Affinage

HPSE

Heparanase · UniProt Q9Y251

Length
543 aa
Mass
61.1 kDa
Annotated
2026-06-10
100 papers in source corpus 6 papers cited in narrative 6 extracted findings
Cross-family judge vs UniProt: UniProt preferred faithfulness: 4/4 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

HPSE (heparanase) is an endo-glucuronidase whose cleavage of heparan sulfate chains on extracellular matrix proteoglycans liberates ECM-sequestered factors and drives invasion, angiogenesis, and tissue remodeling (PMID:27347307). In the lung, HMGB1 signaling through RAGE activates NF-κB, which binds the HPSE promoter to induce transcription; the resulting heparanase cleaves heparan sulfate on myofibroblast ECM to release latent TGF-β and promote bronchiolitis obliterans syndrome (PMID:27347307). Beyond matrix degradation, HPSE acts as an upstream driver of tumor cell adhesion, migration, and invasion by upregulating the chemokines IL-8 and CXCL1 in a manner correlated with p38, JNK, and ERK1/2 MAPK activation (PMID:22719918), and its expression is post-transcriptionally restrained by miR-503-3p, an axis through which suppression of HPSE inhibits osteoclast differentiation (PMID:34592492). Lower-confidence findings additionally link HPSE to autophagy-associated chemotherapy resistance (PMID:26571129) and to early corneal neovascularization (PMID:20958185).

Mechanistic history

Synthesis pass · year-by-year structured walk · 6 steps
  1. 2009 Low

    Addressed whether HPSE expression is genetically controlled, finding common SNPs that regulate heparanase at multiple levels and revealing a disconnect between mRNA and circulating protein.

    Evidence SNP genotyping with haplotype analysis, RT-PCR and plasma ELISA in a healthy cohort

    PMID:19406828

    Open questions at the time
    • Association only, no direct functional manipulation
    • Mechanism of the inverse mRNA/protein correlation (secretion vs translation) unresolved
    • Single small population cohort
  2. 2010 Low

    Tested whether HPSE acts before angiogenesis, showing it appears prior to vessel ingrowth across diverse corneal injury models and positioning it as a pioneer factor for neovascularization.

    Evidence Immunohistochemistry and double immunofluorescence with temporal analysis in five mouse corneal neovascularization models

    PMID:20958185

    Open questions at the time
    • Correlative localization without HPSE loss/gain of function
    • Does not establish causality for vessel growth
    • Mechanism linking HPSE to endothelial recruitment unaddressed
  3. 2012 Medium

    Placed HPSE upstream of chemokine-driven invasion, showing it controls IL-8 and CXCL1 expression in correlation with MAPK signaling rather than acting solely through matrix degradation.

    Evidence Artificial miRNA knockdown with rescue, in vitro invasion/migration and xenograft assays, MAPK phosphorylation Western blot in melanoma cells

    PMID:22719918

    Open questions at the time
    • Causal link between MAPK activation and chemokine induction is correlative
    • Whether enzymatic activity is required for chemokine regulation not resolved
    • Single cancer cell type
  4. 2015 Low

    Proposed a non-canonical, intracellular role for HPSE in modulating autophagy to confer growth advantage and chemoresistance, distinct from its ECM-degrading function.

    Evidence Cell-based autophagy assays with HPSE gain/loss of function in normal and cancer cell lines

    PMID:26571129

    Open questions at the time
    • Methodological detail limited to summary-level
    • Molecular mechanism connecting HPSE to autophagy machinery undefined
    • Not independently confirmed
  5. 2016 Medium

    Dissected the transcriptional circuit driving HPSE in tissue remodeling, establishing the HMGB1/RAGE/NF-κB axis as inducer and latent TGF-β release as a key downstream consequence.

