Affinage

HCCS

Holocytochrome c-type synthase · UniProt P53701

Length
268 aa
Mass
30.6 kDa
Annotated
2026-06-10
100 papers in source corpus 5 papers cited in narrative 5 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 4/4 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

HCCS encodes a mitochondrial holocytochrome c-type synthetase that catalyzes the covalent attachment of heme to c-type cytochromes, the maturation step required for a functional respiratory chain (PMID:8661044). Its activity is essential in mammals: ubiquitous deletion of mouse Hccs causes early embryonic lethality that is rescued by a human HCCS transgene, and loss underlies the male-lethal X-linked microphthalmia with linear skin defects (MLS) syndrome (PMID:12444108). The disease-associated missense mutation p.E159K abolishes enzymatic function—failing to complement respiratory growth in CYC3-deleted yeast—while leaving mitochondrial targeting of the protein intact, defining MLS as a loss of catalytic activity rather than mislocalization (PMID:17893649). Mechanistically, HCCS loss impairs the respiratory chain and drives reactive oxygen species overproduction, triggering a non-canonical, apoptosome-independent caspase-9 activation that produces excess cell death in developing brain and eye tissue and accounts for the MLS phenotype (PMID:23239471).

Mechanistic history

Synthesis pass · year-by-year structured walk · 5 steps
  1. 1996 Medium

    Established the molecular identity of HCCS as the first mammalian holocytochrome c-type synthetase and placed it in the MLS critical region, framing a candidate enzyme for c-type cytochrome heme attachment.

    Evidence cross-species conservation cloning, cDNA sequencing, Northern analysis, and homology to known holocytochrome c-type synthetases

    PMID:8661044

    Open questions at the time
    • Enzymatic activity inferred from homology, not measured directly
    • No demonstration of in vivo requirement at this stage
  2. 2002 High

    Demonstrated that HCCS is genetically essential and causal for MLS male lethality, resolving whether the gene is merely a positional candidate or functionally required.

    Evidence mouse conditional knockout with embryonic lethality rescued by a human HCCS transgenic BAC

    PMID:12444108

    Open questions at the time
    • Does not define the downstream cellular mechanism of lethality
    • Tissue-specific contributions to the MLS phenotype not dissected
  3. 2002 Medium

    Linked HCCS to the intrinsic apoptotic pathway by showing overexpression induces cytochrome c release and caspase-9/caspase-3 activation, connecting it to mitochondrial cell-death control.

    Evidence overexpression in HeLa cells with viability, cytochrome c release, caspase activity, and annexin V/PI assays

    PMID:11857354

    Open questions at the time
    • Overexpression phenotype may not reflect endogenous function
    • Gene identity as canonical HCCS flagged for caution
    • Single lab
  4. 2007 High

    Defined the molecular consequence of a disease mutation, separating loss of catalytic activity from protein mislocalization as the basis of MLS.

    Evidence yeast CYC3-complementation assay on non-fermentable carbon source plus immunofluorescence localization of mutant protein in CHO-K1 cells

    PMID:17893649

    Open questions at the time
    • Does not resolve the structural basis of the catalytic defect
    • Single mutation analyzed
  5. 2013 High

    Connected HCCS loss to a specific death pathway, showing respiratory impairment and ROS drive a non-canonical apoptosome-independent caspase-9 activation that explains the developmental MLS phenotype.

    Evidence medaka hccs knockdown with caspase-9 activation, ROS measurement, and apoptosis assays in brain and eye

    PMID:23239471

    Open questions at the time
    • Molecular machinery of the apoptosome-independent caspase-9 activation not defined
    • Direct linkage between heme-attachment defect and ROS not biochemically reconstituted

Open questions

Synthesis pass · forward-looking unresolved questions
  • How the heme-attachment chemistry is catalyzed at the molecular and structural level, and the precise composition of the non-canonical caspase-9 activation machinery, remain unresolved.
  • No structural model of the synthetase or its substrate complex
  • Components mediating apoptosome-independent caspase-9 activation unidentified

