Affinage

KRT6C

Keratin, type II cytoskeletal 6C · UniProt P48668

Round 2 corrected
Length
564 aa
Mass
60.0 kDa
Annotated
2026-04-28
84 papers in source corpus 6 papers cited in narrative 6 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

KRT6C is a type II intermediate filament keratin that heterodimerizes with keratin 9 (KRT9) via a coiled-coil interaction to maintain the cytoskeletal scaffold of palmoplantar epidermis (PMID:37467889). Dominant-negative mutations in conserved rod domain residues (e.g., p.Asn172del, p.Glu472Lys) cause dose-dependent collapse of the keratin intermediate filament network in keratinocytes, leading to focal palmoplantar keratoderma (PMID:19609311, PMID:23662636). KRT6C is also expressed in ameloblasts and incorporated into human dental enamel, where a common polymorphism (p.Ser143Asn) alters filament assembly and influences enamel structure (PMID:29357356).

Mechanistic history

Synthesis pass · year-by-year structured walk · 4 steps
  1. 2009 Medium

    Identification of KRT6C as a palmoplantar epidermis keratin whose loss-of-function-type mutations cause focal palmoplantar keratoderma established that KRT6C is non-redundant with KRT6A/KRT6B at this anatomical site.

    Evidence RT-PCR of plantar epidermis plus mutational and co-segregation analysis in three unrelated FPPK families

    PMID:19609311

    Open questions at the time
    • No in vitro filament assembly assay was performed to directly demonstrate the dominant-negative mechanism
    • The heterodimer partner of KRT6C in palmoplantar skin was not identified
    • Expression pattern across other stratified epithelia was not systematically mapped
  2. 2013 Medium

    Cell-based reconstitution of the p.Glu472Lys mutation demonstrated that the dominant-negative mechanism acts through dose-dependent collapse of the keratin filament network, confirming the pathogenic model inferred from genetics.

    Evidence Exogenous expression of mutant KRT6C in HaCaT keratinocytes with immunofluorescence and dose-response analysis

    PMID:23662636

    Open questions at the time
    • Only one mutation was tested; other FPPK-causing variants were not functionally validated
    • Effect on specific binding partners (e.g., type I keratin heterodimer partner) was not assessed
    • No in vivo mouse model was generated
  3. 2018 Medium

    Discovery that KRT6C is expressed in ameloblasts and incorporated into dental enamel broadened its biological role beyond epidermis, and showed that a common coding polymorphism (p.Ser143Asn) alters filament assembly.

    Evidence Filament assembly assay in ameloblast-like cells, RNA-seq of mouse enamel organ, immunohistochemistry of human enamel

    PMID:29357356

    Open questions at the time
    • Quantitative impact of p.Ser143Asn on enamel mechanical properties was not measured
    • Whether the ameloblast KRT6C partner is also KRT9 or a different type I keratin was not determined
  4. 2023 Medium

    Identification of KRT9 as the physiological heterodimer partner of KRT6C in palmoplantar tissue resolved the specific pairing that builds the structural intermediate filament network at this site.

    Evidence Co-immunoprecipitation coupled with mass spectrometry from native palmoplantar epidermis; in silico coiled-coil modeling

    PMID:37467889

    Open questions at the time
    • The coiled-coil interface model was not experimentally validated by mutagenesis or cross-linking
    • Stoichiometry and higher-order filament organization of the KRT6C/KRT9 heterodimer remain uncharacterized
    • No reciprocal validation (e.g., reverse Co-IP with anti-KRT6C pull-down) was reported

Open questions

Synthesis pass · forward-looking unresolved questions
  • No high-resolution structural model of the KRT6C/KRT9 heterodimer exists, and the mechanistic basis by which specific rod-domain mutations selectively destabilize palmoplantar but not other epithelial filament networks remains unresolved.
  • Crystal or cryo-EM structure of the KRT6C/KRT9 coiled-coil is unavailable
  • In vivo mouse models recapitulating human FPPK mutations in Krt6c have not been reported
  • Tissue-specific transcriptional regulation of KRT6C (beyond ER/SRC-3 in breast cancer cells) is poorly defined

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0005198 structural molecule activity 4
Localization
GO:0005856 cytoskeleton 2
Pathway
R-HSA-1266738 Developmental Biology 1
Partners

