Affinage

KNTC1

Kinetochore-associated protein 1 · UniProt P50748

Length
2209 aa
Mass
250.7 kDa
Annotated
2026-06-10
100 papers in source corpus 2 papers cited in narrative 2 extracted findings
Cross-family judge vs UniProt: UniProt preferred faithfulness: 2/2 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

KNTC1 is required for cancer cell survival and proliferation, with loss-of-function studies in esophageal squamous cell carcinoma showing that its knockdown suppresses viability and induces apoptosis (PMID:30628654). In non-small-cell lung cancer, KNTC1 depletion inhibits proliferation, migration, invasion, and xenograft tumor formation, and positions KNTC1 upstream of the proteasome subunit PSMB8 in driving tumor progression (PMID:35933405). Pathway-level correlation links KNTC1 expression to mitotic spindle activity (PMID:30628654), but the direct molecular mechanism of KNTC1 function has not been characterized in the available corpus; all current evidence is phenotypic knockdown data without rescue, epistasis, or direct biochemical validation.

Mechanistic history

Synthesis pass · year-by-year structured walk · 2 steps
  1. 2019 Low

    Established that KNTC1 is functionally required for cancer cell survival rather than merely a correlate, by showing its depletion kills esophageal carcinoma cells.

    Evidence Lentiviral shRNA knockdown with MTT viability and Annexin V apoptosis assays in ESCC cell lines, plus GSEA of expression datasets

    PMID:30628654

    Open questions at the time
    • No rescue experiment to confirm on-target effect
    • Mitotic spindle association is correlative GSEA only, not a direct mechanistic link
    • No identification of KNTC1 molecular partners or substrates
  2. 2022 Low

    Extended the requirement for KNTC1 to lung cancer proliferation, invasion, and in vivo tumor growth, and attempted to place it in a pathway upstream of PSMB8.

    Evidence Lentiviral shRNA knockdown with proliferation, wound-healing, transwell invasion, flow cytometry, and nude-mouse xenograft assays in NSCLC, with downstream PSMB8 expression analysis

    PMID:35933405

    Open questions at the time
    • PSMB8 relationship is correlative, not validated by rescue or direct interaction
    • No biochemical demonstration of how KNTC1 regulates PSMB8
    • Mechanism connecting KNTC1 to migration/invasion phenotypes unresolved

Open questions

Synthesis pass · forward-looking unresolved questions
  • The direct molecular function of KNTC1 — its biochemical activity, binding partners, and the mechanistic basis of its purported kinetochore/spindle role — remains undefined in the available corpus.
  • No biochemical or structural characterization of KNTC1
  • No validated interaction partners identified
  • Causal mechanism linking KNTC1 to the proteasome and to mitotic phenotypes not established

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
No controlled-vocabulary terms were assigned to this entry.

Evidence

Reading pass · 2 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2019 shRNA-mediated knockdown of KNTC1 in human esophageal squamous cell carcinoma (ESCC) cell lines suppressed cell viability and induced apoptosis, demonstrating a required role for KNTC1 in ESCC cell survival. Gene set enrichment analysis of ESCC datasets indicated that KNTC1 overexpression correlates with increased mitotic spindle and hypoxia pathway activity. Lentivirus-mediated shRNA knockdown, MTT assay, Annexin V flow cytometry, high-content screening, GSEA of online datasets International journal of oncology Low 30628654
2022 shRNA-mediated knockdown of KNTC1 in non-small-cell lung cancer (NSCLC) cell lines inhibited cell proliferation, migration, invasion, and tumor formation in xenograft models. Downstream mechanistic analysis indicated that KNTC1 depletion was positively associated with PSMB8 expression levels, suggesting KNTC1 acts upstream of PSMB8 in NSCLC progression. Lentivirus-delivered shRNA knockdown, MTT assay, wound-healing assay, transwell invasion assay, flow cytometry, nude mouse xenograft model, downstream gene expression analysis Cell death & disease Low 35933405

