Affinage

JPH1

Junctophilin-1 · UniProt Q9HDC5

Round 2 corrected
Length
661 aa
Mass
71.7 kDa
Annotated
2026-04-28
44 papers in source corpus 5 papers cited in narrative 5 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

JPH1 (junctophilin-1) is a structural membrane-tethering protein that physically bridges the sarcoplasmic reticulum (SR) and T-tubule plasma membrane to form junctional membrane complexes essential for excitation–contraction (EC) coupling in skeletal muscle (PMID:10949023). Its C-terminal hydrophobic segment anchors in the SR membrane while its cytoplasmic domain binds the T-tubule; this domain also directly interacts with the RyR1 Ca²⁺-release channel in a conformation- and redox-sensitive manner through hyper-reactive cysteine residues (Cys101, Cys402, Cys627) (PMID:17237236). JPH1 is subject to Ca²⁺-dependent proteolysis by µ-calpain near its C-terminus, which disrupts EC coupling and is observed in dystrophic muscle (PMID:23148318). Homozygous loss-of-function variants in JPH1 cause congenital myopathy with defective triad junction formation in humans (PMID:39209426).

Mechanistic history

Synthesis pass · year-by-year structured walk · 4 steps
  1. 2000 High

    The identification of junctophilins as a protein family established that a dedicated structural molecule tethers the SR to T-tubules, answering how junctional membrane complexes critical for EC coupling are physically maintained.

    Evidence Molecular cloning, subcellular fractionation, and JP-2-null mouse analysis demonstrating loss of junctional membrane complexes

    PMID:10949023

    Open questions at the time
    • No direct JPH1 knockout phenotype characterized at this stage
    • Identity of JPH1's channel interaction partners unknown
    • Mechanism of plasma membrane binding by the cytoplasmic domain unresolved
  2. 2007 High

    Demonstrating a direct, conformation-sensitive JPH1–RyR1 interaction with redox-sensitive cysteines revealed that JPH1 is not merely a passive tether but an integral component of the Ca²⁺-release channel complex capable of sensing oxidative stress.

    Evidence Co-immunoprecipitation and mass spectrometry–based cysteine mapping with thiol-reactive probes in skeletal muscle preparations

    PMID:17237236

    Open questions at the time
    • Functional consequences of cysteine oxidation on EC coupling not directly measured
    • No structural model of the JPH1–RyR1 interface
    • Whether redox modification of JPH1 occurs in vivo under physiological or pathological conditions was not tested
  3. 2012 High

    Identification of µ-calpain–mediated proteolysis of JPH1 at pathological Ca²⁺ levels, coincident with loss of depolarization-induced force, established a molecular mechanism by which Ca²⁺ overload dismantles the triad junction and disables EC coupling.

    Evidence Biochemical fractionation at defined [Ca²⁺], skinned fibre force measurements, in vitro stimulation, and immunoblotting in wild-type and mdx mouse muscle

    PMID:23148318

    Open questions at the time
    • Exact calpain cleavage site(s) in JPH1 not mapped at residue resolution
    • Whether the released ~75 kDa fragment has any signaling role (as reported for JPH2 N-terminal fragments) is unknown
    • Contribution of JPH1 proteolysis versus other calpain substrates to EC coupling failure not dissected
  4. 2024 Medium

    Discovery of biallelic JPH1 loss-of-function variants causing human congenital myopathy with triad abnormalities demonstrated that JPH1 is non-redundant with JPH2 in skeletal muscle and is required for normal triad formation in humans.

    Evidence Exome/genome sequencing in four unrelated families, RNA-seq expression outlier analysis, and electron microscopy of patient muscle biopsies

    PMID:39209426

    Open questions at the time
    • Single study; independent replication in additional cohorts not yet available
    • Genotype–phenotype correlations across different JPH1 variant types not established
    • Whether residual JPH2 partially compensates in affected patients is uncharacterized

Open questions

Synthesis pass · forward-looking unresolved questions
  • Key unresolved questions include the atomic-resolution structure of JPH1 (alone and in complex with RyR1), the precise calpain cleavage site(s), the in vivo functional consequences of JPH1 cysteine oxidation, and whether the proteolytic N-terminal fragment has nuclear or signaling roles analogous to those described for JPH2.
  • No high-resolution structure of any junctophilin-1 domain or complex
  • Potential nuclear translocation of cleavage fragments untested for JPH1
  • Therapeutic strategies to prevent JPH1 proteolysis in dystrophic or overloaded muscle not explored

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0005198 structural molecule activity 2 GO:0008092 cytoskeletal protein binding 2 GO:0008289 lipid binding 1
Localization
GO:0005783 endoplasmic reticulum 3 GO:0005886 plasma membrane 1
Pathway
R-HSA-397014 Muscle contraction 4 R-HSA-1643685 Disease 1
Partners