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0016740 transferase activity 2 GO:0140096 catalytic activity, acting on a protein 1
Localization
GO:0005739 mitochondrion 2
Pathway
R-HSA-1643685 Disease 3 R-HSA-5357801 Programmed Cell Death 2

Evidence

Reading pass · 5 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1996 HCCS encodes a putative human holocytochrome c-type synthetase that catalyzes the covalent addition of a heme group onto c-type cytochromes in the mitochondria; the gene maps to the MLS critical region on Xp22 and is the first mammalian holocytochrome c-type synthetase described. Cross-species conservation cloning, cDNA sequencing, Northern analysis, sequence homology to known holocytochrome c-type synthetases Genomics Medium 8661044
2002 Loss of HCCS (holocytochrome c-type synthetase) causes male lethality of MLS syndrome; ubiquitous deletion of mouse Hccs leads to early embryonic lethality in hemizygous, homozygous, and heterozygous embryos, rescued by a human HCCS transgenic BAC, establishing HCCS as essential for mitochondrial respiratory chain function. Mouse conditional knockout, transgenic BAC rescue, in vivo embryonic lethality assay Human molecular genetics High 12444108
2007 The HCCS missense mutation p.E159K abolishes the enzymatic function of HCCS (loss-of-function), while the mutant protein retains correct mitochondrial targeting; functional loss was demonstrated by failure to complement respiratory growth in CYC3-deleted yeast. Direct sequencing, immunofluorescence/confocal microscopy for subcellular localization in CHO-K1 cells, yeast complementation assay on non-fermentable carbon source Molecular vision High 17893649
2013 Downregulation of hccs in medaka fish causes increased cell death in brain and eyes via a non-canonical, apoptosome-independent caspase-9 activation triggered by mitochondrial respiratory chain impairment and overproduction of reactive oxygen species; this mechanism explains the MLS developmental phenotype. Medaka hccs knockdown model, caspase-9 activation assays, ROS measurement, apoptosis assays EMBO molecular medicine High 23239471
2002 HCCS-1 (HCCS) overexpression in HeLa cervical cancer cells inhibits growth (~50%), induces apoptosis with cytochrome c release from mitochondria, and activates caspase-9 and caspase-3, leading to PARP cleavage; HCCS-1-transfected cells showed increased sensitivity to adriamycin and UVC-triggered apoptosis. Transfection/overexpression in HeLa cells, cell viability assay, cytochrome c release assay, caspase activity assay, annexin V/PI flow cytometry International journal of cancer Medium 11857354