Source papers

Stage 0 corpus · 100 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2001 Nrl is required for rod photoreceptor development. Nature genetics 770 11694879
2010 Phagocytosis of retinal rod and cone photoreceptors. Physiology (Bethesda, Md.) 346 20134024
1986 The rod pathway in the rabbit retina: a depolarizing bipolar and amacrine cell. The Journal of neuroscience : the official journal of the Society for Neuroscience 338 3950701
1971 The renewal of rod and cone outer segments in the rhesus monkey. The Journal of cell biology 286 19866760
2001 Rod vision: pathways and processing in the mammalian retina. Progress in retinal and eye research 277 11286897
1997 Mutations in the cone-rod homeobox gene are associated with the cone-rod dystrophy photoreceptor degeneration. Neuron 243 9427255
2008 Morphogenesis of rod-shaped sacculi. FEMS microbiology reviews 235 18291013
2006 RGS expression rate-limits recovery of rod photoresponses. Neuron 208 16908407
1995 Rod photoreceptor neurite sprouting in retinitis pigmentosa. The Journal of neuroscience : the official journal of the Society for Neuroscience 197 7643192
1999 Rod pathways: the importance of seeing nothing. Trends in neurosciences 170 10529817
1990 Rod pathways in mammalian retinae. Trends in neurosciences 169 1691871
1991 The rod bipolar cell of the mammalian retina. Visual neuroscience 164 1718403
2004 Convergence and segregation of the multiple rod pathways in mammalian retina. The Journal of neuroscience : the official journal of the Society for Neuroscience 152 15590935
2015 Restoration of Vision with Ectopic Expression of Human Rod Opsin. Current biology : CB 148 26234216
2012 Vitamin A metabolism in rod and cone visual cycles. Annual review of nutrition 147 22809103
2005 Spare the rod and spoil the eye. The British journal of ophthalmology 125 15923516
2014 Rod microglia: a morphological definition. PloS one 118 24830807
1997 Rod inputs to macaque ganglion cells. Vision research 114 9415362
2014 Molecular basis for SMC rod formation and its dissolution upon DNA binding. Molecular cell 113 25557547
2009 Pias3-dependent SUMOylation directs rod photoreceptor development. Neuron 106 19186166
2016 NRL-Regulated Transcriptome Dynamics of Developing Rod Photoreceptors. Cell reports 104 27880916
1997 The effect of peripherin/rds haploinsufficiency on rod and cone photoreceptors. The Journal of neuroscience : the official journal of the Society for Neuroscience 103 9334387
2009 The paraflagellar rod of kinetoplastid parasites: from structure to components and function. International journal for parasitology 101 19879876
2010 EYS is a major gene for rod-cone dystrophies in France. Human mutation 94 20333770
2000 Soluble factors and the development of rod photoreceptors. Cellular and molecular life sciences : CMLS 94 10766019
2008 Rod photoreceptor differentiation in fetal and infant human retina. Experimental eye research 93 18778702
2005 The role of cholesterol in rod outer segment membranes. Progress in lipid research 93 15924998
2010 Age-related deterioration of rod vision in mice. The Journal of neuroscience : the official journal of the Society for Neuroscience 88 20720130
2001 A visual pigment expressed in both rod and cone photoreceptors. Neuron 84 11709156
2009 Evolution of vertebrate rod and cone phototransduction genes. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 82 19720650
1996 Solubilization of membrane-bound rod phosphodiesterase by the rod phosphodiesterase recombinant delta subunit. The Journal of biological chemistry 82 8798640
2009 Division site selection in rod-shaped bacteria. Current opinion in microbiology 77 19884039
2009 Essential and synergistic roles of RP1 and RP1L1 in rod photoreceptor axoneme and retinitis pigmentosa. The Journal of neuroscience : the official journal of the Society for Neuroscience 74 19657028
1975 Interactions of rod and cone signals in the mudpuppy retina. The Journal of physiology 73 1206574
