Affinage

KCNH4

Voltage-gated delayed rectifier potassium channel KCNH4 · UniProt Q9UQ05

Length
1017 aa
Mass
111.7 kDa
Annotated
2026-06-10
12 papers in source corpus 6 papers cited in narrative 6 extracted findings
Cross-family judge vs UniProt: tie faithfulness: 3/3 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

KCNH4 (Kv12.3) encodes a low-threshold voltage-gated potassium channel of the Elk subfamily within the EAG superfamily (PMID:12890647, PMID:23712551). It assembles into functional channels and forms selective heteromultimers with other Elk family members (KCNH8 and KCNH3) but cannot co-assemble with Eag, Erg, or Kv family subunits, defining a restricted subfamily-specific oligomerization rule (PMID:12890647). Channel gating is modulated by extracellular pH: external acidification depolarizes the conductance-voltage relationship and suppresses low-threshold activation, an effect mediated by EAG-specific acidic residues in the voltage sensor that also confer divalent cation (Zn2+/Mg2+) sensitivity (PMID:23712551). Beyond its biophysical characterization, the corpus links KCNH4 expression to neuronal contexts but does not establish a mechanism downstream of the channel. No structural model, no native heteromeric complex composition in tissue, and no disease-causing mutation have been characterized in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 5 steps
  1. 2003 Medium

    Established the subunit assembly rules for KCNH4, answering whether it forms homomeric channels or combines with other channel families.

    Evidence Coexpression of dominant-negative KCNH4 with other channel subunits in Xenopus oocytes with electrophysiological readout

    PMID:12890647

    Open questions at the time
    • Native heteromeric stoichiometry in neurons not determined
    • Whether endogenous KCNH4/KCNH8 heteromers occur in tissue untested
    • No structural basis for subfamily-restricted assembly
  2. 2013 Medium

    Defined the molecular determinant of proton modulation, showing how extracellular pH tunes KCNH4 voltage-sensor activation.

    Evidence Conductance-voltage recordings plus site-directed mutagenesis of voltage-sensor acidic residues across EAG superfamily members including Kv12.3

    PMID:23712551

    Open questions at the time
    • Physiological pH range over which modulation is relevant in vivo not established
    • Functional consequence of pH gating in native neurons untested
    • No structural model of the protonated voltage sensor
  3. 2021 Low

    Placed KCNH4 protein in pH-sensitive central chemoreceptor neurons, connecting its proton sensitivity to a candidate physiological setting.

    Evidence Immunofluorescence, Western blot, and qPCR in Phox2b-expressing NTS neurons of mouse brainstem

    PMID:33903883

    Open questions at the time
    • Localization only; no functional role for KCNH4 in chemoreception demonstrated
    • No loss-of-function or knockout phenotype
    • Co-localization with Phox2b does not establish channel contribution to neuronal firing
  4. 2015 Low

    Linked KCNH4 transcript abundance to tau levels, raising the channel as a downstream node of tau-associated changes in neuronal excitability and proliferation.

    Evidence Tau plasmid transfection in mouse N2A and human SK-N-SH neuroblastoma cells with qRT-PCR, patch-clamp, and proliferation assays

    PMID:25590133 PMID:26576773

    Open questions at the time
    • mRNA-level effect only; no direct link to KCNH4 protein or to the channel as the proliferation driver
    • KCNH4 is one of several Kv channels affected, so specificity is unresolved
    • Mechanism connecting tau to KCNH4 transcription unknown
  5. 2020 Low

    Extended transcriptional regulation of KCNH4 to a second perturbation, CLN1/PPT1 overexpression, again reducing Kv12 channel function.

    Evidence RNA-seq and patch-clamp with pharmacological dissection (4-AP, NS-1643) in CLN1-overexpressing SH-SY5Y cells

    PMID:33390903

    Open questions at the time
    • Kv12 reduction inferred pharmacologically; KCNH4 not directly manipulated
    • Direct versus indirect transcriptional effect not distinguished
    • No demonstration that KCNH4 loss accounts for the cellular phenotype

Open questions

Synthesis pass · forward-looking unresolved questions
  • The native channel composition, in vivo physiological function, and any disease relevance of KCNH4 remain unresolved.
  • No structural model of the channel or its voltage sensor
  • No loss-of-function phenotype establishing a neuronal or systemic role
  • No characterized causative disease mutation

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0005215 transporter activity 2 GO:0140299 molecular sensor activity 1
Localization
GO:0005886 plasma membrane 1
Pathway
R-HSA-112316 Neuronal System 1
Partners