Source papers

Stage 0 corpus · 100 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
1988 Self-tolerance eliminates T cells specific for Mls-modified products of the major histocompatibility complex. Nature 1251 3126396
1989 Clonal anergy induced in mature V beta 6+ T lymphocytes on immunizing Mls-1b mice with Mls-1a expressing cells. Nature 567 2525232
1991 Linkage of Mls genes to endogenous mammary tumour viruses of inbred mice. Nature 385 1846948
1991 Mls--a retrovirus exploits the immune system. Immunology today 255 1659830
1990 A role for clonal inactivation in T cell tolerance to Mls-1a. Nature 203 1971916
1989 The T cell receptor V beta 6 domain imparts reactivity to the Mls-1a antigen. Cellular immunology 187 2522825
1992 An exogenous mouse mammary tumor virus with properties of Mls-1a (Mtv-7). The Journal of experimental medicine 155 1316932
1989 A third T-cell receptor beta-chain variable region gene encodes reactivity to Mls-1a gene products. Proceedings of the National Academy of Sciences of the United States of America 140 2474831
2012 Methylome analysis and integrative profiling of human HCCs identify novel protumorigenic factors. Hepatology (Baltimore, Md.) 130 22689435
1991 Requirement of dendritic cells and B cells in the clonal deletion of Mls-reactive T cells in the thymus. The Journal of experimental medicine 125 1900074
2011 Transcriptional regulation of miR-224 upregulated in human HCCs by NFκB inflammatory pathways. Journal of hepatology 113 22178270
1992 Mls-1 is encoded by the long terminal repeat open reading frame of the mouse mammary tumor provirus Mtv-7. Proceedings of the National Academy of Sciences of the United States of America 112 1319061
1991 Analysis of the interaction site for the self superantigen Mls-1a on T cell receptor V beta. The Journal of experimental medicine 112 1902503
2012 Human superoxide dismutase 1 (hSOD1) maturation through interaction with human copper chaperone for SOD1 (hCCS). Proceedings of the National Academy of Sciences of the United States of America 107 22869735
1992 Detection and biochemical characterization of the mouse mammary tumor virus 7 superantigen (Mls-1a). Cell 107 1330323
1985 The immunobiology of the T cell response to Mls-locus-disparate stimulator cells. I. Unidirectionality, new strain combinations, and the role of Ia antigens. Journal of immunology (Baltimore, Md. : 1950) 106 2579125
1992 T cell receptor alpha-chain influences reactivity to Mls-1 in V beta 8.1 transgenic mice. Journal of immunology (Baltimore, Md. : 1950) 96 1321853
2008 mls-2 and vab-3 Control glia development, hlh-17/Olig expression and glia-dependent neurite extension in C. elegans. Development (Cambridge, England) 90 18508862
1989 Relative V beta transcript levels in thymus and peripheral lymphoid tissues from various mouse strains. Inverse correlation of I-E and Mls expression with relative abundance of several V beta transcripts in peripheral lymphoid tissues. The Journal of experimental medicine 88 2497226
2000 Mechanism of Cu,Zn-superoxide dismutase activation by the human metallochaperone hCCS. The Journal of biological chemistry 87 11018045
1999 Prevalence of resistance to MLS antibiotics in 20 European university hospitals participating in the European SENTRY surveillance programme. Sentry Participants Group. The Journal of antimicrobial chemotherapy 86 10404317
1994 Microphthalmia with linear skin defects (MLS) syndrome: clinical, cytogenetic, and molecular characterization. American journal of medical genetics 85 8116674
1983 Efficiency of antigen presentation differs in mice differing at the Mls locus. Nature 81 6226877
1985 T cell responses to Mls determinants are restricted by cross-reactive MHC determinants. Journal of immunology (Baltimore, Md. : 1950) 80 2579127
1991 A characteristic Mls-1a response precedes Mls-1a anergy in vivo. Journal of immunology (Baltimore, Md. : 1950) 76 1826014
1990 Activation of polyphosphoinositide hydrolysis in T cells by H-2 alloantigen but not MLS determinants. Science (New York, N.Y.) 74 2164711
1985 The immunobiology of T cell responses to Mls-locus-disparate stimulator cells. II. Effects of Mls-locus-disparate stimulator cells on cloned, protein antigen-specific, Ia-restricted T cell lines. Journal of immunology (Baltimore, Md. : 1950) 68 2579126
