Affinage

GGN

Gametogenetin · UniProt Q86UU5

Length
652 aa
Mass
66.7 kDa
Annotated
2026-06-10
61 papers in source corpus 4 papers cited in narrative 5 extracted findings
Cross-family judge faithfulness: 4/4 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

GGN (Gametogenetin) is a testis-enriched protein expressed in late pachytene spermatocytes and round spermatids that functions in DNA double-strand break repair during male meiosis (PMID:12574169, PMID:23451117). The Ggn locus produces three splice isoforms (GGN1, GGN2, GGN3) with distinct subcellular distributions—GGN1 at the nuclear membrane, GGN2 cytoplasmic, and GGN3 nuclear/nucleolar—and these isoforms regulate the subcellular localization of their interaction partner POG, redirecting it to the perinuclear region or nucleoli (PMID:12574169). GGN1, the largest isoform, physically associates with the Fanconi Anemia/BRCA DNA repair proteins FANCL, FANCD2, and BRCC36; complete loss of GGN in mice causes pre-implantation embryonic lethality, while heterozygous spermatocytes accumulate unrepaired meiotic DNA double-strand breaks, placing GGN within the FA/BRCA repair pathway (PMID:23451117). A homozygous truncating variant in human GGN was identified in a patient with globozoospermia, linking GGN loss-of-function to this spermatogenic defect (PMID:33108537).

Mechanistic history

Synthesis pass · year-by-year structured walk · 5 steps
  1. 2003 Medium

    Established GGN as a POG-interacting protein whose splice isoforms control POG subcellular localization, providing the first molecular handle on GGN function in germ cells.

    Evidence Yeast two-hybrid screening with co-expression localization assays in HeLa cells

    PMID:12574169

    Open questions at the time
    • Interaction shown in heterologous HeLa system, not in germ cells
    • Functional consequence of POG relocalization not defined
    • No structural basis for isoform-specific localization
  2. 2003 Medium

    Linked GGN expression to the timing of meiosis and to spermatogenesis downstream of POG, framing GGN as a germ-cell-stage-specific factor.

    Evidence Expression analysis in mouse testis combined with Pog-deficient mouse meiotic phenotype

    PMID:12574169

    Open questions at the time
    • Causal role of GGN itself in meiosis not directly tested here
    • Mechanism connecting POG to meiotic progression unknown
  3. 2013 High

    Defined a mechanistic role for GGN in meiotic DNA repair by showing GGN1 binds FA/BRCA pathway proteins and that GGN loss disrupts double-strand break repair and is embryonically essential.

    Evidence Co-immunoprecipitation from mouse testis, Ggn null mouse generation, and DSB-marker immunostaining in heterozygous pachytene spermatocytes

    PMID:23451117

    Open questions at the time
    • Embryonic lethality of nulls prevented direct assessment of meiotic phenotype in homozygotes
    • Biochemical step within the FA/BRCA pathway performed by GGN not defined
    • Whether interactions are direct vs. complex-mediated not resolved
  4. 2013 Low

    Connected GGN loss-of-function to a human spermatogenic disease phenotype, extending its germ-cell role to clinical infertility.

    Evidence Whole-exome sequencing of a globozoospermia cohort identifying a homozygous truncating variant in one patient

    PMID:33108537

    Open questions at the time
    • Single patient with no functional validation
    • Causality not established beyond genetic association
    • Mechanism linking GGN loss to acrosome failure unknown
  5. 2019 Low

    Raised a possible context-dependent role for GGN in cell survival signaling outside the germ line, in colorectal cancer cells.

    Evidence siRNA knockdown in CRC cell lines with proliferation, apoptosis, and p-Akt readouts

    PMID:30721393

    Open questions at the time
    • Single knockdown without rescue or mutagenesis to confirm specificity
    • Direct molecular link between GGN and PI3K/Akt not established
    • Relationship to germ-cell DNA repair role unclear

Open questions

Synthesis pass · forward-looking unresolved questions
  • The precise biochemical activity of GGN within the FA/BRCA repair pathway and the functional significance of its isoform-specific localizations remain undefined.
  • No enzymatic or structural activity assigned to GGN
  • Mechanism by which GGN promotes DSB repair unresolved
  • Whether POG and FA/BRCA interactions are part of one functional axis is unknown

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Localization
GO:0005635 nuclear envelope 1 GO:0005730 nucleolus 1 GO:0005829 cytosol 1
Pathway
R-HSA-1474165 Reproduction 2 R-HSA-73894 DNA Repair 1

