Affinage

HSD3B2

3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase type 2 · UniProt P26439

Length
372 aa
Mass
42.1 kDa
Annotated
2026-06-10
40 papers in source corpus 12 papers cited in narrative 12 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 7/7 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

HSD3B2 encodes a NAD+-dependent 3β-hydroxysteroid dehydrogenase/Δ5-Δ4 isomerase that catalyzes the conversion of Δ5-steroids to Δ4-steroids in adrenal and gonadal steroidogenesis, and loss-of-function mutations cause 3β-HSD deficiency with a genotype–phenotype correlation in which severe salt-wasting forms reflect complete loss of catalytic activity while non-salt-losing forms retain residual activity (PMID:10599696). Catalytic competence depends on an intact NAD+-binding domain: the A10E substitution at Ala10 abolishes activity (PMID:10843183), and the G250V substitution disrupts an L239-Q251 loop adjacent to a β-sheet in this domain, lowering Vmax for progesterone synthesis without altering substrate affinity, protein level, or localization (PMID:25322271). A separate substrate-binding pocket governs substrate handling, as the Y190C and S218P mutations adjacent to this pocket impair activity in a substrate-specific manner, retaining greater residual activity toward 17-OH pregnenolone than other Δ5-steroids (PMID:24372086). Some disease alleles act through protein instability rather than direct catalytic impairment (PMID:10599696). In human adrenal cortex, HSD3B2 is co-expressed with cytochrome b5 (CYB5A) in hybrid cells at the zona fasciculata/zona reticularis border, and together they drive androstenedione production (PMID:21185375). HSD3B2 transcription is governed by multiple factors: YY1 binding at two sites within intron 1 is required for maximal basal promoter activity (PMID:15291746), GATA1 binds the promoter to activate expression and androgen biosynthesis (PMID:30650063), and cAMP-stimulated recruitment of the orphan nuclear receptor Nur77 to the promoter is suppressed by decanoic acid and metformin (PMID:26465200). Enzyme output is additionally modulated indirectly through mitochondrial complex I, since metformin and rotenone inhibit HSD3B2 activity via complex I inhibition rather than AMPK or ERK signaling (PMID:22778212).

Mechanistic history

Synthesis pass · year-by-year structured walk · 11 steps
  1. 1994 Low

    Established that loss of HSD3B2 protein underlies severe salt-wasting 3β-HSD deficiency by identifying a frameshift truncating allele in affected patients.

    Evidence Direct sequencing and haplotype analysis of a homozygous 273-delta-AA frameshift producing a premature stop at codon 279

    PMID:8004103

    Open questions at the time
    • No functional expression assay was performed to confirm the predicted null
    • Does not address milder allelic forms or residual-activity mutations
  2. 1999 High

    Resolved the genotype–phenotype basis of 3β-HSD deficiency by showing that disease severity tracks with quantitative residual enzyme activity, and that some mutations act through protein instability.

    Evidence Site-directed mutagenesis of 25 missense mutants, transient expression in 293 cells, [14C]-DHEA substrate assay, plus Northern/Western and in vitro translation

    PMID:10599696

    Open questions at the time
    • Activity measured in cell expression systems, not purified reconstituted enzyme
    • Does not map which structural domains each mutation perturbs
  3. 2000 Medium

    Pinpointed a single NAD+-binding-domain residue (Ala10) as essential for catalysis by showing A10E abolishes all detectable activity.

    Evidence Direct sequencing and transient expression with enzymatic activity assay in Ad293 cells

    PMID:10843183

    Open questions at the time
    • Single mutation in one lab
    • No structural model linking Ala10 to cofactor binding in this study
  4. 2004 Medium

    Identified the first transcriptional driver of HSD3B2 by mapping YY1 binding within intron 1 as required for maximal basal promoter activity.

    Evidence Reporter assays, gel shift with anti-YY1 supershift, competition and mutational analysis in transient transfection

    PMID:15291746

    Open questions at the time
    • Basal promoter context only; hormonal regulation not addressed
    • In vivo occupancy in adrenal tissue not demonstrated
  5. 2010 Medium

    Defined a functional partnership in which HSD3B2 co-expressed with CYB5A in zona fasciculata/reticularis hybrid cells produces androstenedione.