2010 The orphan nuclear hormone receptor ERRbeta controls rod photoreceptor survival. Proceedings of the National Academy of Sciences of the United States of America 71 20534447
1991 The rod circuit in the rabbit retina. Visual neuroscience 71 1931798
1996 PKN associates and phosphorylates the head-rod domain of neurofilament protein. The Journal of biological chemistry 70 8621664
2009 Cone-rod dystrophy and a frameshift mutation in the PROM1 gene. Molecular vision 65 19718270
2002 Visualization of rod photoreceptor development using GFP-transgenic zebrafish. Genesis (New York, N.Y. : 2000) 65 12395387
2014 OTX2 loss causes rod differentiation defect in CRX-associated congenital blindness. The Journal of clinical investigation 64 24382353
2017 Eukaryotic Rad50 functions as a rod-shaped dimer. Nature structural & molecular biology 63 28134932
2015 Autophagy supports survival and phototransduction protein levels in rod photoreceptors. Cell death and differentiation 63 25571975
2001 Rod-cone interactions: developmental and clinical significance. Progress in retinal and eye research 60 11390256
1998 Sequential genesis and determination of cone and rod photoreceptors in Xenopus. Journal of neurobiology 60 9622007
2015 Electroretinographic assessment of rod- and cone-mediated bipolar cell pathways using flicker stimuli in mice. Scientific reports 59 26029863
2011 The rod photoreceptor lineage of teleost fish. Progress in retinal and eye research 58 21742053
2019 Diverse Chromatic Acclimation Processes Regulating Phycoerythrocyanin and Rod-Shaped Phycobilisome in Cyanobacteria. Molecular plant 57 30818037
1986 Purification and properties of guanylate kinase from bovine retinas and rod outer segments. European journal of biochemistry 54 3024975
2007 Mechanisms underlying intranuclear rod formation. Brain : a journal of neurology 52 17928315
2019 Topography of Neurons in the Rod Pathway of Human Retina. Investigative ophthalmology & visual science 50 31260035
2018 Rod and cone interactions in the retina. F1000Research 49 29899971
2005 Studying rod photoreceptor development in zebrafish. Physiology & behavior 48 16199068
2002 Correlation between rod photoreceptor numbers and levels of ocular pigmentation. Investigative ophthalmology & visual science 46 11923266
2012 BiP prevents rod opsin aggregation. Molecular biology of the cell 45 22855534
2012 CRX variants in cone-rod dystrophy and mutation overview. Biochemical and biophysical research communications 44 22960069
2010 Rod phosphodiesterase-6 PDE6A and PDE6B subunits are enzymatically equivalent. The Journal of biological chemistry 43 20940301
1999 Unravelling the kinetoplastid paraflagellar rod. Trends in cell biology 43 10481179
2012 Modulation of mouse rod response decay by rhodopsin kinase and recoverin. The Journal of neuroscience : the official journal of the Society for Neuroscience 42 23136436
2010 An ADAM9 mutation in canine cone-rod dystrophy 3 establishes homology with human cone-rod dystrophy 9. Molecular vision 42 20806078
2009 RGS9 concentration matters in rod phototransduction. Biophysical journal 40 19751658
2020 Mature Retina Compensates Functionally for Partial Loss of Rod Photoreceptors. Cell reports 39 32521255
2018 Casz1 controls higher-order nuclear organization in rod photoreceptors. Proceedings of the National Academy of Sciences of the United States of America 38 30072429
2018 Range, routing and kinetics of rod signaling in primate retina. eLife 38 30299254
2021 Transmission at rod and cone ribbon synapses in the retina. Pflugers Archiv : European journal of physiology 37 33779813
2014 Advances in repairing the degenerate retina by rod photoreceptor transplantation. Biotechnology advances 36 24412415
2009 Unilateral retinitis pigmentosa and cone-rod dystrophy. Clinical ophthalmology (Auckland, N.Z.) 36 19668577
2008 Light-dependent compartmentalization of transducin in rod photoreceptors. Molecular neurobiology 35 18425604