Evidence

Reading pass · 5 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2003 GGN1 and GGN3, two proteins produced by alternate splicing of the Ggn (gametogenetin) gene, interact with POG (the product of the Pog gene) via yeast two-hybrid screening. The three GGN isoforms (GGN1, GGN2, GGN3) have distinct subcellular localizations: GGN1 along the nuclear membrane, GGN2 in the cytoplasm, and GGN3 in the nucleus/nucleoli. Co-expression of POG with GGN1 or GGN3 in HeLa cells redirected POG localization to the perinuclear region or nucleoli, respectively, demonstrating that GGN isoforms regulate POG subcellular localization. Yeast two-hybrid screening, subcellular localization by transfection/imaging in HeLa cells, co-expression experiments The Journal of biological chemistry Medium 12574169
2003 Ggn expression is confined to late pachytene spermatocytes and round spermatids, temporally coinciding with meiosis. POG-deficient mice show impaired meiosis, and Ggn/Pog co-expression in primary spermatocytes implicates GGN in spermatogenesis downstream of POG. Expression analysis in mouse testis; genetic loss-of-function (Pog-deficient mice) with meiotic phenotype readout The Journal of biological chemistry Medium 12574169
2013 GGN1 (the largest isoform) interacts with the DNA repair proteins FANCL, FANCD2, and BRCC36 in mouse testis, as demonstrated by co-immunoprecipitation. Complete loss of GGN (Ggn null mice) causes pre-implantation embryonic lethality with no viable blastocysts. Heterozygous Ggn knockout pachytene spermatocytes show an increased incidence of unrepaired DNA double-strand breaks (DSBs), placing GGN in the Fanconi Anemia/BRCA DNA repair pathway during male meiosis. Co-immunoprecipitation from mouse testis lysate; Ggn null mouse generation; immunostaining for DSB markers in pachytene spermatocytes of heterozygous knockouts; RT-PCR for Ggn expression in oocytes and pre-implantation embryos PloS one High 23451117
2013 A homozygous truncating variant in GGN was identified by whole-exome sequencing in one patient with globozoospermia (round-headed spermatozoa lacking an acrosome), confirming that loss-of-function of GGN can cause this spermatogenic defect in humans. Whole-exome sequencing in a cohort of 69 globozoospermia patients Human genetics Low 33108537
2019 Knockdown of GGN in colorectal cancer (CRC) cell lines inhibited cellular proliferation and promoted apoptosis, and was associated with reduced phospho-Akt levels, placing GGN upstream of the PI3K/Akt signaling pathway in this context. siRNA knockdown of GGN in CRC cell lines; proliferation and apoptosis assays; Western blotting for p-Akt Pathology oncology research : POR Low 30721393