    Evidence Immunolocalization in human adrenal plus trilostane inhibition and CYB5A siRNA knockdown with steroid measurement in H295R cells

    PMID:21185375

    Open questions at the time
    • Does not establish direct physical interaction between HSD3B2 and CYB5A
    • Functional contribution quantified only in a cell line
  6. 2012 Medium

    Revealed an indirect metabolic route of enzyme regulation by linking metformin-mediated HSD3B2 inhibition to mitochondrial complex I rather than AMPK/ERK/PKC signaling.

    Evidence Activity and expression assays, rotenone pharmacological epistasis, and organic cation transporter dependency in NCI-H295R cells

    PMID:22778212

    Open questions at the time
    • Molecular link between complex I status and HSD3B2 catalysis/expression unresolved
    • Single cell-line model
  7. 2014 Medium

    Distinguished substrate-binding from cofactor-binding determinants by showing Y190C and S218P mutations near the substrate pocket impair activity in a substrate-selective manner.

    Evidence In vitro enzymatic assays in transfected cells, site-directed mutagenesis, and 3D homology modeling

    PMID:24372086

    Open questions at the time
    • Pocket conformation inferred from homology model, no experimental structure
    • Only two mutations characterized
  8. 2015 Medium

    Localized a catalytically critical loop in the NAD+-binding domain by showing G250V lowers Vmax for progesterone without changing Km, expression, or localization.

    Evidence Michaelis-Menten kinetics in COS-7 cells, Western blot, immunofluorescence, and homology modeling of the L239-Q251 loop

    PMID:25322271

    Open questions at the time
    • Loop importance inferred from modeling, not crystal structure
    • Single mutation
  9. 2015 Medium

    Connected cAMP signaling to HSD3B2 transcription by showing decanoic acid and metformin reduce cAMP-stimulated Nur77 recruitment to the promoter.

    Evidence Dual luciferase reporter, ChIP promoter recruitment, RT-PCR, Western blot, and testosterone ELISA in NCI-H295R cells and a rat PCOS model

    PMID:26465200

    Open questions at the time
    • Whether Nur77 acts directly or via cofactors at the promoter not resolved
    • Single lab
  10. 2016 Low

    Excluded DNA methylation as the mechanism of zona reticularis-specific HSD3B2 downregulation, narrowing the search for the responsible regulator.

    Evidence RT-qPCR and methylation analysis on microdissected adrenal zones showing absence of CpG islands and zone-specific methylation

    PMID:27670690

    Open questions at the time
    • Negative finding; the actual zone-specific repressor remains unidentified
    • Limited to methylation as a candidate mechanism
  11. 2019 Medium

    Identified GATA1 as a promoter-binding activator of HSD3B2 driving androgen biosynthesis, targetable pharmacologically.

    Evidence Expression profiling, dual luciferase, RNAi, promoter mutagenesis, ChIP recruitment, Western blot and ELISA in NCI-H295R cells

    PMID:30650063

    Open questions at the time
    • Interplay between GATA1, YY1, and Nur77 at the locus not integrated
    • Single cell-line system

Open questions

Synthesis pass · forward-looking unresolved questions
  • An experimentally determined structure of HSD3B2 and the identity of the zone-specific repressor controlling its adrenal expression pattern remain unresolved.
  • Catalytic-domain assignments rest on homology models, not solved structures
  • The factor responsible for zona reticularis-specific downregulation is unknown

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0016491 oxidoreductase activity 3 GO:0016853 isomerase activity 1
Pathway
R-HSA-1430728 Metabolism 2
Partners