Evidence

Reading pass · 6 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2003 KCNH4 (Kv12.3/Elk subfamily) subunits can form heteromultimers with other Elk family members (KCNH8, KCNH3); dominant-negative KCNH4 subunits suppress KCNH8 currents when coexpressed in Xenopus oocytes, but KCNH4 subunits cannot form heteromultimers with Eag, Erg, or Kv family K+ channels. Coexpression of dominant-negative subunits in Xenopus oocytes with electrophysiological readout American journal of physiology. Cell physiology Medium 12890647
2013 Kv12.3 (KCNH4) voltage-gated K+ channel activation is inhibited by external acidification (protons), which depolarizes its conductance-voltage curve and reduces low-threshold activation. This pH sensitivity is mediated through EAG-specific acidic residues in the voltage sensor, the same residues implicated in divalent cation (Zn2+/Mg2+) block. Electrophysiological recording (conductance-voltage curves) combined with site-directed mutagenesis of voltage sensor acidic residues across EAG superfamily members including Kv12.3 The Journal of general physiology Medium 23712551
2021 Kv12.3 (KCNH4) protein is expressed in Phox2b-expressing neurons in the nucleus tractus solitarii (NTS) of mice, co-localizing with the Phox2b marker, providing molecular evidence that Kv12.3 is present in central respiratory chemoreceptor neurons that are known to be pH-sensitive. Immunofluorescence staining, Western blot, and qPCR in mouse NTS tissue Sheng li xue bao : [Acta physiologica Sinica] Low 33903883
2015 Overexpression of tau in mouse neuroblastoma N2A cells downregulates KCNH4 mRNA levels and reduces macroscopic Kv currents (by ~36.5% at +60 mV), and this reduction in Kv channel activity is associated with increased cell proliferation. Transient transfection of tau plasmids into N2A cells; qRT-PCR for mRNA levels; patch-clamp electrophysiology; proliferation assay PloS one Low 25590133
2015 Transfection of tau plasmids into human neuroblastoma SK-N-SH cells causes significant reduction in KCNH4 mRNA levels, with corresponding decline in Kv currents measured by patch-clamp, and increased cell proliferation. Tau plasmid transfection into SK-N-SH cells; qRT-PCR; patch-clamp electrophysiology; proliferation assay Journal of molecular neuroscience : MN Low 26576773
2020 CLN1/PPT1 overexpression in differentiated SH-SY5Y neuronal-like cells leads to downregulation of KCNH4 transcripts and reduced functional Kv12 channels at the plasma membrane, as evidenced by pharmacological dissection using 4-AP and NS-1643 (drugs with opposing effects on Kv11 and Kv12 subfamilies) in patch-clamp recordings. Transcriptomics (RNA-seq), patch-clamp electrophysiology with pharmacological dissection (4-AP and NS-1643), in CLN1-overexpressing SH-SY5Y cells Frontiers in cellular neuroscience Low 33390903

Source papers

Stage 0 corpus · 12 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2003 Distribution and functional properties of human KCNH8 (Elk1) potassium channels. American journal of physiology. Cell physiology 52 12890647
2017 DNA and RNA-sequence based GWAS highlights membrane-transport genes as key modulators of milk lactose content. BMC genomics 44 29246110
2012 First WNK4-hypokalemia animal model identified by genome-wide association in Burmese cats. PloS one 44 23285264
2013 External pH modulates EAG superfamily K+ channels through EAG-specific acidic residues in the voltage sensor. The Journal of general physiology 30 23712551
2019 Somatic Mutations Profile of a Young Patient With Metastatic Urothelial Carcinoma Reveals Mutations in Genes Involved in Ion Channels. Frontiers in oncology 14 31192134
2015 Overexpression of tau downregulated the mRNA levels of Kv channels and improved proliferation in N2A cells. PloS one 13 25590133
2020 Electrophysiological Profile Remodeling via Selective Suppression of Voltage-Gated Currents by CLN1/PPT1 Overexpression in Human Neuronal-Like Cells. Frontiers in cellular neuroscience 7 33390903
2021 Investigation of PAS and CNBH domain interactions in hERG channels and effects of long-QT syndrome-causing mutations with surface plasmon resonance. The Journal of biological chemistry 5 34801551
2026 Integrative GWAS and RNA-seq identify MYL9 as a key regulator of pullorum disease resistance in chickens. Poultry science 0 41671841
2021 The Kv12 voltage-gated K+ channels are expressed in the Phox2b-expressing neurons in the nucleus tractus solitarii in mice. Sheng li xue bao : [Acta physiologica Sinica] 0 33903883
2017 Whole exome analyses to examine the impact of rare variants on left ventricular traits in African American participants from the HyperGEN and GENOA studies. Journal of hypertension and management 0 29503979
2015 The Tau-Induced Reduction of mRNA Levels of Kv Channels in Human Neuroblastoma SK-N-SH Cells. Journal of molecular neuroscience : MN 0 26576773

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