Evidence

Reading pass · 6 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2009 KRT6C is expressed in plantar epidermis and heterozygous in-frame deletion mutations (p.Asn172del; p.Ile462-Glu470del) in KRT6C cause focal palmoplantar keratoderma (FPPK) in three unrelated families, establishing KRT6C as a distinct disease gene with a dominant-negative mechanism analogous to other pachyonychia congenita keratins. RT-PCR of plantar epidermis; mutational analysis (PCR/direct sequencing) of KRT6C in affected families; co-segregation analysis The Journal of investigative dermatology Medium 19609311
2013 Expression of the disease-associated KRT6C missense mutation p.Glu472Lys (c.1414G>A, located in the helix termination motif of the 2B domain) in human HaCaT keratinocytes causes dose-dependent collapse of the keratin intermediate filament network, demonstrating a dominant-negative effect on keratin filament assembly. The mutated glutamate residue is conserved across type II, III, and IV intermediate filament proteins. Exogenous expression of mutant KRT6C in HaCaT cells; immunofluorescence microscopy of keratin filament network; dose-response analysis The Journal of dermatology Medium 23662636
2018 A common polymorphism in KRT6C (rs151117600, p.Ser143Asn) alters the assembly of keratin 6 filaments in ameloblast-like cells, and KRT6C protein is incorporated into human dental enamel by ameloblasts, identifying a role for KRT6C in tooth enamel formation. Filament assembly assay in ameloblast-like cells (transfection + immunofluorescence); RNA-seq of mouse enamel organ; immunohistochemistry of human enamel; structural analysis of PC patient teeth PLoS genetics Medium 29357356
2023 KRT6C is the heterodimer partner of keratin 9 (KRT9) in palmoplantar epidermis. Co-immunoprecipitation coupled with mass spectrometry from palmoplantar tissue identified KRT6C as co-purifying with KRT9; in silico modeling predicts a coiled-coil interface at their 2B domains. Proteomics shows the KRT6C/KRT9 complex participates in a densely connected network regulating cytoskeleton organization and keratinization. Co-immunoprecipitation from palmoplantar epidermis coupled with mass spectrometry (Co-IP/MS); in silico structural modeling of coiled-coil heterodimer; proteomics network analysis Journal of proteomics Medium 37467889
2015 KRT6C mRNA is downregulated in MCF-7 breast cancer cells by the active tamoxifen metabolite endoxifen (4OHNDtam) and also by estrogen deprivation and knockdown of the steroid receptor coactivator SRC-3/AIB1, indicating that KRT6C expression is regulated in an estrogen receptor-dependent manner through SRC-3/AIB1. Global gene expression profiling (microarray) in MCF-7 cells treated with tamoxifen metabolites; E2 deprivation; siRNA knockdown of SRC-3/AIB1; qRT-PCR validation PloS one Low 25867603
2026 KRT6C is upregulated upon CRISPR/Cas9-mediated knockout of the transcription factor PA2G4 (proliferation-associated protein 2G4) in primary human keratinocytes, placing KRT6C downstream of PA2G4 in a pathway where PA2G4 suppresses keratinocyte differentiation; KRT6C induction accompanies activation of differentiation pathways and suppression of proliferation. CRISPR/Cas9 knockout of PA2G4 in primary human keratinocytes; RNA-seq; western blot; pharmacological inhibition with WS6 The British journal of dermatology Low 42008715