Evidence

Reading pass · 12 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1999 Functional characterization of 25 HSD3B2 missense mutations by transient expression in 293 cells demonstrated that severe salt-wasting forms result from complete loss of enzyme activity, while non-salt-losing forms retain residual enzymatic activity. Additionally, some mutations cause disease through protein instability rather than direct catalytic impairment. Site-directed mutagenesis, transient expression in 293 cells, [14C]-DHEA substrate assay, Northern/Western blot, in vitro transcription/translation The Journal of clinical endocrinology and metabolism High 10599696
2000 The A10E mutation in the NAD-binding domain of HSD3B2 abolishes all detectable enzymatic activity when expressed in transfected Ad293 cells, establishing that Ala10 is critical for catalytic function. Direct sequencing, transient expression in Ad293 cells, enzymatic activity assay The Journal of clinical endocrinology and metabolism Medium 10843183
2012 Metformin inhibits HSD3B2 enzymatic activity and decreases HSD3B2 expression in NCI-H295R steroidogenic cells. This inhibition is dependent on organic cation transporters for metformin uptake and is mediated through inhibition of mitochondrial complex I (not AMPK, ERK1/2, or atypical PKC signaling). Direct inhibition of complex I by rotenone also inhibits HSD3B2 activity, establishing the mechanistic link. Enzymatic activity assay, mRNA/protein expression analysis, pharmacological inhibition (rotenone), AMPK/ERK signaling analysis, organic cation transporter dependency assay in NCI-H295R cells Endocrinology Medium 22778212
2004 The transcription factor YY1 binds to two sites within HSD3B2 intron 1 and is required for maximal basal promoter activity. YY1 binding to the second intron 1 site (35 bp downstream of the 3beta1-A element) strongly activates HSD3B2 basal promoter, as abrogating this binding causes a ~50% decrease in transcription. Complete loss of YY1 binding within intron 1 reduces promoter activity to the same level as constructs lacking the entire intron 1. Reporter gene assay, gel shift assay, anti-YY1 antibody supershift, competition analysis, mutational analysis, transient transfection Journal of molecular endocrinology Medium 15291746
2010 HSD3B2 and cytochrome b5 (CYB5A) are co-expressed in hybrid cortical cells at the zona fasciculata/zona reticularis border in human adrenal glands and together contribute to androstenedione production; inhibition of HSD3B2 with trilostane or siRNA knockdown of CYB5A both significantly reduced androstenedione production in H295R cells. Immunohistochemistry/immunolocalization, siRNA knockdown, pharmacological inhibition with trilostane, steroid hormone measurement in H295R cells The Journal of steroid biochemistry and molecular biology Medium 21185375
2015 Decanoic acid (DA) inhibits HSD3B2 expression and androgen biosynthesis in NCI-H295R cells through a cAMP-dependent mechanism: both DA and metformin reduce cAMP-stimulated recruitment of the orphan nuclear receptor Nur77 to the HSD3B2 promoter, decreasing HSD3B2 transcription and protein expression. Reporter gene assay (dual luciferase), chromatin immunoprecipitation/promoter recruitment assay, RT-PCR, Western blot, testosterone ELISA in NCI-H295R cells and rat PCOS model Endocrinology Medium 26465200
2019 GATA1 is an activating transcription factor that binds the HSD3B2 promoter to drive its expression and androgen biosynthesis. Baicalin inhibits androgen production by reducing GATA1 recruitment to the HSD3B2 promoter, identified via gene expression profiling, dual luciferase assay, RNA interference, and genetic mutations in NCI-H295R cells. Gene expression profiling, dual luciferase assay, RNA interference (siRNA), site-directed mutagenesis of promoter, ChIP (promoter recruitment), Western blot, ELISA The Journal of endocrinology Medium 30650063
2014 Two novel HSD3B2 missense mutations (Y190C and S218P), located adjacent to the predicted substrate-binding pocket in a structural model, severely impair enzymatic activity but with substrate-specific residual activity: both mutants retain higher residual activity toward 17-OH pregnenolone than toward other Δ5-steroids, suggesting these residues influence substrate-binding pocket conformation differentially for different substrates. In vitro enzymatic activity assay in transfected cells, 3D structural homology modeling, site-directed mutagenesis Clinical endocrinology Medium 24372086
2015 The G250V mutation in HSD3B2 reduces Vmax for progesterone synthesis without affecting Km for pregnenolone, and does not alter protein expression or intracellular localization. Molecular modeling predicts that G250V disrupts an L239-Q251 loop adjacent to a β-sheet in the NAD+-binding domain, establishing this loop as important for catalytic activity. In vitro enzymatic activity assay in COS-7 cells, Michaelis-Menten kinetics (Km/Vmax), Western blot, immunofluorescence, molecular homology modeling The Journal of clinical endocrinology and metabolism Medium 25322271
2011 Sunitinib inhibits HSD3B2 by downregulating its mRNA and protein expression in adrenocortical carcinoma cells (NCI-H295 and SW13), but does NOT directly inhibit HSD3B2 enzyme activity as tested in yeast microsomes expressing HSD3B2. RT-PCR, Western blot, gas chromatography-mass spectrometry steroid measurement, yeast microsome enzymatic activity assay Frontiers in endocrinology Medium 22654799
2016 DNA methylation is not involved in the zona reticularis-specific downregulation of HSD3B2 in the human adrenal cortex, as HSD3B2 lacks CpG islands and no zone-specific methylation differences were detected. RT-qPCR, methylation analysis, microdissected adrenal zone samples Molecular and cellular endocrinology Low 27670690
1994 A homozygous frameshift mutation (273 delta AA, deletion of two adenosines at codon 273) in HSD3B2 leads to a premature stop codon at position 279, establishing loss-of-function as the molecular basis of severe salt-wasting 3β-HSD deficiency in affected patients. Direct sequencing of PCR products, haplotype analysis Human molecular genetics Low 8004103