Source papers

Stage 0 corpus · 61 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2000 Polymorphic CAG and GGN repeat lengths in the androgen receptor gene and prostate cancer risk: a population-based case-control study in China. Cancer research 239 11016637
1999 (CAG)nCAA and GGN repeats in the human androgen receptor gene are not associated with prostate cancer in a French-German population. European journal of human genetics : EJHG 114 10234512
2007 A case for "StopGo": reprogramming translation to augment codon meaning of GGN by promoting unconventional termination (Stop) after addition of glycine and then allowing continued translation (Go). RNA (New York, N.Y.) 100 17456564
2004 Linkage between cryptorchidism, hypospadias, and GGN repeat length in the androgen receptor gene. The Journal of clinical endocrinology and metabolism 98 15472213
2004 How strong is the association between CAG and GGN repeat length polymorphisms in the androgen receptor gene and prostate cancer risk? Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 93 15533905
1987 pen repeat sequences are GGN clusters and encode a glycine-rich domain in a Drosophila cDNA homologous to the rat helix destabilizing protein. Proceedings of the National Academy of Sciences of the United States of America 92 3031652
1998 The androgen receptor gene GGN microsatellite and prostate cancer risk. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 82 9610786
2006 Functional in vitro characterisation of the androgen receptor GGN polymorphism. Molecular and cellular endocrinology 57 17197074
2004 Androgen receptor gene GGN and CAG polymorphisms among severely oligozoospermic and azoospermic Swedish men. Human reproduction (Oxford, England) 52 15229204
2006 Association of long polyglycine tracts (GGN repeats) in exon 1 of the androgen receptor gene with cryptorchidism and penile hypospadias in Iranian patients. Journal of andrology 50 16957138
2003 No association between mutations in the human androgen receptor GGN repeat and inter-sex conditions. Molecular human reproduction 50 12802043
2008 The androgen receptor CAG and GGN repeat polymorphisms and prostate cancer susceptibility in African-American men: results from the Flint Men's Health Study. Journal of human genetics 44 18217192
2020 A 5' UTR GGN repeat controls localisation and translation of a potassium leak channel mRNA through G-quadruplex formation. Nucleic acids research 34 32870280
2003 Mouse GGN1 and GGN3, two germ cell-specific proteins from the single gene Ggn, interact with mouse POG and play a role in spermatogenesis. The Journal of biological chemistry 34 12574169
2006 Alleles with short CAG and GGN repeats in the androgen receptor gene are associated with benign endometrial cancer. International journal of cancer 32 16187285
2020 Genetic analyses of a large cohort of infertile patients with globozoospermia, DPY19L2 still the main actor, GGN confirmed as a guest player. Human genetics 30 33108537
2010 Androgen receptor gene CAG and GGN repeat polymorphisms in Chilean men with primary severe spermatogenic failure. Journal of andrology 28 20378930
2011 Association of androgen receptor gene, CAG and GGN repeat length polymorphism and impulsive-disinhibited personality traits in inmates: the role of short-long haplotype. Psychiatric genetics 27 21368712
2007 The two most common alleles of the coding GGN repeat in the androgen receptor gene cause differences in protein function. Journal of molecular endocrinology 27 17601880
2006 Androgen receptor gene GGN repeat length and reproductive characteristics in young Swedish men. European journal of endocrinology 27 16868150
1997 Codon-usage variants in the polymorphic (GGN)n trinucleotide repeat of the human androgen receptor gene. Human genetics 27 9385367
2008 Combination of short CAG and GGN repeats in the androgen receptor gene is associated with acne risk in North East China. Journal of the European Academy of Dermatology and Venereology : JEADV 26 18624843
2006 No association of androgen receptor GGN repeat length polymorphism with infertility in Indian men. Journal of andrology 24 16809273
2017 The number of CAG and GGN triplet repeats in the Androgen Receptor gene exert combinatorial effect on hormonal and sperm parameters in young men. Andrology 23 28334513
2007 Increased risk of breast cancer in women bearing a combination of large CAG and GGN repeats in the exon 1 of the androgen receptor gene. European journal of cancer (Oxford, England : 1990) 23 17728127
2008 Short alleles of both GGN and CAG repeats at the exon-1 of the androgen receptor gene are associated to increased PSA staining and a higher Gleason score in human prostatic cancer. The Journal of steroid biochemistry and molecular biology 21 19095061
2009 Small effect of the androgen receptor gene GGN repeat polymorphism on serum testosterone levels in healthy men. European journal of endocrinology 19 19383805
2016 Androgen Receptor (AR) Gene (CAG)n and (GGN)n Length Polymorphisms and Symptoms in Young Males With Long-Lasting Adverse Effects After Finasteride Use Against Androgenic Alopecia. Sexual medicine 18 28024997
2014 A pharmacogenetic survey of androgen receptor (CAG)n and (GGN)n polymorphisms in patients experiencing long term side effects after finasteride discontinuation. The International journal of biological markers 18 24855036