2007 Transport of truncated rhodopsin and its effects on rod function and degeneration. Investigative ophthalmology & visual science 35 17525223
2015 The Determination of Rod and Cone Photoreceptor Fate. Annual review of vision science 33 28532380
2011 Photoreceptor cell death, proliferation and formation of hybrid rod/S-cone photoreceptors in the degenerating STK38L mutant retina. PloS one 31 21980341
2004 Transmission of scotopic signals from the rod to rod-bipolar cell in the mammalian retina. Vision research 29 15535994
2021 Molecular bases of rod and cone differences. Progress in retinal and eye research 28 34974196
2017 The evolution of rod photoreceptors. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 28 28193819
2013 Rod photoreceptors express GPR55 in the adult vervet monkey retina. PloS one 28 24244730
2005 RPE65 surface epitopes, protein interactions, and expression in rod- and cone-dominant species. Molecular vision 28 16379027
2019 Extraocular, rod-like photoreceptors in a flatworm express xenopsin photopigment. eLife 27 31635694
2016 Connexin 36 and rod bipolar cell independent rod pathways drive retinal ganglion cells and optokinetic reflexes. Vision research 27 26718442
2002 Dynamic behavior of rod photoreceptor disks. Biophysical journal 27 12202366
2018 Transcripts within rod photoreceptors of the Zebrafish retina. BMC genomics 26 29422031
2018 Primary Rod and Cone Degeneration Is Prevented by HDAC Inhibition. Advances in experimental medicine and biology 26 29721965
2015 Circadian and light-driven regulation of rod dark adaptation. Scientific reports 26 26626567
1985 Lead and mercury toxicity and the rod light response. Investigative ophthalmology & visual science 25 2991162
2019 shRNA‑mediated knockdown of KNTC1 suppresses cell viability and induces apoptosis in esophageal squamous cell carcinoma. International journal of oncology 24 30628654
2019 Manipulating rod-shaped bacteria with optical tweezers. Scientific reports 24 31836805
2016 Rod-cone crossover connectome of mammalian bipolar cells. The Journal of comparative neurology 23 27447117
2013 A physiological role for the supramolecular organization of rhodopsin and transducin in rod photoreceptors. FEBS letters 23 23684654
2003 Why study rod cell death in retinal degenerations and how? Documenta ophthalmologica. Advances in ophthalmology 23 12675482
2013 Rod and cone pathway signaling and interaction under mesopic illumination. Journal of vision 21 23325348
2009 Prox1 expression in rod precursors and Müller cells. Experimental eye research 21 19895810
1995 Chromosome 19q cone-rod retinal dystrophy. Ocular phenotype. Archives of ophthalmology (Chicago, Ill. : 1960) 21 7864751
2022 Genetic elimination of rod/cone coupling reveals the contribution of the secondary rod pathway to the retinal output. Science advances 20 35363529
2018 Role of recoverin in rod photoreceptor light adaptation. The Journal of physiology 20 29435986
2018 Assembly Order of Flagellar Rod Subunits in Bacillus subtilis. Journal of bacteriology 20 30201778
2017 NMNAT1 variants cause cone and cone-rod dystrophy. European journal of human genetics : EJHG 20 29184169
2022 shRNA‑mediated knockdown of KNTC1 inhibits non-small-cell lung cancer through regulating PSMB8. Cell death & disease 19 35933405
2018 Maintaining Cone Function in Rod-Cone Dystrophies. Advances in experimental medicine and biology 18 29721982
2007 Nr2e3 and Nrl can reprogram retinal precursors to the rod fate in Xenopus retina. Developmental dynamics : an official publication of the American Association of Anatomists 18 17377979
1995 Intersegmental fusion in vertebrate rod photoreceptors. Rod cell structure revisited. Investigative ophthalmology & visual science 18 7635665
1989 Rod cell-specific antigens in retinoblastoma. Archives of ophthalmology (Chicago, Ill. : 1960) 18 2473730
1985 Signal mechanisms of phototransduction in retinal rod. CRC critical reviews in biochemistry 18 2579769

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