1989 Evidence that Mls-2 antigens which delete V beta 3+ T cells are controlled by multiple genes. Journal of immunology (Baltimore, Md. : 1950) 65 2496158
1987 Clonal analysis of the Mls system. A reappraisal of polymorphism and allelism among Mlsa, Mlsc, and Mlsd. The Journal of experimental medicine 65 2435833
2013 A specific cholesterol metabolic pathway is established in a subset of HCCs for tumor growth. Journal of molecular cell biology 63 24163426
1993 Major histocompatibility complex-specific recognition of Mls-1 is mediated by multiple elements of the T cell receptor. The Journal of experimental medicine 63 8381156
1990 Characterization of the ligand(s) responsible for negative selection of V beta 11- and V beta 12-expressing T cells: effects of a new Mls determinant. The Journal of experimental medicine 58 2388035
1982 MHC recognition by clones of Mls specific T-lymphocytes. Immunogenetics 58 6183199
1985 Molecular genetics of resistance to macrolides, lincosamides and streptogramin B (MLS) in streptococci. The Journal of antimicrobial chemotherapy 56 3932298
1996 Cloning and characterization of a putative human holocytochrome c-type synthetase gene (HCCS) isolated from the critical region for microphthalmia with linear skin defects (MLS). Genomics 54 8661044
1988 Analysis of specificity for antigen, Mls, and allogenic MHC by transfer of T-cell receptor alpha- and beta-chain genes. Nature 53 2849059
2003 Prevalence and association of macrolide-lincosamide-streptogramin B (MLS(B)) resistance with resistance to moxifloxacin in Clostridium difficile. The Journal of antimicrobial chemotherapy 52 12615860
1993 The genes for X-linked ocular albinism (OA1) and microphthalmia with linear skin defects (MLS): cloning and characterization of the critical regions. Human molecular genetics 52 8364577
2002 Loss of holocytochrome c-type synthetase causes the male lethality of X-linked dominant microphthalmia with linear skin defects (MLS) syndrome. Human molecular genetics 51 12444108
1983 Strong histocompatibility and cell-mediated cytotoxic effects of a single Mls difference demonstrated using a new congenic mouse strain. European journal of immunology 51 6221931
2002 The T-box factor MLS-1 acts as a molecular switch during specification of nonstriated muscle in C. elegans. Genes & development 46 11799068
1987 T cell recognition of Mls. T cell clones demonstrate polymorphism between Mlsa, Mlsc, and Mlsd. Journal of immunology (Baltimore, Md. : 1950) 46 2432122
1995 Transfer of macrolide-lincosamide-streptogramin B (MLS) resistance in Clostridium difficile is linked to a gene homologous with toxin A and is mediated by a conjugative transposon, Tn5398. The Journal of antimicrobial chemotherapy 45 7759394
2019 Molecular recognition and maturation of SOD1 by its evolutionarily destabilised cognate chaperone hCCS. PLoS biology 44 30735496
1987 Mls is not a single gene, allelic system. Different stimulatory Mls determinants are the products of at least two nonallelic, unlinked genes. The Journal of experimental medicine 44 3116144
1992 CD4 expression is differentially required for deletion of MLS-1a-reactive T cells. The Journal of experimental medicine 43 1402689
1999 Induction of ribosome methylation in MLS-resistant Streptococcus pneumoniae by macrolides and ketolides. Microbial drug resistance (Larchmont, N.Y.) 41 10566867
1988 An external stimulus that mimics Mls locus responses. Journal of immunogenetics 40 3148661
1987 Relationship of B cell Fc receptors to T cell recognition of Mls antigen. European journal of immunology 40 2960541
2013 The impairment of HCCS leads to MLS syndrome by activating a non-canonical cell death pathway in the brain and eyes. EMBO molecular medicine 37 23239471
2010 The HMX/NKX homeodomain protein MLS-2 specifies the identity of the AWC sensory neuron type via regulation of the ceh-36 Otx gene in C. elegans. Development (Cambridge, England) 37 20150279
2010 Development of chitosan-collagen hydrogel incorporated with lysostaphin (CCHL) burn dressing with anti-methicillin-resistant Staphylococcus aureus and promotion wound healing properties. Drug delivery 37 20726806