Source papers

Stage 0 corpus · 40 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2012 Metformin inhibits human androgen production by regulating steroidogenic enzymes HSD3B2 and CYP17A1 and complex I activity of the respiratory chain. Endocrinology 87 22778212
1999 New insight into the molecular basis of 3beta-hydroxysteroid dehydrogenase deficiency: identification of eight mutations in the HSD3B2 gene eleven patients from seven new families and comparison of the functional properties of twenty-five mutant enzymes. The Journal of clinical endocrinology and metabolism 83 10599696
2002 Joint effect of HSD3B1 and HSD3B2 genes is associated with hereditary and sporadic prostate cancer susceptibility. Cancer research 70 11912155
2004 Refining hormonal diagnosis of type II 3beta-hydroxysteroid dehydrogenase deficiency in patients with premature pubarche and hirsutism based on HSD3B2 genotyping. The Journal of clinical endocrinology and metabolism 57 15585552
2000 A novel A10E homozygous mutation in the HSD3B2 gene causing severe salt-wasting 3beta-hydroxysteroid dehydrogenase deficiency in 46,XX and 46,XY French-Canadians: evaluation of gonadal function after puberty. The Journal of clinical endocrinology and metabolism 35 10843183
1994 Congenital adrenal hyperplasia caused by a novel homozygous frameshift mutation 273 delta AA in type II 3 beta-hydroxysteroid dehydrogenase gene (HSD3B2) in three male patients of Afghan/Pakistani origin. Human molecular genetics 32 8004103
2015 A Dietary Medium-Chain Fatty Acid, Decanoic Acid, Inhibits Recruitment of Nur77 to the HSD3B2 Promoter In Vitro and Reverses Endocrine and Metabolic Abnormalities in a Rat Model of Polycystic Ovary Syndrome. Endocrinology 31 26465200
2000 Mutations in the type II 3beta-hydroxysteroid dehydrogenase (HSD3B2) gene can cause premature pubarche in girls. Clinical endocrinology 31 10651755
2011 Sunitinib Inhibits Cell Proliferation and Alters Steroidogenesis by Down-Regulation of HSD3B2 in Adrenocortical Carcinoma Cells. Frontiers in endocrinology 30 22654799
1995 Genetic linkage mapping of HSD3B1 and HSD3B2 encoding human types I and II 3 beta-hydroxysteroid dehydrogenase/delta 5-delta 4-isomerase close to D1S514 and the centromeric D1Z5 locus. Cytogenetics and cell genetics 30 7835088
2010 Association of HSD3B1 and HSD3B2 gene polymorphisms with essential hypertension, aldosterone level, and left ventricular structure. European journal of endocrinology 29 20660004
2007 SRD5A2 and HSD3B2 polymorphisms are associated with prostate cancer risk and aggressiveness. The Prostate 29 17823934
2012 Estrogen synthesis genes CYP19A1, HSD3B1, and HSD3B2 in hypertensive disorders of pregnancy. Endocrine 28 22638611
2010 Human adrenal cells that express both 3β-hydroxysteroid dehydrogenase type 2 (HSD3B2) and cytochrome b5 (CYB5A) contribute to adrenal androstenedione production. The Journal of steroid biochemistry and molecular biology 28 21185375
2015 Severe Salt-Losing 3β-Hydroxysteroid Dehydrogenase Deficiency: Treatment and Outcomes of HSD3B2 c.35G>A Homozygotes. The Journal of clinical endocrinology and metabolism 23 26079780
2012 A novel homozygous Q334X mutation in the HSD3B2 gene causing classic 3β-hydroxysteroid dehydrogenase deficiency: an unexpected diagnosis after a positive newborn screen for 21-hydroxylase deficiency. Hormone research in paediatrics 22 22343390
2012 Polymorphisms in AKR1C4 and HSD3B2 and differences in serum DHEAS and progesterone are associated with paranoid ideation during mania or hypomania in bipolar disorder. European neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology 22 22356824
2012 In silico structural, functional and pathogenicity evaluation of a novel mutation: an overview of HSD3B2 gene mutations. Gene 22 22579964
2018 HSD3B2, HSD17B1, HSD17B2, ESR1, ESR2 and AR expression in infertile women with endometriosis. Ginekologia polska 21 29664547