    Evidence Mouse tracheal transplant BOS model with HMGB1 blockade and HPSE inhibition, NF-κB promoter binding assay, TGF-β release assay

    PMID:27347307

    Open questions at the time
    • Direct NF-κB occupancy of the HPSE promoter shown by binding assay but not by genetic dissection of the site
    • Generalizability beyond the BOS model untested
    • Single lab
  6. 2021 Medium

    Identified a post-transcriptional brake on HPSE, showing osteoblast exosome-delivered miR-503-3p directly targets HPSE mRNA to suppress osteoclast differentiation.

    Evidence Exosome isolation, miRNA target validation, miR-503-3p and Hpse gain/loss of function, osteoclast differentiation assays

    PMID:34592492

    Open questions at the time
    • Whether HPSE enzymatic activity drives osteoclastogenesis not addressed
    • Direct miR-503-3p binding to HPSE 3'UTR confirmation context limited
    • Single lab

Open questions

Synthesis pass · forward-looking unresolved questions
  • How HPSE's enzymatic heparan sulfate cleavage is mechanistically coupled to its intracellular signaling roles (MAPK/chemokine induction, autophagy) remains unresolved.
  • No structural or catalytic dissection distinguishing enzymatic vs non-enzymatic functions in the corpus
  • Direct substrates beyond ECM heparan sulfate not enumerated
  • Mechanism linking HS cleavage to signaling output undefined

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0016787 hydrolase activity 1 GO:0140098 catalytic activity, acting on RNA 1
Localization
GO:0005576 extracellular region 1
Pathway
R-HSA-162582 Signal Transduction 2 R-HSA-1474244 Extracellular matrix organization 1

Evidence

Reading pass · 6 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2012 Knockdown of HPSE (heparanase) in melanoma cells using artificial miRNA reduced adhesion, migration, and invasion in vitro and in vivo, and suppressed expression of chemokines IL-8 and CXCL1 at both mRNA and protein levels. The downstream effect was correlated with reduced MAPK phosphorylation (p38 MAPK, JNK, ERK1/2), and could be rescued by re-expression of miRNA-incompatible HPSE cDNA, establishing HPSE as an upstream regulator of chemokine expression via MAPK signaling. Artificial miRNA knockdown, in vitro invasion/migration assays, in vivo xenograft, Western blot for MAPK phosphorylation, rescue experiment with mutant HPSE cDNA PloS one Medium 22719918
2016 HMGB1 activates HPSE expression through its receptor RAGE, which activates NF-κB that binds to the HPSE promoter to drive transcription. The resulting elevated HPSE then cleaves heparan sulfate chains on myofibroblast ECM to release latent TGF-β, promoting bronchiolitis obliterans syndrome (BOS). Blockade of HMGB1 alone or combined with HPSE attenuated BOS development in a mouse tracheal transplant model. Mouse tracheal transplantation model, HMGB1 blockade, HPSE inhibition, promoter binding assay for NF-κB on HPSE promoter, TGF-β release assay from ECM American journal of translational research Medium 27347307
2015 HPSE (heparanase) modulates autophagy in normal and malignant cells, conferring growth advantages and resistance to chemotherapy. This establishes a non-ECM-degradation role for heparanase in regulating intracellular autophagy pathways. Cell-based autophagy assays in normal and cancer cell lines with HPSE modulation (gain/loss of function) Autophagy Low 26571129
2021 Osteoblast-derived exosomes transfer miR-503-3p to osteoclast progenitor cells, where miR-503-3p directly targets HPSE (heparanase) mRNA to suppress its expression, thereby inhibiting osteoclast differentiation. Knockdown of Hpse phenocopied the inhibitory effect of miR-503-3p on osteoclastogenesis. Exosome isolation (TEM, NTA, Western blot), miRNA target validation, gain/loss-of-function of miR-503-3p and Hpse, osteoclast differentiation assay Acta histochemica Medium 34592492
2009 HPSE gene SNPs rs4693608 and rs4364254 regulate heparanase expression at both mRNA and plasma protein levels, with an unexpected inverse correlation: low-risk genotype combinations associated with low mRNA but high plasma heparanase protein, and high-risk genotypes with high mRNA but low plasma protein, suggesting regulation at multiple levels (transcriptional and post-transcriptional/secretion). SNP genotyping of 11 HPSE SNPs in 108 healthy individuals, haplotype analysis, real-time RT-PCR for mRNA, ELISA for plasma protein Journal of leukocyte biology Low 19406828
2010 HPSE expression precedes corneal neovascularization (detectable on day 1, before vessel ingrowth on day 3) across five different etiological models of corneal injury (alkaline burn, fungal infection, suturing, immunogen implantation, tumor implantation), suggesting HPSE acts as a pioneer factor enabling neovascular growth in the corneal stroma. Immunohistochemistry and double immunofluorescence staining in five mouse corneal neovascularization models; temporal co-expression analysis with MMP-2, MMP-9, and FAP Current eye research Low 20958185