Evidence

Reading pass · 5 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2000 JPH1 (JP-1) was identified as a founding member of the junctophilin family of junctional membrane complex proteins. JPH1 is composed of a C-terminal hydrophobic segment that spans the sarcoplasmic reticulum (SR) membrane and a cytoplasmic domain with specific affinity for the plasma membrane (T-tubule), thereby physically bridging T-tubules and SR to form junctional membrane complexes essential for excitation-contraction coupling. Molecular cloning, expression analysis, subcellular fractionation, and characterization of mutant mice lacking JP-2 (which demonstrated deficiency of junctional membrane complexes and abnormal Ca2+ transients, validating the family's role) Molecular cell High 10949023
2007 JPH1 physically interacts with the RyR1 channel complex in a conformationally sensitive manner. Co-immunoprecipitation demonstrated a direct JP1–RyR1 interaction that depends on the conformational/gating state of RyR1. Three hyper-reactive cysteine residues of JPH1 (Cys101, Cys402, Cys627) were identified as redox-sensitive thiols whose chemical status modulates this interaction, suggesting JPH1 contributes integral redox-sensing properties to the RyR1 complex. Co-immunoprecipitation, fluorescent thiol-reactive probe labeling (DAMP), preparative SDS-PAGE, in-gel tryptic digestion, HPLC, and mass spectrometry-based peptide sequencing The Journal of biological chemistry High 17237236
2012 JPH1 undergoes Ca2+-dependent proteolysis mediated by endogenous μ-calpain over the physiological Ca2+ concentration range in skeletal muscle. Cleavage occurs near the C-terminus, yielding a ~75 kDa diffusible fragment and a fixed ~15 kDa SR-embedded fragment. This proteolysis is associated with failure of excitation-contraction coupling: depolarization-induced force responses in skinned rat fibres were abolished following high-Ca2+ exposure coincident with loss of full-length JPH1. Supraphysiological stimulation (repeated tetanic stimulation + caffeine) also produced marked JP1 proteolysis in vitro, and JP1 proteolysis was observed in dystrophic mdx limb muscles at 4 weeks of age. Biochemical fractionation of skeletal muscle homogenates at precisely set [Ca2+], immunoblotting, skinned fibre force measurements, in vitro muscle stimulation, and mdx mouse model analysis The Journal of physiology High 23148318
2024 Homozygous loss-of-function variants in JPH1 (stop-gain and frameshift mutations) cause congenital myopathy with prominent facial, ocular, and bulbar involvement in humans. Ultrastructural analysis of patient muscle biopsies revealed slightly reduced triads and structurally abnormal sarcoplasmic reticulum, directly linking JPH1 loss to defective triad junction formation and establishing JPH1 as essential for connecting the SR and T-tubules in skeletal muscle. Exome/genome sequencing, RNA-seq with gene expression outlier analysis, muscle biopsy ultrastructural analysis (electron microscopy) Journal of medical genetics Medium 39209426
2024 RNAi-mediated knockdown of the C. elegans JPH1 ortholog jph-1 via bacterial feeding altered nervous system physical morphology and impaired thrashing locomotion (muscle endurance), demonstrating a conserved role for junctophilin-1 in muscle physiology and neuronal structure in vivo. RNAi knockdown by bacterial feeding, phenotypic analysis of nervous system morphology and thrashing locomotion assay in C. elegans microPublication biology Low 39381635

