| 1994 |
ID3 protein contains a HLH dimerization domain but lacks a basic DNA-binding region; it forms heterodimers with bHLH proteins (E47 homodimers and E47/MyoD heterodimers) and inhibits their DNA-binding activity, functioning as a dominant-negative HLH protein. |
In vitro DNA-binding inhibition assay; heterodimer formation assay |
Nucleic acids research |
High |
8139914
|
| 1996 |
ID3 interacts with E12, E47, ALF1, and Id4 (all HLH proteins) as identified by yeast two-hybrid and confirmed by co-immunoprecipitation; ID3 disrupts DNA binding by these proteins in vitro and blocks transcriptional activation in cultured cells. ID3 preferentially targets E2A-class transcription factors and shows evidence of interacting with E2-2 and MyoD but not c-Myc. |
Yeast two-hybrid screen; co-immunoprecipitation; in vitro DNA-binding disruption assay; transcriptional reporter assay in cultured cells |
Nucleic acids research |
High |
8759016
|
| 1996 |
Stable overexpression of ID3 inhibits differentiation of Sol 8 muscle cells, and both the HLH and C-terminal domains of ID3 are necessary and sufficient for this dominant-negative activity. Overexpression reduces DNA-binding activity in nuclear extracts. |
Stable transfection; domain mutagenesis; nuclear extract DNA-binding assay; in situ hybridization |
Cell growth & differentiation |
High |
8853903
|
| 1996 |
Ectopic ID3 expression in C2C12 myoblasts impairs differentiation and promotes S-phase entry; antisense blockade of ID3 potentiates differentiation and cell cycle exit, establishing ID3 as a negative regulator of differentiation that integrates mitogenic signaling into cell cycle progression. |
Stable and inducible transfection; antisense knockdown; cell cycle analysis |
Cell growth & differentiation |
Medium |
8853902
|
| 1997 |
Cyclin E–Cdk2 and cyclin A–Cdk2 phosphorylate ID3 at a conserved serine residue (Ser5) during late G1-to-S phase transition. A phosphomimetic ID3 Asp5 mutant cannot promote S-phase entry and loses ability to abrogate E-box-dependent bHLH complex formation in vitro and in vivo, whereas a non-phosphorylatable Ala5 mutant has enhanced activity. Cdk2 phosphorylation thus acts as a switch that nullifies ID3's G1 cell-cycle function and modulates its bHLH target specificity. |
In vitro kinase assay; site-directed mutagenesis (Ser5→Asp5 and Ser5→Ala5); E-box reporter assay; cell cycle S-phase entry assay in transfected fibroblasts |
Molecular and cellular biology |
High |
9372912
|
| 1997 |
ID3 prevents adipose differentiation of 3T3-F442A preadipose cells; stably transformed cells expressing ID3 under a viral promoter are virtually unable to differentiate, and ID3 mRNA is actively transcribed in preadipose cells but shows reduced transcription during adipogenesis. |
Stable transfection with constitutive ID3 expression; transcription rate analysis; differentiation assay |
Molecular and cellular biology |
Medium |
9121427
|
| 1998 |
ID3 selectively targets the E2A protein E47 in vivo, as demonstrated by a Gal4-VP16 two-hybrid competition assay; ID3 expression in K562 erythroid progenitors promotes erythroid differentiation correlated with a qualitative shift in TAL1/E-protein heterodimer binding profile at E-box sequences. |
Gal4-VP16 two-hybrid competition assay; E-box-dependent reporter assay; ectopic expression in K562 cells; electrophoretic mobility shift assay |
The Journal of biological chemistry |
Medium |
9525934
|
| 1999 |
Id3 knockout mice show compromised B-cell proliferative response to BCR cross-linking (but not to LPS), reduced humoral immunity, and defects in cytokine production and isotype switching. The proliferation defect is rescued by ectopic Id1 expression, demonstrating a specific, non-redundant role for ID3 in BCR-to-cell-cycle signaling. |
Gene knockout mouse; B-cell proliferation assay; rescue by ectopic Id1 expression; immunoglobulin quantification |
Molecular and cellular biology |
High |
10454544