Source papers

Stage 0 corpus · 100 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2016 HPA axis in major depression: cortisol, clinical symptomatology and genetic variation predict cognition. Molecular psychiatry 690 27528460
2005 On the interactions of the hypothalamic-pituitary-adrenal (HPA) axis and sleep: normal HPA axis activity and circadian rhythm, exemplary sleep disorders. The Journal of clinical endocrinology and metabolism 684 15728214
2012 Glucocorticoid regulation of inflammation and its functional correlates: from HPA axis to glucocorticoid receptor dysfunction. Annals of the New York Academy of Sciences 534 22823394
2014 The HPA - Immune Axis and the Immunomodulatory Actions of Glucocorticoids in the Brain. Frontiers in immunology 339 24744759
2010 Interactions of the circadian CLOCK system and the HPA axis. Trends in endocrinology and metabolism: TEM 315 20106676
2018 Role of glucocorticoid negative feedback in the regulation of HPA axis pulsatility. Stress (Amsterdam, Netherlands) 303 29764284
2016 A users guide to HPA axis research. Physiology & behavior 302 27871862
2021 HPA Axis in the Pathomechanism of Depression and Schizophrenia: New Therapeutic Strategies Based on Its Participation. Brain sciences 296 34679364
2020 The Role of Early Life Stress in HPA Axis and Anxiety. Advances in experimental medicine and biology 279 32002927
2015 The HPA axis in bipolar disorder: Systematic review and meta-analysis. Psychoneuroendocrinology 266 26547798
2006 Differential expression of HPA axis homolog in the skin. Molecular and cellular endocrinology 232 17197073
2005 The HPA and immune axes in stress: the involvement of the serotonergic system. European psychiatry : the journal of the Association of European Psychiatrists 222 16459240
2001 The fetal placental hypothalamic-pituitary-adrenal (HPA) axis, parturition and post natal health. Molecular and cellular endocrinology 208 11738803
2019 Is the HPA Axis as Target for Depression Outdated, or Is There a New Hope? Frontiers in psychiatry 189 30890970
2015 Ovarian hormone fluctuation, neurosteroids, and HPA axis dysregulation in perimenopausal depression: a novel heuristic model. The American journal of psychiatry 189 25585035
2012 Mineralocorticoid and glucocorticoid receptor balance in control of HPA axis and behaviour. Psychoneuroendocrinology 183 22980941
2013 Stress in adolescence and drugs of abuse in rodent models: role of dopamine, CRF, and HPA axis. Psychopharmacology 179 24370534
2003 Vps27-Hse1 and ESCRT-I complexes cooperate to increase efficiency of sorting ubiquitinated proteins at the endosome. The Journal of cell biology 166 14581452
2013 Early-life stress and HPA axis trigger recurrent adulthood depression. Epilepsy & behavior : E&B 163 24269030
2020 Pharmacological Treatment of Anxiety Disorders: The Role of the HPA Axis. Frontiers in psychiatry 147 32499732
2011 Gene × environment vulnerability factors for PTSD: the HPA-axis. Neuropharmacology 140 21439305
2018 Endocannabinoid system, stress and HPA axis. European journal of pharmacology 131 30036537
2002 Minireview: Neuro-immuno-endocrine modulation of the hypothalamic-pituitary-adrenal (HPA) axis by gp130 signaling molecules. Endocrinology 128 11956136
2020 Brain mechanisms of HPA axis regulation: neurocircuitry and feedback in context Richard Kvetnansky lecture. Stress (Amsterdam, Netherlands) 116 33345670
2009 Single nucleotide polymorphisms related to HPA axis reactivity. Neuroimmunomodulation 113 19571595
1998 Mouse interleukin-6 stimulates the HPA axis and increases brain tryptophan and serotonin metabolism. Neurochemistry international 108 9761458