Source papers

Stage 0 corpus · 44 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2006 Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. Cell 2861 17081983
2002 Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America 1479 12477932
2015 The BioPlex Network: A Systematic Exploration of the Human Interactome. Cell 1118 26186194
2017 Architecture of the human interactome defines protein communities and disease networks. Nature 1085 28514442
2015 A human interactome in three quantitative dimensions organized by stoichiometries and abundances. Cell 1015 26496610
2020 A reference map of the human binary protein interactome. Nature 849 32296183
2018 VIRMA mediates preferential m6A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. Cell discovery 829 29507755
2021 Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Cell 705 33961781
2011 Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Briefings in bioinformatics 656 21873635
2018 High-Density Proximity Mapping Reveals the Subcellular Organization of mRNA-Associated Granules and Bodies. Molecular cell 580 29395067
2000 Junctophilins: a novel family of junctional membrane complex proteins. Molecular cell 564 10949023
2015 A Dynamic Protein Interaction Landscape of the Human Centrosome-Cilium Interface. Cell 433 26638075
2022 OpenCell: Endogenous tagging for the cartography of human cellular organization. Science (New York, N.Y.) 432 35271311
2010 Systematic analysis of human protein complexes identifies chromosome segregation proteins. Science (New York, N.Y.) 421 20360068
1996 Normalization and subtraction: two approaches to facilitate gene discovery. Genome research 401 8889548
2021 A proximity-dependent biotinylation map of a human cell. Nature 339 34079125
2004 Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. Nature biotechnology 266 15146197
2018 An AP-MS- and BioID-compatible MAC-tag enables comprehensive mapping of protein interactions and subcellular localizations. Nature communications 201 29568061
2020 Systems analysis of RhoGEF and RhoGAP regulatory proteins reveals spatially organized RAC1 signalling from integrin adhesions. Nature cell biology 194 32203420
2020 A High-Density Human Mitochondrial Proximity Interaction Network. Cell metabolism 148 32877691
2009 Ubiquitin-mediated proteolysis of HuR by heat shock. The EMBO journal 142 19322201
2019 Mapping the proximity interaction network of the Rho-family GTPases reveals signalling pathways and regulatory mechanisms. Nature cell biology 137 31871319
2017 RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. BMC biology 135 29117863
1987 Rearrangements to the JP1, JP and JP2 segments in the human T-cell rearranging gamma gene (TRG gamma) locus. FEBS letters 134 2961609
2019 The Functional Proximal Proteome of Oncogenic Ras Includes mTORC2. Molecular cell 124 30639242
2012 Ca2+-dependent proteolysis of junctophilin-1 and junctophilin-2 in skeletal and cardiac muscle. The Journal of physiology 116 23148318
2007 Toward a confocal subcellular atlas of the human proteome. Molecular & cellular proteomics : MCP 114 18029348
2019 Systematic bromodomain protein screens identify homologous recombination and R-loop suppression pathways involved in genome integrity. Genes & development 110 31753913
2010 Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. Molecular medicine (Cambridge, Mass.) 108 20379614
2023 ESCRT-dependent STING degradation inhibits steady-state and cGAMP-induced signalling. Nature communications 104 36739287
2018 Histone Interaction Landscapes Visualized by Crosslinking Mass Spectrometry in Intact Cell Nuclei. Molecular & cellular proteomics : MCP 101 30021884
2014 Anaerobic biodegradation of high-molecular-weight polycyclic aromatic hydrocarbons by a facultative anaerobe Pseudomonas sp. JP1. Biodegradation 68 25091324
2007 Conformation-dependent stability of junctophilin 1 (JP1) and ryanodine receptor type 1 (RyR1) channel complex is mediated by their hyper-reactive thiols. The Journal of biological chemistry 54 17237236
2004 Statistical quantification of detachment rates and size distributions of cell clumps from wild-type (PAO1) and cell signaling mutant (JP1) Pseudomonas aeruginosa biofilms. Applied and environmental microbiology 39 15466523
2020 JP1 suppresses proliferation and metastasis of melanoma through MEK1/2 mediated NEDD4L-SP1-Integrin αvβ3 signaling. Theranostics 30 32724456
2012 Genetic characterization and construction of an auxotrophic strain of Saccharomyces cerevisiae JP1, a Brazilian industrial yeast strain for bioethanol production. Journal of industrial microbiology & biotechnology 17 22892884
2016 Activation of p53/miR-34a Tumor Suppressor Axis by Chinese Herbal Formula JP-1 in A549 Lung Adenocarcinoma Cells. Evidence-based complementary and alternative medicine : eCAM 9 28074102
2019 Association of SNP in JPH1 gene with severity of disease in Charcot Marie Tooth 2K patients. JPMA. The Journal of the Pakistan Medical Association 5 30804591
2022 JP1, a polypeptide specifically targeting integrin αVβ3, ameliorates choroidal neovascularization and diabetic retinopathy in mice. Acta pharmacologica Sinica 4 36280689
1989 Rearrangement of TCR gamma chain gene involving JP1 suggests early thymocyte origin of peripheral T-cell lymphoma. European journal of haematology 3 2470614
2024 Loss-of-function variants in JPH1 cause congenital myopathy with prominent facial and ocular involvement. Journal of medical genetics 2 39209426
2024 Loss-of-function variants in JPH1 cause congenital myopathy with prominent facial involvement. medRxiv : the preprint server for health sciences 1 38370827
2024 Knockdown of the jph-1 gene produces altered nervous system structure and impaired muscle endurance phenotypes in Caenorhabditis elegans. microPublication biology 0 39381635
2019 Complete Genome Sequence of Mycobacterium avium subsp. hominissuis Strain JP-H-1, Isolated from an Equine Abortion Case in Japan. Microbiology resource announcements 0 31776220