Affinage

FERMT3

Fermitin family homolog 3 · UniProt Q86UX7

Length
667 aa
Mass
76.0 kDa
Annotated
2026-06-09
20 papers in source corpus 7 papers cited in narrative 7 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 5/5 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

FERMT3 encodes kindlin-3, a FERM-domain adaptor protein required for integrin function in hematopoietic cells (PMID:19064721, PMID:20216991). Truncating loss-of-function mutations that ablate kindlin-3 protein in leukocytes and platelets cause leukocyte adhesion deficiency type III (LAD-1/variant syndrome), establishing kindlin-3 as essential for inside-out integrin activation (PMID:19064721). In patient cells lacking functional kindlin-3, activation of the platelet integrin αIIbβ3, the α2β1-integrin response, Rap-1 activation, and leukocyte adhesion to VCAM-1 and endothelium are all severely impaired, and these defects are corrected by hematopoietic stem cell transplantation, confirming the causal hematopoietic role (PMID:20216991). Beyond its canonical integrin function, FERMT3 modulates Wnt/β-catenin signaling across non-hematopoietic contexts: it acts through integrin-mediated Wnt/β-catenin signaling to regulate glioma proliferation and temozolomide chemoresistance (PMID:28778805), inhibits Wnt/β-catenin to suppress smoke-induced EMT, migration, and cell-cycle progression in lung epithelial cells (PMID:34742298), and suppresses colorectal cancer invasion and 5-FU resistance while enhancing NK-cell killing by lowering β-catenin-driven PD-L1 expression (PMID:35672907). FERMT3 is also expressed in keloid macrophages and fibroblasts, where its modulation alters cellular metabolism, cytokine output, proliferation, and migration (PMID:40928556).

Mechanistic history

Synthesis pass · year-by-year structured walk · 7 steps
  1. 2003 Low

    Established the domain architecture and likely localization of the FERMT3 product, framing it as a candidate membrane adaptor at integrin adhesion sites before any direct function was known.

    Evidence Proteomic identification from plasma-membrane fractions with bioinformatic domain analysis and reference to C. elegans UNC-112 colocalization with integrin

    PMID:12886250

    Open questions at the time
    • No direct functional assay performed on the FERMT3 protein itself
    • Integrin localization inferred from an ortholog, not demonstrated for human kindlin-3
    • No interactome or activation mechanism defined
  2. 2008 High

    Answered whether FERMT3 is genetically required for integrin function in humans by showing truncating mutations ablate kindlin-3 protein and cause LAD-1/variant syndrome.

    Evidence Homozygosity mapping and Sanger sequencing identifying premature stop codons across independent families, with western blot confirming absent protein in patient leukocytes and platelets

    PMID:19064721

    Open questions at the time
    • Molecular mechanism by which kindlin-3 activates integrins not resolved at structural level
    • Did not dissect cell-type-specific contributions
  3. 2010 High

    Defined the functional consequences of kindlin-3 loss and proved causality, showing impaired inside-out activation of multiple integrins and Rap-1 signaling that is reversed by transplantation.

    Evidence Flow cytometry, platelet aggregation/secretion, Rap-1 activation, adhesion assays in patient cells with the R573X mutation, plus HSCT rescue

    PMID:20216991

    Open questions at the time
    • Direct biochemical link between kindlin-3 and Rap-1 not established
    • Order of events in the integrin activation cascade not resolved
  4. 2017 Medium

    Extended FERMT3 function beyond hematopoietic adhesion by linking it to integrin-mediated Wnt/β-catenin signaling controlling glioma proliferation and chemoresistance.

    Evidence siRNA knockdown with proliferation assays, TOPflash/FOPflash Wnt reporter, and western blot in glioblastoma cells

    PMID:28778805

    Open questions at the time
    • No rescue or mutagenesis to confirm specificity
    • Mechanistic coupling between integrin and Wnt not biochemically defined
    • Single cancer context
  5. 2021 Medium

    Showed FERMT3 can act as a suppressor of EMT and migration through Wnt/β-catenin inhibition in non-cancer epithelial cells under environmental stress.

    Evidence FERMT3 overexpression with EMT-marker and Wnt pathway western blots, migration assay, and cell-cycle analysis in A549 cells

    PMID:34742298

    Open questions at the time
    • Single cell line and single lab
    • Direction of effect opposite to glioma context not reconciled mechanistically
    • No loss-of-function confirmation
  6. 2022 Medium

    Connected FERMT3-mediated Wnt suppression to tumor immune evasion by demonstrating that lowering β-catenin reduces PD-L1 and enhances NK-cell killing in colorectal cancer.

    Evidence Overexpression/knockdown with invasion, apoptosis, NK co-culture cytotoxicity assays, β-catenin/PD-L1 western blots, and Wnt-agonist rescue

    PMID:35672907

    Open questions at the time
    • Single lab without in vivo validation
    • Mechanism linking FERMT3 to β-catenin level not defined
    • PD-L1 regulation shown correlatively at protein level
  7. 2025 Medium

    Identified a stromal/immune expression niche for FERMT3 in keloid tissue and linked it to cellular metabolism and inflammatory output.