Source papers

Stage 0 corpus · 84 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2005 Towards a proteome-scale map of the human protein-protein interaction network. Nature 2090 16189514
2002 Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America 1479 12477932
2015 A human interactome in three quantitative dimensions organized by stoichiometries and abundances. Cell 1015 26496610
2014 A proteome-scale map of the human interactome network. Cell 977 25416956
2020 A reference map of the human binary protein interactome. Nature 849 32296183
2018 VIRMA mediates preferential m6A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. Cell discovery 829 29507755
2011 Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Briefings in bioinformatics 656 21873635
2006 New consensus nomenclature for mammalian keratins. The Journal of cell biology 520 16831889
2011 Mapping the NPHP-JBTS-MKS protein network reveals ciliopathy disease genes and pathways. Cell 507 21565611
2015 Widespread macromolecular interaction perturbations in human genetic disorders. Cell 454 25910212
2004 The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Genome research 438 15489334
2011 Defining human ERAD networks through an integrative mapping strategy. Nature cell biology 427 22119785
2016 Widespread Expansion of Protein Interaction Capabilities by Alternative Splicing. Cell 423 26871637
2005 Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Genome research 409 16344560
2011 Image-based genome-wide siRNA screen identifies selective autophagy factors. Nature 405 22020285
2010 Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics. Cell 318 21145461
1983 The cDNA sequence of a Type II cytoskeletal keratin reveals constant and variable structural domains among keratins. Cell 300 6191871
2007 Use of immunohistochemical markers can refine prognosis in triple negative breast cancer. BMC cancer 297 17650314
1994 Making a connection: direct binding between keratin intermediate filaments and desmosomal proteins. The Journal of cell biology 255 7525601
2009 Prediction of local recurrence, distant metastases, and death after breast-conserving therapy in early-stage invasive breast cancer using a five-biomarker panel. Journal of clinical oncology : official journal of the American Society of Clinical Oncology 248 19720911
2004 An investigation into the human serum "interactome". Electrophoresis 247 15174051
2009 Proteomic analysis of human parotid gland exosomes by multidimensional protein identification technology (MudPIT). Journal of proteome research 237 19199708
1995 Mutation of a type II keratin gene (K6a) in pachyonychia congenita. Nature genetics 196 7545493
2020 A High-Density Human Mitochondrial Proximity Interaction Network. Cell metabolism 148 32877691
2022 PHGDH Inhibits Ferroptosis and Promotes Malignant Progression by Upregulating SLC7A11 in Bladder Cancer. International journal of biological sciences 143 36147463
2013 In-depth proteomic analyses of exosomes isolated from expressed prostatic secretions in urine. Proteomics 138 23533145
2009 Charting the molecular network of the drug target Bcr-Abl. Proceedings of the National Academy of Sciences of the United States of America 137 19380743
2016 SPATA2 Links CYLD to LUBAC, Activates CYLD, and Controls LUBAC Signaling. Molecular cell 134 27591049
2014 The central role of EED in the orchestration of polycomb group complexes. Nature communications 131 24457600
2011 Proteomic characterization of the human sperm nucleus. Proteomics 116 21630459
2017 Exhaled breath condensate biomarkers for the early diagnosis of lung cancer using proteomics. American journal of physiology. Lung cellular and molecular physiology 56 28619761
2017 Keratin 5 overexpression is associated with serous ovarian cancer recurrence and chemotherapy resistance. Oncotarget 52 28147318
2014 The molecular genetic analysis of the expanding pachyonychia congenita case collection. The British journal of dermatology 48 24611874
2020 Assessing potential mechanisms of arsenic-induced skin lesions and cancers: Human and in vitro evidence. Environmental pollution (Barking, Essex : 1987) 46 31995775
2019 Pathophysiology of pachyonychia congenita-associated palmoplantar keratoderma: new insights into skin epithelial homeostasis and avenues for treatment. The British journal of dermatology 43 31021398
2009 Keratin K6c mutations cause focal palmoplantar keratoderma. The Journal of investigative dermatology 43 19609311
2020 Identification of gene modules and hub genes in colon adenocarcinoma associated with pathological stage based on WGCNA analysis. Cancer genetics 37 32036224
2020 Revisiting pachyonychia congenita: a case-cohort study of 815 patients. The British journal of dermatology 36 31823354
2010 A transcriptional network signature characterizes lung cancer subtypes. Cancer 31 20839314
2021 Identification of potential salivary biomarker panels for oral squamous cell carcinoma. Scientific reports 26 33564003
2018 Pachyonychia congenita: a case report of a successful treatment with rosuvastatin in a patient with a KRT6A mutation. The British journal of dermatology 25 30307612
2021 circ-Keratin 6c Promotes Malignant Progression and Immune Evasion of Colorectal Cancer through microRNA-485-3p/Programmed Cell Death Receptor Ligand 1 Axis. The Journal of pharmacology and experimental therapeutics 23 33771844
2018 Genetic variants in pachyonychia congenita-associated keratins increase susceptibility to tooth decay. PLoS genetics 20 29357356
2016 Proteomic profiling reveals candidate markers for arsenic-induced skin keratosis. Environmental pollution (Barking, Essex : 1987) 19 27552035
2019 Enrichment of genes associated with squamous differentiation in cancer initiating cells isolated from urothelial cells transformed by the environmental toxicant arsenite. Toxicology and applied pharmacology 17 31047981