2020 Linking the hemodynamic consequences of adverse childhood experiences to an altered HPA axis and acute stress response. Brain, behavior, and immunity 104 33358983
2019 A Tilted Axis: Maladaptive Inflammation and HPA Axis Dysfunction Contribute to Consequences of TBI. Frontiers in neurology 104 31068886
2013 HPA axis genetic variation, cortisol and psychosis in major depression. Molecular psychiatry 102 24166410
2003 Diabetes and the hypothalamo-pituitary-adrenal (HPA) axis. Minerva endocrinologica 101 12717340
2019 Childhood trauma, HPA axis activity and antidepressant response in patients with depression. Brain, behavior, and immunity 99 31794798
2011 Epigenetic programming of the HPA axis: early life decides. Stress (Amsterdam, Netherlands) 98 21854166
2000 The cytokine-HPA axis feed-back circuit. Zeitschrift fur Rheumatologie 97 11155800
2017 Blunted HPA axis activity prior to suicide attempt and increased inflammation in attempters. Psychoneuroendocrinology 96 28135675
2022 The etiology of poststroke-depression: a hypothesis involving HPA axis. Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 93 35643064
2018 HPSE enhancer RNA promotes cancer progression through driving chromatin looping and regulating hnRNPU/p300/EGR1/HPSE axis. Oncogene 93 29511351
2017 Discrimination and the HPA axis: current evidence and future directions. Journal of behavioral medicine 93 28155003
2000 The involvement of Helix pomatia lectin (HPA) binding N-acetylgalactosamine glycans in cancer progression. Histology and histopathology 91 10668205
2019 Depression and sleep: what has the treatment research revealed and could the HPA axis be a potential mechanism? Current opinion in psychology 90 31962280
2021 Soporific effect of modified Suanzaoren Decoction on mice models of insomnia by regulating Orexin-A and HPA axis homeostasis. Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 82 34509822
2017 HPA-axis and inflammatory reactivity to acute stress is related with basal HPA-axis activity. Psychoneuroendocrinology 81 28209543
2014 The role of adrenal gland microenvironment in the HPA axis function and dysfunction during sepsis. Molecular and cellular endocrinology 81 25543020
2024 The HPA Axis as Target for Depression. Current neuropharmacology 79 37581323
2017 Association between Stress and the HPA Axis in the Atopic Dermatitis. International journal of molecular sciences 75 29023418
2015 Identification and characterization of HPA-axis reactivity endophenotypes in a cohort of female PTSD patients. Psychoneuroendocrinology 75 25745955
2022 New Insights into the Role of Insulin and Hypothalamic-Pituitary-Adrenal (HPA) Axis in the Metabolic Syndrome. International journal of molecular sciences 65 35897752
2006 Hse1, a component of the yeast Hrs-STAM ubiquitin-sorting complex, associates with ubiquitin peptidases and a ligase to control sorting efficiency into multivesicular bodies. Molecular biology of the cell 65 17079730
2015 HPA AXIS RELATED GENES AND RESPONSE TO PSYCHOLOGICAL THERAPIES: GENETICS AND EPIGENETICS. Depression and anxiety 64 26647360
2007 The Vps27/Hse1 complex is a GAT domain-based scaffold for ubiquitin-dependent sorting. Developmental cell 63 17543868
2007 HPA-axis activity in alcoholism: examples for a gene-environment interaction. Addiction biology 62 17910738
2013 Epigenomic Mechanisms of Early Adversity and HPA Dysfunction: Considerations for PTSD Research. Frontiers in psychiatry 60 24133457
2006 Mice with mutations in the HPA-system as models for symptoms of depression. Biological psychiatry 57 16581037
2019 Developmental programming of the HPA axis and related behaviours: epigenetic mechanisms. The Journal of endocrinology 56 30917340