2019 Baicalin inhibits recruitment of GATA1 to the HSD3B2 promoter and reverses hyperandrogenism of PCOS. The Journal of endocrinology 19 30650063
2003 Carriers for type II 3beta-hydroxysteroid dehydrogenase (HSD3B2) deficiency can only be identified by HSD3B2 genotype study and not by hormone test. Clinical endocrinology 15 12608938
2014 Two novel HSD3B2 missense mutations with diverse residual enzymatic activities for Δ5-steroids. Clinical endocrinology 14 24372086
2015 A novel missense mutation in the HSD3B2 gene, underlying nonsalt-wasting congenital adrenal hyperplasia. new insight into the structure-function relationships of 3β-hydroxysteroid dehidrogenase type II. The Journal of clinical endocrinology and metabolism 9 25322271
2000 Genotyping of the type II 3beta-hydroxysteroid dehydrogenase gene (HSD3B2) in women with hirsutism and elevated ACTH-stimulated delta(5)-steroids. Fertility and sterility 9 10973654
2016 A New Homozygous Frameshift Mutation in the HSD3B2 Gene in an Apparently Nonconsanguineous Italian Family. Hormone research in paediatrics 8 27082427
2018 Mutation of HSD3B2 Gene and Fate of Dehydroepiandrosterone. Vitamins and hormones 7 30029738
2010 Structural aspects of the p.P222Q homozygous mutation of HSD3B2 gene in a patient with congenital adrenal hyperplasia. Arquivos brasileiros de endocrinologia e metabologia 7 21340167
2020 Late diagnosis of 3β-Hydroxysteroid dehydrogenase deficiency: the pivotal role of gas chromatography-mass spectrometry urinary steroid metabolome analysis and a novel homozygous nonsense mutation in the HSD3B2 gene. Journal of pediatric endocrinology & metabolism : JPEM 6 33180036
2017 Hsd3b2 associated in modulating steroid hormone synthesis pathway regulates the differentiation of chicken embryonic stem cells into spermatogonial stem cells. Journal of cellular biochemistry 6 28703914
2014 [A novel homozygous mutation p.E25X in the HSD3B2 gene causing salt wasting 3β-hydroxysteroid dehydrogenases deficiency in a Chinese pubertal girl: a delayed diagnosis until recurrent ovary cysts]. Zhonghua er ke za zhi = Chinese journal of pediatrics 6 25619355
2004 YY1 binding within the human HSD3B2 gene intron 1 is required for maximal basal promoter activity: identification of YY1 as the 3beta1-A factor. Journal of molecular endocrinology 6 15291746
2018 Up regulation of the steroid hormone synthesis regulator HSD3B2 is linked to early PSA recurrence in prostate cancer. Experimental and molecular pathology 5 29803408
2016 Non-Virilizing Congenital Adrenal Hyperplasia in a Female Patient with a Novel HSD3B2 Mutation. Sexual development : genetics, molecular biology, evolution, endocrinology, embryology, and pathology of sex determination and differentiation 5 27626911
2024 Immunohistochemical expression of CYP11A1, CYP11B, CYP17, and HSD3B2 in functional and nonfunctional canine adrenocortical tumors. Journal of veterinary internal medicine 4 39387578
2020 Co-Existence of Congenital Adrenal Hyperplasia and Bartter Syndrome due to Maternal Uniparental Isodisomy of HSD3B2 and CLCNKB Mutations. Hormone research in paediatrics 4 32506065
2023 Identification of a novel candidate HSD3B2 gene variant for familial hypospadias by whole-exome sequencing. Frontiers in genetics 3 37384334
2025 Ambiguous Genitalia Due to 3β-Hydroxysteroid Dehydrogenase Type 2 Deficiency: Clinical, Genetic, and Functional Characterization of Two Novel HSD3B2 Variants. JCEM case reports 2 39839754
2023 High carrier frequency of a nonsense p.Trp230* variant in HSD3B2 gene in Ossetians. Frontiers in endocrinology 2 37274334
2022 Co-Occurrence of a Pathogenic HSD3B2 Variant and a Duplication on 10q22.3-q23.2 Detected in Newborn Twins with Salt-Wasting Congenital Adrenal Hyperplasia. Genes 2 36553457
2016 DNA methylation is not involved in specific down-regulation of HSD3B2, NR4A1 and RARB genes in androgen-secreting cells of human adrenal cortex. Molecular and cellular endocrinology 2 27670690

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