2017 Comprehensive Transcriptome Profiling of Balding and Non-Balding Scalps in Trichorhinophalangeal Syndrome Type I Patient. Annals of dermatology 15 28966516
2016 Pachyonychia Congenita: A Spectrum of KRT6a Mutations in Australian Patients. Pediatric dermatology 15 27041546
2013 Comprehensive transcriptome profiling of squamous cell carcinoma of horn in Bos indicus. Veterinary and comparative oncology 13 24314272
2017 Proteomic profiling of Pachyonychia congenita plantar callus. Journal of proteomics 12 28648685
2023 Pachyonychia Congenita: Clinical Features and Future Treatments. The Keio journal of medicine 11 37766547
2010 Mutations in a keratin 6 isomer (K6c) cause a type of focal palmoplantar keratoderma. The Journal of investigative dermatology 11 20081885
2021 Assessing the potential value and mechanism of Ginkgo biloba L. On coal-fired arsenic-induced skin damage: In vitro and human evidence. Human & experimental toxicology 10 34085585
2024 Evaluation of Cd-induced cytotoxicity in primary human keratinocytes. Human & experimental toxicology 9 38174414
2011 Diffuse and focal palmoplantar keratoderma can be caused by a keratin 6c mutation. The British journal of dermatology 9 21801157
2021 Identification of clinically useful predictive genetic variants in pachyonychia congenita. Clinical and experimental dermatology 8 33486795
2024 Assessment of Concentration KRT6 Proteins in Tumor and Matching Surgical Margin from Patients with Head and Neck Squamous Cell Carcinoma. International journal of molecular sciences 7 39000463
2019 Functional study of 14-3-3 protein epsilon (YWHAE) in keratinocytes: microarray integrating bioinformatics approaches. Journal of biomolecular structure & dynamics 7 31244373
2019 Symptomatic mucosal involvement in pachyonychia congenita: challenges in infants and young children. The British journal of dermatology 6 31777952
2015 Pachyonychia Congenita (K16) with Unusual Features and Good Response to Acitretin. Case reports in dermatology 6 26464567
2023 Phenotype and genotype features of Vietnamese children with pachyonychia congenita. Pediatrics and neonatology 5 36658016
2018 Genomic Analysis Using Regularized Regression in High-Grade Serous Ovarian Cancer. Cancer informatics 5 29434467
2017 First Report of Pachyonychia Congenita Type PC-K6a in the Romanian Population. Maedica 5 29090033
2013 Collapse of the keratin filament network through the expression of mutant keratin 6c observed in a case of focal plantar keratoderma. The Journal of dermatology 5 23662636
2012 Two novel de novo mutations of KRT6A and KRT16 genes in two Chinese pachyonychia congenita pedigrees with fissured tongue or diffuse plantar keratoderma. European journal of dermatology : EJD 5 22668561
2023 Proteomic profiling reveals KRT6C as a probable hereterodimer partner for KRT9: New insights into re-classifying epidermolytic palmoplantar keratoderma (EPPK) and a milder form of pachyonychia congenita (PC-K6c) as a group of genetic cutaneous disorders. Journal of proteomics 4 37467889
2021 A KRT6A and a Novel KRT16 Gene Mutations in Chinese Patients with Pachyonychia Congenita. International journal of general medicine 4 33762842
2021 A KRT6A mutation p.Ile462Asn in a Chinese family with pachyonychia congenita, and identification of maternal mosaicism: a case report. BMC medical genomics 4 34724947
2020 Molecular epidemiology of pachyonychia congenita in the Israeli population. Clinical and experimental dermatology 4 33190296
2017 Keratin 17 Mutations in Four Families from India with Pachyonychia Congenita. Indian journal of dermatology 4 28794556
2024 Landscape of epithelial cell subpopulations in the human esophageal squamous cell carcinoma microenvironment. Heliyon 3 39391485
2019 A KRT16 mutation in the first Chinese pedigree with Pachyonychia congenita and review of the literatures. Journal of cosmetic dermatology 3 30859684
2015 The active tamoxifen metabolite endoxifen (4OHNDtam) strongly down-regulates cytokeratin 6 (CK6) in MCF-7 breast cancer cells. PloS one 3 25867603
2025 KRT9 is required for GBP5 suppression of human respiratory syncytial virus. Journal of virology 2 39835811
2024 Exploring KRAS-mutant pancreatic ductal adenocarcinoma: a model validation study. Frontiers in immunology 2 38268915
2024 Six-Gene Signature for Differential Diagnosis and Therapeutic Decisions in Non-Small-Cell Lung Cancer-A Validation Study. International journal of molecular sciences 2 38612418
2024 Mutation p.Arg127Pro in the 1A Domain of KRT16 Causes Pachyonychia Congenita in Chinese Patient: A Case Report of PC Associated with Acral Melanoma. Clinical, cosmetic and investigational dermatology 1 38770089
2023 Pachyonychia Congenita Project: Advancing Research and Drug Development through Collaboration. The Keio journal of medicine 1 38072449
2020 Generalized bullae in a young girl with KRT6A-related pachyonychia congenita. Pediatric dermatology 1 32662074
2014 First case of pachyonychia congenita in the Czech Republic. Dermatologic therapy 1 25174302
2026 Proliferation-associated protein 2G4 promotes keratinocyte proliferation and survival in psoriasis. The British journal of dermatology 0 42008715
2025 Whole exome sequencing identified mutations of forkhead box I 1 (FOXI1), keratin 6 C (KRT6C) and gap junction protein delta 2 (GJD2) in a low-grade oncocytic tumor of the kidney: a case report. Diagnostic pathology 0 39980061
2025 Towards a transcriptomic biomarker for the classification of melanocytic neoplasms. PLoS genetics 0 41042798
2024 A novel heterozygous frameshift mutation in the KRT6A gene responsible for an uncommon phenotype of pachyonychia congenita: One case report and review of literature. Heliyon 0 38468954
2018 Novel Splice-Site Mutation of KRT1 Underlies Diffuse Palmoplantar Keratoderma in a Large Chinese Pedigree. Genetic testing and molecular biomarkers 0 30452289