|
| 1999 |
Id3 null mutant mice display defects in MHC class I- and class II-restricted thymocyte positive selection and impaired H-Y TCR-mediated negative selection. Genetic interaction between E2A and Id3 regulates thymocyte development, placing Id3 in the E2A pathway at the thymocyte selection checkpoint. |
Id3 knockout mouse; thymocyte selection assay; E2A/Id3 double-mutant epistasis |
Immunity |
High |
10661402
|
| 1999 |
Id1/Id3 double knockout mice exhibit premature withdrawal of neuroblasts from the cell cycle, expression of neural differentiation markers, vascular malformations in the forebrain, and failure to support tumor xenograft vascularization, demonstrating that Id1 and Id3 are required to maintain neuronal differentiation timing and endothelial cell invasiveness. |
Double gene knockout mouse; BrdU labeling; neural marker immunostaining; tumor xenograft assay |
Nature |
High |
10537105
|
| 2000 |
Ectopic expression of ID3 (and ID2) in CD34+ hematopoietic progenitors strongly inhibits development into CD123hi DC2 precursors but does not affect DC1 development, NK cell development, or T and B cell development (which are blocked at later stages), supporting a common lymphoid origin for DC2 precursors. |
Retroviral ectopic expression in CD34+ progenitors; fetal thymic organ culture; flow cytometry |
The Journal of experimental medicine |
Medium |
11120774
|
| 2001 |
ID3 transcription is rapidly induced by TCR ligation in primary immature thymocytes, and this induction is regulated in a dose-dependent manner by the ERK MAPK module downstream of TCR signaling, directly connecting the Ras–ERK MAPK cascade to HLH protein activity and E2A DNA binding. |
Primary thymocyte stimulation; mRNA induction kinetics; ERK pathway inhibition; E2A DNA-binding assay |
Nature immunology |
High |
11175815
|
| 2001 |
ID3 is induced by TGF-β in B lymphocyte progenitors and mediates TGF-β-induced apoptosis and growth arrest; in the absence of ID3, the apoptotic/growth-arrest response of lymphocyte progenitors to TGF-β is perturbed, identifying E proteins (whose activity is antagonized by ID3) as critical for lymphocyte survival. |
Id3 knockout mouse; TGF-β stimulation; apoptosis and proliferation assays in lymphocyte progenitors |
Nature immunology |
High |
11224524
|
| 2002 |
ID3 is a novel redox-sensitive gene induced by superoxide (via angiotensin II or xanthine/xanthine oxidase) in vascular smooth muscle cells. ID3 promotes VSMC proliferation by downregulating p21WAF1/Cip1, p27Kip1, and p53, and causes retinoblastoma protein hyperphosphorylation; antisense ID3 abolishes Ang II–induced proliferation. |
Differential display; antisense and sense transfection; superoxide dismutase inhibition; Western blot for cell-cycle regulators; DNA synthesis/BrdU assay |
Circulation |
Medium |
12021231
|
| 2002 |
GKLF (KLF4) binds to the Id3 promoter and transcriptionally represses Id3 expression, while Id3 reciprocally depresses expression of p21WAF1/Cip1, p27KIP1, and p53, establishing a GKLF–ID3 axis controlling redox-sensitive VSMC proliferation. |
Transfection with GKLF and antisense Id3; promoter binding analysis; gene expression assays; vascular injury mouse model |
FASEB journal |
Medium |
12087069
|
| 2004 |
TGF-β1 causes long-term repression of ID2 and ID3, while BMP-7 induces sustained ID2/ID3 expression. Ectopic ID3 expression renders epithelial cells refractory to TGF-β-induced growth inhibition and epithelial-mesenchymal transition (EMT), phenocopying the BMP response. Knockdown of ID3 sensitizes cells to BMP-induced growth inhibition and transdifferentiation. |
cDNA microarray; ectopic overexpression; siRNA knockdown; growth inhibition assay; EMT morphology assessment; Smad4-deficient cells |
Molecular and cellular biology |
High |
15121845
|
| 2004 |