2000 Fetal hypothalamic-pituitary adrenal (HPA) development and activation as a determinant of the timing of birth, and of postnatal disease. Endocrine research 53 11196419
2012 An artificial miRNA against HPSE suppresses melanoma invasion properties, correlating with a down-regulation of chemokines and MAPK phosphorylation. PloS one 51 22719918
2006 Neuroregulation of the hypothalamus-pituitary-adrenal (HPA) axis in humans: effects of GABA-, mineralocorticoid-, and GH-Secretagogue-receptor modulation. TheScientificWorldJournal 50 16432622
2010 Genetic variations in the heparanase gene (HPSE) associate with increased risk of GVHD following allogeneic stem cell transplantation: effect of discrepancy between recipients and donors. Blood 46 20075159
2020 Gut microbiota modulates stress-induced hypertension through the HPA axis. Brain research bulletin 45 32535221
2000 Prostate-specific transcription factor hPSE is translated only in normal prostate epithelial cells. Cancer research 45 10728697
2000 Neuropeptides and the hypothalamic-pituitary-adrenocortical (HPA) system: review of recent research strategies in depression. The world journal of biological psychiatry : the official journal of the World Federation of Societies of Biological Psychiatry 45 12607206
2015 Glucocorticoid receptor gene methylation and HPA-axis regulation in adolescents. The TRAILS study. Psychoneuroendocrinology 44 25951242
2011 Immune function and HPA axis activity in free-ranging rhesus macaques. Physiology & behavior 43 21635909
2010 Mineralocorticoid receptor gene variants as determinants of HPA axis regulation and behavior. Endocrine development 43 21164267
2021 Osteoblasts-derived exosomes regulate osteoclast differentiation through miR-503-3p/Hpse axis. Acta histochemica 42 34592492
2019 Rhythmicity matters: Circadian and ultradian patterns of HPA axis activity. Molecular and cellular endocrinology 41 31738971
2015 Age of Trauma Onset and HPA Axis Dysregulation Among Trauma-Exposed Youth. Journal of traumatic stress 41 26556544
2018 Positive and negative social support and HPA-axis hyperactivity: Evidence from glucocorticoids in human hair. Psychoneuroendocrinology 40 29929086
2010 Genetics of HPA-axis, depression and suicidality. European psychiatry : the journal of the Association of European Psychiatrists 40 20444578
2007 Association of heparanase gene (HPSE) single nucleotide polymorphisms with hematological malignancies. Leukemia 39 17611567
2016 Stressing diabetes? The hidden links between insulinotropic peptides and the HPA axis. The Journal of endocrinology 37 27325244
2021 Stress impairs response to antidepressants via HPA axis and immune system activation. Brain, behavior, and immunity 36 33422640
2018 Childhood trauma dependent anxious depression sensitizes HPA axis function. Psychoneuroendocrinology 36 30086534
2016 HMGB1 exacerbates bronchiolitis obliterans syndrome via RAGE/NF-κB/HPSE signaling to enhance latent TGF-β release from ECM. American journal of translational research 36 27347307
2022 Single-Cell Sequencing Analysis and Multiple Machine Learning Methods Identified G0S2 and HPSE as Novel Biomarkers for Abdominal Aortic Aneurysm. Frontiers in immunology 35 35769488
2019 HPA-axis multilocus genetic variation moderates associations between environmental stress and depressive symptoms among adolescents. Development and psychopathology 35 30394263
2014 Allopregnanolone modulation of HPA axis function in the adult rat. Psychopharmacology 35 24658404
2019 Gene-environment interactions between HPA-axis genes and stressful life events in depression: a systematic review. Acta neuropsychiatrica 34 31106715