1992 Acquired Mls-1a-like clonal deletion in Mls-1b mice. The Journal of experimental medicine 35 1346271
2016 A faulty interaction between SOD1 and hCCS in neurodegenerative disease. Scientific reports 34 27282955
2002 Gonadotropin stimulation of MLS human epithelial ovarian carcinoma cells augments cell adhesion mediated by CD44 and by alpha(v)-integrin. Gynecologic oncology 33 11812090
1985 T cell receptors for responses to Mls determinants and allo-H-2 determinants appear to be encoded on different chromosomes. The Journal of experimental medicine 32 2578545
2014 Promoter methylation of MLH1, PMS2, MSH2 and p16 is a phenomenon of advanced-stage HCCs. PloS one 31 24400091
2009 Goltz-Gorlin (focal dermal hypoplasia) and the microphthalmia with linear skin defects (MLS) syndrome: no evidence of genetic overlap. European journal of human genetics : EJHG 31 19277062
2007 HCCS loss-of-function missense mutation in a female with bilateral microphthalmia and sclerocornea: a novel gene for severe ocular malformations? Molecular vision 31 17893649
1993 Influence of the T cell receptor alpha-chain on T cell reactivity and tolerance to Mls-1 in T cell receptor beta-chain transgenic mice. Journal of immunology (Baltimore, Md. : 1950) 31 8335899
1986 The immunobiology of T cell responses to Mls-locus-disparate stimulator cells. III. Helper and cytolytic functions of cloned, Mls-reactive T cell lines. Journal of immunology (Baltimore, Md. : 1950) 31 2933461
1993 Production and characterization of an Mls-1-specific monoclonal antibody. The Journal of experimental medicine 30 8381154
1993 Presentation of the Mls-1 superantigen by human HLA class II molecules to murine T cells. Journal of immunology (Baltimore, Md. : 1950) 30 8395548
1991 Transient T and B cell activation after neonatal induction of tolerance to MHC class II or Mls alloantigens. Journal of immunology (Baltimore, Md. : 1950) 30 1672344
1985 Ribosomal RNA methylation in Staphylococcus aureus and Escherichia coli: effect of the "MLS" (erythromycin resistance) methylase. Plasmid 30 3906713
1993 "Neuroendocrine" differentiation in hepatocellular carcinomas (HCCs): immunohistochemical reactivity is related to distinct tumor cell types, but not to tumor grade. Histology and histopathology 29 8305816
1990 Analysis of T cell receptor V beta gene usage in primary mixed lymphocyte reactions: evidence for directive usage by different antigen-presenting cells and Mls-like determinants on T cell blasts. European journal of immunology 29 2142455
2005 Microphthalmia with linear skin defects (MLS) syndrome: clinical, cytogenetic, and molecular characterization of 11 cases. American journal of medical genetics. Part A 28 16059943
1992 Thymic epithelium induces neither clonal deletion nor anergy to Mls 1a antigens. European journal of immunology 27 1534756
2014 Clinical spectrum of females with HCCS mutation: from no clinical signs to a neonatal lethal form of the microphthalmia with linear skin defects (MLS) syndrome. Orphanet journal of rare diseases 26 24735900
1985 In vivo treatment of neonatal mice with anti-I-A antibodies interferes with the development of the class I, class II, and Mls-reactive proliferating T cell subset. Journal of immunology (Baltimore, Md. : 1950) 26 3157745
1991 Role of Mls-1 locus and clonal deletion of T cells in susceptibility to collagen-induced arthritis in mice. Journal of immunology (Baltimore, Md. : 1950) 25 1907992
2014 The effect of near-infrared MLS laser radiation on cell membrane structure and radical generation. Lasers in medical science 24 24718669
1994 Transmission of an Mls-1a-like superantigen to BALB/c mice by foster-nursing on F1 Mls-1bxa mothers. Sex-influenced onset of clonal deletion. Journal of immunology (Baltimore, Md. : 1950) 24 7913941
1985 MLS-resistance determinants in Staphylococcus aureus and their molecular evolution. The Journal of antimicrobial chemotherapy 24 3932297
1984 Independent inhibition of IL 2 synthesis and cell proliferation by anti-Ia antibodies in mixed lymphocyte responses to Mls. European journal of immunology 24 6233154