2012 Relationship of 2D:4D finger ratio with androgen receptor CAG and GGN repeat polymorphism. American journal of human biology : the official journal of the Human Biology Council 18 23132707
2010 Bone mass and the CAG and GGN androgen receptor polymorphisms in young men. PloS one 18 20634949
2011 Variation in CAG and GGN repeat lengths and CAG/GGN haplotype in androgen receptor gene polymorphism and prostate carcinoma in Nigerians. British journal of biomedical science 16 21950206
2009 Androgen receptor gene CAG and GGN polymorphisms in infertile Nigerian men. Journal of endocrinological investigation 16 20065623
2008 The GGN and CAG repeat polymorphisms in the exon-1 of the androgen receptor gene are, respectively, associated with insulin resistance in men and with dyslipidemia in women. The Journal of steroid biochemistry and molecular biology 16 19159685
2013 Baculovirus VP1054 is an acquired cellular PURα, a nucleic acid-binding protein specific for GGN repeats. Journal of virology 15 23720732
2006 Comparison of androgen receptor CAG and GGN repeat length polymorphism in humans and apes. Primates; journal of primatology 15 16467955
2013 Loss of GGN leads to pre-implantation embryonic lethality and compromised male meiotic DNA double strand break repair in the mouse. PloS one 14 23451117
2013 Cytogenetic and molecular analysis of infertile Chinese men: karyotypic abnormalities, Y-chromosome microdeletions, and CAG and GGN repeat polymorphisms in the androgen receptor gene. Genetics and molecular research : GMR 14 23884765
2012 Androgen receptor CAG and GGN polymorphisms in boys with isolated hypospadias. Journal of pediatric endocrinology & metabolism : JPEM 13 22570967
2006 GGN repeat length and GGN/CAG haplotype variations in the androgen receptor gene and prostate cancer risk in south Indian men. Journal of human genetics 13 16969583
2015 Polymorphism of CAG and GGN repeats of androgen receptor gene in women with polycystic ovary syndrome. Reproductive biomedicine online 12 26511871
2010 No correlation between androgen receptor CAG and GGN repeat length and the degree of genital virilization in females with 21-hydroxylase deficiency. The Journal of clinical endocrinology and metabolism 11 20233785
2013 Non-linear association between androgen receptor CAG and GGN repeat lengths and reproductive parameters in fertile European and Inuit men. Molecular and cellular endocrinology 10 23510718
2016 Predictive value of GGN and CAG repeat polymorphisms of androgen receptors in testicular cancer: a meta-analysis. Oncotarget 9 26885616
2004 Length and somatic mosaicism of CAG and GGN repeats in the androgen receptor gene and the risk of prostate cancer in men with benign prostatic hyperplasia. Annals of Saudi medicine 8 15310009
2016 Shorter GGN Repeats in Androgen Receptor Gene Would Not Increase the Risk of Prostate Cancer. Technology in cancer research & treatment 7 28279145
2015 ANDROGEN RECEPTOR CAG AND GGN REPEAT POLYMORPHISMS AND BONE MASS IN BOYS AND GIRLS. Nutricion hospitalaria 6 26667715
2024 GGN-GO: geometric graph networks for predicting protein function by multi-scale structure features. Briefings in bioinformatics 5 39487084
2017 Association of androgen receptor gene CAG and GGN repeat polymorphism with cryptorchidism: A meta-analysis. Andrologia 5 29044734
2014 Associations between androgen receptor CAG & GGN repeat polymorphism & recurrent spontaneous abortions in Chinese women. The Indian journal of medical research 5 25027083
2015 Association of androgen receptor GGN repeat length polymorphism and male infertility in Khuzestan, Iran. Iranian journal of reproductive medicine 4 26221130
2017 Androgen receptor gene CAG and GGN repeat lengths as predictors of recovery of spermatogenesis following testicular germ cell cancer treatment. Asian journal of andrology 2 27873769
2016 Androgen receptor CAG and GGN repeat length variation contributes more to the tumorigenesis of osteosarcoma. Oncotarget 2 27626686
2013 [Polymorphisms of (CAG)n and(GGN)n repeats of androgen receptor gene among ethnic Hui and Han Chinese from Ningxia]. Zhonghua yi xue yi chuan xue za zhi = Zhonghua yixue yichuanxue zazhi = Chinese journal of medical genetics 2 23744333
2024 Does clinical T1N0 GGN really require checking for distant metastasis during initial staging for lung cancer? Cancer imaging : the official publication of the International Cancer Imaging Society 1 38831467
2023 CAG and GGN repeat polymorphisms in the androgen receptor gene of a Chilean pediatric cohort with idiopathic inguinal cryptorchidism. Andrology 1 37377277
2019 GGN Promotes Tumorigenesis by Regulating Proliferation and Apoptosis in Colorectal Cancer. Pathology oncology research : POR 1 30721393
2015 Androgen receptor CAG and GGN repeat polymorphisms influence performance in boys and girls. The Journal of sports medicine and physical fitness 1 26609967
2025 GGN repeat length of the androgen receptor gene is associated with antral follicle count in Chinese women undergoing controlled ovarian stimulation. Nan fang yi ke da xue xue bao = Journal of Southern Medical University 0 40031964
2024 gGN: Representing the Gene Ontology as low-rank Gaussian distributions. Computers in biology and medicine 0 39395345
2018 The relation between isolated micropenis in childhood with CAG and GGN repeat polymorphisms in the androgen receptor gene. Turkish journal of medical sciences 0 29714466

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