ID3 has a T-cell intrinsic role in preventing autoimmune Sjögren's syndrome. Adoptive transfer of Id3-deficient T cells into wild-type recipients recapitulates disease symptoms (dry eyes/mouth, lymphocyte infiltration), and neonatal thymectomy or genetic T-cell ablation rescues disease in Id3 KO mice, indicating that abnormal T cells generated during thymic development drive the autoimmune phenotype. |
Id3 knockout mouse; adoptive transfer; neonatal thymectomy; T-cell ablation |
Immunity |
High |
15485632
|
| 2004 |
ID3 (and ID1) undergo ubiquitin-dependent proteasomal degradation mediated by the COP9 signalosome (CSN). ID3 physically interacts with CSN subunits CSN5 and CSN7 (demonstrated by pull-down and far Western). Recombinant ID3 is not phosphorylated by CSN-associated kinases CK2 and PKD, but inhibits c-Jun and CSN2 phosphorylation by CK2. Inhibition of CSN-associated kinases by curcumin or emodin increases ID3 ubiquitination and degradation. Overexpression of CSN2 stabilizes ID3 protein. |
Mammalian two-hybrid; pull-down; far Western; in vitro kinase assay; co-transfection with His-ubiquitin; proteasome inhibitor treatment; His-pull-down for ubiquitin conjugates |
Journal of molecular biology |
High |
15451666
|
| 2004 |
Latent membrane protein 1 (LMP1) of Epstein-Barr virus induces ID1 and ID3 expression via NF-κB and MAPK signaling; ID3 induction correlates with downregulation of p27Kip1, increased Cdk2 levels, and retinoblastoma protein hyperphosphorylation in LMP1-transformed cells. |
Genomic expression array; mRNA and protein validation; stable LMP1 expression in C33A and Rat-1 cells |
Journal of virology |
Medium |
15564458
|
| 2004 |
E2A/HEB heterodimers bind an E-box element in the SRG3 promoter to activate its transcription, and ID3 (induced by TCR→MEK/ERK) represses SRG3 by blocking this E-box binding. Enforced ID3 expression confers glucocorticoid resistance in thymocytes; overexpression of SRG3 overcomes ID3-mediated glucocorticoid resistance. |
Promoter-reporter assay; electrophoretic mobility shift assay (EMSA); retroviral transduction of Id3; SRG3 overexpression rescue |
The Journal of biological chemistry |
Medium |
15016815
|
| 2004 |
Id3 is a direct transcriptional target of Pax7 in quiescent satellite cells; chromatin immunoprecipitation shows Pax7 binding upstream of the Id3 promoter in quiescent satellite cells, a conserved Pax7-binding site is required for maximal promoter activation, and shRNA knockdown of Pax7 coordinately reduces Id2 and Id3 expression. |
Chromatin immunoprecipitation (ChIP); luciferase reporter assay with mutagenesis of Pax7 binding site; shRNA knockdown; ectopic Pax7 expression |
Molecular biology of the cell |
High |
19458195
|
| 2001 |
Vascular injury induces expression of a novel ID3 isoform (Id3a/Id3L) generated by alternative splicing retaining a 115-bp coding intron that encodes a unique 29-amino acid C-terminus. Unlike canonical ID3, Id3a does not promote SMC growth but instead stimulates apoptosis and inhibits neointimal lesion formation in vivo. |
Yeast two-hybrid cloning from SMC library; RT-PCR; adenoviral overexpression in SMCs; balloon injury rat carotid model; DNA fragmentation assay |
Arteriosclerosis, thrombosis, and vascular biology |
Medium |
11348870
|
| 2004 |
The intron-retaining Id3a isoform fails to promote SMC S-phase entry or inhibit p21Cip1 transcription (unlike canonical Id3), but instead stimulates apoptosis and inhibits vascular lesion formation; adenoviral delivery of Id3a inhibits lesion formation in balloon-injured rat carotid arteries in vivo, defining a feedback loop via regulated intron retention. |
Adenoviral gene transfer; BrdU S-phase assay; p21 promoter reporter; in vivo balloon injury carotid model; Id3a-specific antibody |
The Journal of biological chemistry |
Medium |
15159391
|
| 2007 |
Id3 regulates p27kip1 mRNA levels in early G1 phase through transcriptional repression via ELK1 inhibition. Id3 silencing prevents p27 mRNA downregulation, blocks G1 progression (inhibits pRb phosphorylation and p130 degradation), and inhibits G1/S transition (blocks cyclin A induction). ChIP confirms Id3-mediated repression through ELK1 at the p27 promoter. |