2005 The HMX homeodomain protein MLS-2 regulates cleavage orientation, cell proliferation and cell fate specification in the C. elegans postembryonic mesoderm. Development (Cambridge, England) 23 16107479
2013 MLS-2384, a new 6-bromoindirubin derivative with dual JAK/Src kinase inhibitory activity, suppresses growth of diverse cancer cells. Cancer biology & therapy 22 24100507
1992 Expression of the Mls-1a superantigen results in an increased frequency of V beta 14+ T cells. Journal of immunology (Baltimore, Md. : 1950) 22 1323609
1991 Evidence for quantitative and qualitative differences in functional activation of Mls-reactive T cell clones and hybridomas by antigen or TcR/CD3 antibodies. European journal of immunology 22 1680703
1989 Macrolide-lincosamide-streptogramin B (MLS) resistance in cutaneous propionibacteria: definition of phenotypes. The Journal of antimicrobial chemotherapy 22 2501269
1991 Genetic analysis of the Mls system. Formal Mls typing of the commonly used inbred strains. Immunogenetics 21 1825308
1989 Growth and radiation sensitivity of the MLS human ovarian carcinoma cell line grown as multicellular spheroids and xenografted tumours. British journal of cancer 21 2757922
2013 Mechanistic aspects of hSOD1 maturation from the solution structure of Cu(I) -loaded hCCS domain 1 and analysis of disulfide-free hSOD1 mutants. Chembiochem : a European journal of chemical biology 20 23625804
1991 CD8+ T cell response to Mls-1a determinants involves major histocompatibility complex class II molecules. The Journal of experimental medicine 20 1825506
2021 Effect of NIR Laser Therapy by MLS-MiS Source on Fibroblast Activation by Inflammatory Cytokines in Relation to Wound Healing. Biomedicines 19 33809724
1983 Experimental immunologically mediated aplastic anemia (AA) in H-2k identical, Mls (M) locus different mice. Experimental hematology 19 6617789
2020 The novel and transferable erm(51) gene confers macrolides, lincosamides and streptogramins B (MLSB ) resistance to clonal Rhodococcus equi in the environment. Environmental microbiology 18 32291839
2018 MLSB-Resistant Staphylococcus aureus in Central Greece: Rate of Resistance and Molecular Characterization. Microbial drug resistance (Larchmont, N.Y.) 18 30403546
1992 Mls genes and self-superantigens. Trends in genetics : TIG 18 1332231
1990 Cloning of midecamycin(MLS)-resistance genes from Streptomyces mycarofaciens, Streptomyces lividans and Streptomyces coelicolor A3(2). The Journal of antibiotics 18 2211365
2020 Genetic Characterization of Methicillin-Resistant Staphylococcus aureus Isolates from Human Bloodstream Infections: Detection of MLSB Resistance. Antibiotics (Basel, Switzerland) 17 32635147
2002 Candidate tumor suppressor, HCCS-1, is downregulated in human cancers and induces apoptosis in cervical cancer. International journal of cancer 17 11857354
2002 Analysis of macrolide-lincosamide-streptogramin B (MLS(B)) resistance determinant in strains of Clostridium difficile. Microbial drug resistance (Larchmont, N.Y.) 17 12002649
2002 Microphthalmia with linear skin defects syndrome (MLS): a male with a mosaic paracentric inversion of Xp. Cytogenetic and genome research 17 12900578
1977 B-lymphocyte Fc receptor-associated non-H-2 antigens are determined by a single polymorphic locus which is linked to the Mls locus. The Journal of experimental medicine 17 303687
2018 Delta-like 3 is silenced by HBx via histone acetylation in HBV-associated HCCs. Scientific reports 16 29555949
2007 Mother and daughter with a terminal Xp deletion: implication of chromosomal mosaicism and X-inactivation in the high clinical variability of the microphthalmia with linear skin defects (MLS) syndrome. European journal of medical genetics 16 17845869
2000 Suppressor T cells regulate the nonanergic cell population that remains after peripheral tolerance is induced to the Mls-1 antigen in T cell receptor Vbeta 8.1 transgenic mice. Proceedings of the National Academy of Sciences of the United States of America 16 11069296
1995 Persistence of V beta 6+ T cells in Mls-1a mice. A role for the third complementarity-determining region (CDR3) of the T cell receptor beta chain in superantigen recognition. Journal of immunology (Baltimore, Md. : 1950) 16 7594572

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