26279649
2020 The cytoplasmic tail of human mannosidase Man1b1 contributes to catalysis-independent quality control of misfolded alpha1-antitrypsin. Proceedings of the National Academy of Sciences of the United States of America 13 32958677
2018 Use of Endoglycosidase H as a diagnostic tool for MAN1B1-CDG patients. Electrophoresis 11 29947113
2025 Targeting MAN1B1 potently enhances bladder cancer antitumor immunity via deglycosylation of CD47. Cancer communications (London, England) 10 40493414
2021 MAN1B1-CDG: novel patients and novel variant. Journal of pediatric endocrinology & metabolism : JPEM 8 34162022
2021 Translational balancing questioned: Unaltered glycosylation during disulfiram treatment in mannosyl-oligosaccharide alpha-1,2-mannnosidase-congenital disorders of glycosylation (MAN1B1-CDG). JIMD reports 6 34258140
2022 Identification of MAN1B1 as a Novel Marker for Bladder Cancer and Its Relationship with Immune Cell Infiltration. Journal of oncology 5 36016584
2025 A Case of Rafiq Syndrome (MAN1B1-CDG) in a Palestinian Child, With Brief Literature Review of 44 Cases. Journal of investigative medicine high impact case reports 4 39840888
2025 Membralin Assembles a MAN1B1-VCP Complex to Target Foreign Glycoproteins from the Endoplasmic Reticulum to Lysosomes for Degradation. Advanced science (Weinheim, Baden-Wurttemberg, Germany) 3 41324484
2022 Case Report: Compound Heterozygous Variants of the MAN1B1 Gene in a Russian Patient with Rafiq Syndrome. International journal of molecular sciences 3 36142510
2025 Rafiq Syndrome: Old Variant in MAN1B1 Gene and Some New Phenotypic Features. Iranian journal of child neurology 1 39896699
2025 Bi-Allelic Loss-of-Function Variant in MAN1B1 Cause Rafiq Syndrome and Developmental Delay. International journal of molecular sciences 1 40869158
2026 TMEM259/MEMBRALIN is a non-canonical ER-phagy receptor that associates with MAN1B1 and VCP to eliminate viral glycoproteins. Autophagy reports 0 41799849

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