siRNA knockdown; quantitative RT-PCR; promoter-reporter assay; chromatin immunoprecipitation (ChIP); cell cycle analysis |
Oncogene |
High |
17404577
|
| 2008 |
ID3 inhibits E47-mediated and SREBP-1c-mediated adiponectin promoter activation in a dose-dependent manner by interacting with E47 and preventing its binding to a consensus E-box in the adiponectin promoter. ChIP demonstrates E47 binding to the endogenous adiponectin promoter in differentiating adipocytes, which is abolished by ID3 overexpression and enhanced in Id3-null adipose tissue. |
Luciferase promoter assay; chromatin immunoprecipitation (ChIP); Id3 knockout mouse; ectopic overexpression; E-box mutation |
Circulation research |
High |
18669923
|
| 2009 |
The ERK–Egr–Id3 pathway plays a defining role in αβ vs. γδ T lineage fate specification: Id3 is markedly induced by γδTCR signaling and is necessary and sufficient to enable γδ-lineage cells to differentiate independently of Notch signaling and become competent IFN-γ-producing effectors. |
Id3 knockout mouse; retroviral Id3 overexpression; Notch inhibition; cytokine production assay; ERK pathway analysis |
Immunity |
High |
19833086
|
| 2011 |
Blimp-1 binds to and represses the Id3 promoter in short-lived effector CD8+ T cells (SLECs); repression of Id3 by Blimp-1 limits SLEC persistence as memory cells. Enforced Id3 expression restores SLEC survival and enhances recall responses. ID3 function in this context is mediated in part through inhibition of E2A transcriptional activity and induction of genes regulating genome stability. |
Chromatin immunoprecipitation; retroviral enforced expression of Id3; Id3 reporter mice; KLRG-1 memory cell analysis |
Nature immunology |
High |
22057288
|
| 2011 |
Id3hi precursors of long-lived CD8+ memory T cells are identifiable before the peak of T cell expansion using Id3 reporter mice. Deficiency in Id3 results in loss of distinct long-lived memory CD8+ T cell populations. Cytokines differentially regulate Id2 and Id3, linking external cues to gene expression programs controlling memory vs. effector fate. |
Id3 reporter knock-in mouse; Id3 knockout mouse; flow cytometry of memory populations; cytokine stimulation |
Nature immunology |
High |
22057289
|
| 2011 |
E2A genome-wide occupancy is altered by pre-TCR-mediated signaling; Id3 expression is higher beyond the pre-TCR checkpoint and remains high in naive T cells. Id3-deficient mice show aberrant effector-memory T cell development, elevated CXCR5 and Bcl-6, and formation of T cell–B cell conjugates and B cell follicles, demonstrating that Id3 antagonizes E2A activity to enforce the naive T cell fate. |
Id3 knockout mouse; E2A ChIP-seq (genome-wide occupancy); flow cytometry; immunohistology |
Nature immunology |
High |
21857655
|
| 2012 |
ID1 and ID3 together govern colon cancer-initiating cell (CC-IC) self-renewal through regulation of p21 (CDKN1A). ID1/ID3 regulation of p21 is a central mechanism preventing accumulation of excess DNA damage and functional exhaustion of CC-ICs. Silencing of ID1 and ID3 increases sensitivity to oxaliplatin. |
siRNA silencing; serial transplantation (CC-IC self-renewal assay); p21 expression analysis; oxaliplatin sensitivity assay |
Cancer cell |
Medium |
22698403
|
| 2012 |
Burkitt lymphoma carries recurrent somatic mutations in ID3 (68% of cases), concentrated at somatic hypermutation motifs, and many are in regions that could impair ID3 protein function (mapped to focal homozygous loss region at 1p). These mutations are enriched in Burkitt lymphoma compared with other B-cell lymphomas with IG-MYC translocation, establishing ID3 inactivation as a hallmark cooperating event in Burkitt lymphomagenesis. |
Whole-genome sequencing; whole-exome sequencing; transcriptome sequencing; extended cohort mutation analysis |
Nature genetics |
High |