2016 Neuroendocrinological and Epigenetic Mechanisms Subserving Autonomic Imbalance and HPA Dysfunction in the Metabolic Syndrome. Frontiers in neuroscience 33 27147943
2015 Function from within: Autophagy induction by HPSE/heparanase--new possibilities for intervention. Autophagy 33 26571129
2016 HPA axis dysregulation, NR3C1 polymorphisms and glucocorticoid receptor isoforms imbalance in metabolic syndrome. Diabetes/metabolism research and reviews 32 27507764
2011 Effects of kisspeptin on parameters of the HPA axis. Endocrine 32 21387128
2020 Harsh Parenting Predicts Novel HPA Receptor Gene Methylation and NR3C1 Methylation Predicts Cortisol Daily Slope in Middle Childhood. Cellular and molecular neurobiology 30 32472381
2008 HPA-1a alloantibodies reduce endothelial cell spreading and monolayer integrity. Molecular immunology 30 19038456
2004 Ghrelin, hypothalamus-pituitary-adrenal (HPA) axis and Cushing's syndrome. Pituitary 30 16132204
2017 NPFFR2 Activates the HPA Axis and Induces Anxiogenic Effects in Rodents. International journal of molecular sciences 28 28825666
2010 Expression of MMP, HPSE, and FAP in stroma promoted corneal neovascularization induced by different etiological factors. Current eye research 26 20958185
2022 Prenatal stress modulates HPA axis homeostasis of offspring through dentate TERT independently of glucocorticoids receptor. Molecular psychiatry 25 36481932
2018 Role of HPA and the HPG Axis Interaction in Testosterone-Mediated Learned Helpless Behavior. Molecular neurobiology 25 29704202
2021 HPA axis dysregulation is associated with differential methylation of CpG-sites in related genes. Scientific reports 24 34635736
2020 Ethanol affects behavior and HPA axis activity during development in zebrafish larvae. Scientific reports 24 33293624
2019 Female HPA axis displays heightened sensitivity to pre-pubertal stress. Stress (Amsterdam, Netherlands) 23 31466501
2020 New effects of caffeine on corticotropin-releasing hormone (CRH)-induced stress along the intrafollicular classical hypothalamic-pituitary-adrenal (HPA) axis (CRH-R1/2, IP3 -R, ACTH, MC-R2) and the neurogenic non-HPA axis (substance P, p75NTR and TrkA) in ex vivo human male androgenetic scalp hair follicles. The British journal of dermatology 22 32271938
2018 Role of corticosterone in anxiety- and depressive-like behavior and HPA regulation following prenatal alcohol exposure. Progress in neuro-psychopharmacology & biological psychiatry 22 30367959
2016 Differentiation of Keratinocytes Modulates Skin HPA Analog. Journal of cellular physiology 22 27061711
2008 Polymorphisms of the human platelet alloantigens HPA-1, HPA-2, HPA-3, and HPA-4 in ischemic stroke. American journal of hematology 22 18383324
2025 Chronic Stress and Autoimmunity: The Role of HPA Axis and Cortisol Dysregulation. International journal of molecular sciences 21 41155288
2019 HLA-DRB3*01:01 exhibits a dose-dependent impact on HPA-1a antibody levels in HPA-1a-immunized women. Blood advances 21 30923048
2017 Circadian and ultradian patterns of HPA-axis activity in rodents: Significance for brain functionality. Best practice & research. Clinical endocrinology & metabolism 20 29223280
2009 Inverse correlation between HPSE gene single nucleotide polymorphisms and heparanase expression: possibility of multiple levels of heparanase regulation. Journal of leukocyte biology 20 19406828
2002 Gene frequencies of the HPA-1 to HPA-8w platelet antigen alleles in Taiwanese, Indonesian, and Thai. Annals of hematology 20 12029532

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