23143595
|
| 2012 |
Loss of Id3 in B cells impairs their homing to the aorta and B-cell-mediated atheroprotection; the CCR6 chemokine receptor is identified as an Id3 target mediating aortic B-cell homing. Id3-null B cells transferred into B-cell-deficient mice fail to reconstitute aortic B cells and fail to protect against atherosclerosis. |
Id3 knockout in Apoe-/- mice; adoptive B-cell transfer; flow cytometry; atherosclerosis quantification; CCR6 expression analysis |
Circulation research |
Medium |
22034493
|
| 2012 |
ID3 suppresses glioma stem cell invasiveness by inhibiting p27KIP1-RhoA-dependent migration and MMP3 expression; EGFR inhibition decreases ID3 levels, thereby promoting invasion via these downstream effectors. |
EGFR inhibition; ID3 knockdown; p27KIP1 and MMP3 expression analysis; invasion assay; xenograft and human GBM specimens |
Cancer letters |
Medium |
23022473
|
| 2012 |
Id3 loss in Ldlr-/- mice increases VCAM-1 expression in vascular smooth muscle cells and aortic tissue. ChIP demonstrates that E12 binds the VCAM-1 promoter in VSMCs, and this binding is inhibited by Id3 overexpression; Id3 deficiency increases macrophage accumulation and accelerates atherosclerosis. |
Id3 knockout in Ldlr-/- mice; ChIP; VCAM-1 promoter reporter; primary VSMC gain/loss-of-function; immunostaining |
Arteriosclerosis, thrombosis, and vascular biology |
Medium |
23042815
|
| 2014 |
ID2 and ID3 expression in regulatory T cells is required to suppress fatal inflammatory disease; TCR-driven signaling decreases Id3 abundance to activate a follicular regulatory T (TFR) cell transcription signature, but sustained loss of Id2/Id3 impairs TFR cell development. Id2/Id3 depletion compromises Treg cell maintenance and localization. |
Conditional Id2/Id3 knockout in Treg cells; flow cytometry; transcriptional profiling; adoptive transfer |
Nature immunology |
High |
24973820
|
| 2015 |
TGF-β1 and IL-4 downregulate ID3 expression via the kinase TAK1; reduction in ID3 enhances binding of E2A and GATA-3 to the Il9 promoter to promote Il9 transcription and TH9 differentiation. Deletion of Id3 increases IL-9 production from CD4+ T cells, identifying a TAK1–Id3–E2A–GATA-3 pathway governing TH9 fate. |
Id3 knockout mouse; cytokine stimulation; TAK1 inhibition; chromatin immunoprecipitation (E2A/GATA-3 at Il9 promoter); IL-9 production assay; melanoma model |
Nature immunology |
High |
26322481
|
| 2015 |
Id3 depletion in adult neural stem/precursor cells (NSPCs) reduces astrocyte generation after cortical brain injury. BMP-2 upregulates Id3 in the SVZ stem cell niche after injury; Id3-deficient NSPCs fail to differentiate into BMP-2-induced astrocytes, while E47-deficient NSPCs differentiate into astrocytes without BMP-2. E47 represses astrocyte-specific gene expression and Id3 antagonizes E47 to promote astrocyte differentiation. |
Id3 knockout mouse; E47 conditional knockout; cortical injury model; neurosphere culture; astrocyte differentiation assay; BMP-2 treatment |
The EMBO journal |
High |
26438726
|
| 2016 |
Id3 downregulation in B cells is essential for releasing E2A and E2-2 (redundantly required) for antigen-induced B cell differentiation into germinal center B cells and plasma cells; this pathway controls Blimp1, Xbp1, and CXCR4 expression and is critical for establishing the GC transcriptional network. |
Id3 knockout mouse; B-cell differentiation assay; flow cytometry; gene expression analysis; antibody titer measurement |
The Journal of experimental medicine |
High |
27217539
|
| 2016 |
In regulatory T cells, high Id3 expression restricts E47 activity to maintain Foxp3 transcription. Loss of Id3 or overexpression of E47 in Treg cells results in loss of Foxp3 expression; mechanistically, E47 activates Spi-B and SOCS3 expression, both of which downregulate Foxp3. Thus Id3–E47–Spi-B/SOCS3 is the pathway controlling Foxp3 stability. |
Id3-conditional KO; E47 retroviral overexpression; Foxp3 expression assay in vivo and in vitro; Spi-B and SOCS3 expression analysis |
Cell reports |
Medium |
27974197
|
| 2017 |
In response to DNA double-strand breaks, ATM phosphorylates ID3 at serine 65 within the HLH motif. This phosphorylation enables a direct interaction between ID3 and MDC1. Depletion of ID3 impairs MDC1 foci formation, suppresses γ-H2AX-bound MDC1, impairs DSB repair, causes cellular hypersensitivity to ionizing radiation, and leads to genomic instability. Disruption of the MDC1–ID3 interaction prevents MDC1 accumulation at DSB sites. |
Co-immunoprecipitation; ATM kinase assay; phospho-specific mutant analysis; siRNA depletion; immunofluorescence foci assay; comet assay; clonogenic survival assay |
Nature communications |
High |
29026069
|
| 2010 |
BMP2 stimulates ID3 transcription via BMPR2 and BMPR1A (ALK3) receptors and intracellular SMAD1 and SMAD5 signaling. Two cis-regulatory elements mediate this induction: a novel 6-bp proximal element and a distal SMAD-responsive enhancer. The proximal element does not bind SMADs directly but binds a specific protein complex. |
Quantitative RT-PCR; promoter-reporter analysis; receptor and SMAD overexpression; RNA interference; cis-element mutagenesis |
Molecular and cellular endocrinology |
Medium |
21056086
|
| 2017 |
ANGPTL4 binds to cadherin-11, releasing membrane-bound β-catenin, which translocates to the nucleus and transcriptionally upregulates ID3 expression in fibroblasts. ID3 then interacts with scleraxis (a bHLH transcription factor) to inhibit scar-associated collagen types 1α2 and 3α1 production. |
Co-immunoprecipitation; ANGPTL4/cadherin-11 binding assay; nuclear β-catenin fractionation; Id3 promoter reporter; Id3 siRNA; collagen expression assay |
Scientific reports |
Medium |
28740178
|
| 2018 |
CD5L promotes M2 macrophage polarization by inducing ID3 expression through an autophagy-dependent pathway requiring ATG7. siRNA targeting ATG7 blocks CD5L-induced ID3 upregulation, and ID3 silencing reverses CD5L-mediated polarization, placing ID3 downstream of CD5L-induced autophagy in macrophage polarization. |
siRNA silencing of ATG7 and ID3; LC3-II content and colocalization assay; gene expression profiling; flow cytometry |
Frontiers in immunology |
Medium |
29593730
|
| 2019 |
ID3 interacts with E47 and blocks E47 recruitment to the β-catenin promoter, leading to activation of Wnt/β-catenin signaling and promotion of stemness in intrahepatic cholangiocarcinoma cells. |
Co-immunoprecipitation (ID3–E47); chromatin immunoprecipitation (E47 at β-catenin promoter); ID3 overexpression/knockdown; Wnt/β-catenin reporter; in vivo xenograft |
Hepatology |
Medium |
30520117
|
| 2024 |
ID3 is the lineage-determining factor for Kupffer cells that controls the macrophage inhibitory/activating receptor balance and confers anti-tumor phagocytic activity. Mechanistically, ID3 buffers binding of transcription factors ELK1 and E2A at the SIRPA (SIRPα) locus to reduce inhibitory receptor expression. Loss- and gain-of-function in both mouse bone-marrow-derived and human iPSC-derived macrophages confirm ID3 is sufficient to confer potent anti-tumor activity. |
Id3 loss-of-function and gain-of-function in macrophages; ChIP for ELK1 and E2A at SIRPA locus; phagocytosis assay of live tumor cells; NK/CD8 T cell recruitment assay; human iPSC-derived macrophage experiments |
Nature |
High |
38326607
|
| 2025 |
ID3 expression identifies a common progenitor of stem-like memory and precursors of exhausted CD8+ T cells (Tpex). ID3 expression itself is required for Tpex cell maintenance during chronic infection and cancer; loss of ID3 results in impaired CD8 T cell immunity. IL-1 family members (IL-36β and IL-18) promote generation of ID3+ stem-like T cells with superior tumor control. |
Id3 knockout mouse; Id3 reporter; adoptive transfer; chronic infection models; tumor models; cytokine stimulation |
Science immunology |
High |
39888981
|