    Evidence scRNA-seq localization plus in vitro modulation in macrophages and fibroblasts with metabolic, cytokine, proliferation, and migration assays

    PMID:40928556

    Open questions at the time
    • Molecular pathway linking FERMT3 to metabolic reprogramming not defined
    • Correlative single-lab data without genetic rescue
    • Integrin or Wnt involvement not tested in this context

Open questions

Synthesis pass · forward-looking unresolved questions
  • How kindlin-3's canonical integrin-activation function mechanistically connects to the context-dependent Wnt/β-catenin modulation reported in non-hematopoietic cells remains unresolved.
  • No structural or biochemical mechanism coupling integrin engagement to β-catenin levels
  • Opposing effects across tissues not reconciled
  • No in vivo demonstration of the Wnt-regulatory role

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060090 molecular adaptor activity 2 GO:0098772 molecular function regulator activity 1
Localization
GO:0005886 plasma membrane 1
Pathway
R-HSA-162582 Signal Transduction 3 R-HSA-168256 Immune System 2 R-HSA-109582 Hemostasis 1

Evidence

Reading pass · 7 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2008 Truncating mutations in FERMT3 (encoding kindlin-3) cause LAD-1/variant syndrome by abrogating kindlin-3 protein expression in leukocytes and platelets, resulting in defective integrin activation. Loss-of-function established by homozygosity mapping, identification of premature stop codons (p.Arg509X, p.Arg573X, p.Trp229X) in independent families, and absence of kindlin-3 protein in patient leukocytes and platelets. Homozygosity mapping, Sanger sequencing of FERMT3, western blot confirmation of absent kindlin-3 protein in patient leukocytes and platelets Blood High 19064721
2003 FERMT3/MIG2B encodes a protein containing two plasma-membrane-binding FERM domains and a pleckstrin homology domain; its C. elegans homolog UNC-112 colocalizes with integrin at cell-matrix adhesion complexes, indicating conserved localization at integrin adhesion sites. Proteomic identification by MALDI-TOF MS from plasma-membrane fractions; bioinformatic domain analysis; literature reference to C. elegans UNC-112 localization Leukemia Low 12886250
2010 Homozygous FERMT3 nonsense mutation (R573X) causes severely decreased inside-out activation of integrin αIIbβ3 (GPIIb/IIIa) in platelets, loss of α2β1-integrin response to aggretin-A, impaired Rap-1 activation after PMA stimulation in mononuclear cells, and severely reduced leukocyte adhesion to VCAM-1 and endothelial cells. Hematopoietic stem cell transplantation normalised these integrin-dependent functions. Flow cytometry (fibrinogen binding), platelet aggregation and granule secretion assays, Rap-1 activation assay, cell adhesion assay to VCAM-1 and endothelial cells, HSCT rescue experiment Thrombosis and haemostasis High 20216991
2017 FERMT3 knockdown suppresses glioblastoma cell proliferation and chemoresistance to temozolomide, and FERMT3 regulates glioma cell activity through integrin-mediated Wnt/β-catenin signaling, as demonstrated by TOPflash/FOPflash reporter assays and western blot. siRNA knockdown, cell proliferation assay, TOPflash/FOPflash Wnt reporter assay, western blot for integrin activation and β-catenin pathway components Neuroscience letters Medium 28778805
2021 Overexpression of FERMT3 inhibits cigarette smoke extract-induced epithelial-mesenchymal transition (EMT), cell migration, and cell cycle progression in A549 lung epithelial cells through inhibition of Wnt/β-catenin signaling. FERMT3 overexpression, western blot for EMT markers and Wnt/β-catenin pathway components, cell migration assay, cell cycle analysis Respiratory research Medium 34742298
2022 FERMT3 overexpression suppresses CRC cell invasion and chemoresistance to 5-FU, and enhances NK cell-mediated killing of CRC cells, mechanistically by inhibiting Wnt/β-catenin signaling and reducing downstream PD-L1 expression. Reactivation of Wnt/β-catenin with a specific agonist reversed these FERMT3-mediated effects. FERMT3 overexpression and knockdown, invasion assay, cell viability/apoptosis assay, caspase-3 activity, NK cell co-culture cytotoxicity assay, western blot for β-catenin/PD-L1, Wnt agonist rescue experiment Clinical and experimental pharmacology & physiology Medium 35672907
2025 FERMT3 is highly expressed in macrophages and fibroblasts in keloid tissue; in vitro modulation of FERMT3 in these cell types significantly altered their metabolic profiles (glycolysis, oxidative phosphorylation), inflammatory cytokine production, proliferation, and migration. scRNA-seq localization, in vitro FERMT3 modulation in macrophages and fibroblasts, metabolic profiling (glycolysis/OXPHOS assays), cytokine measurement, proliferation and migration assays Functional & integrative genomics Medium 40928556

Source papers

Stage 0 corpus · 20 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2008 LAD-1/variant syndrome is caused by mutations in FERMT3. Blood 174 19064721
2003 Proteomic analysis of the cell-surface membrane in chronic lymphocytic leukemia: identification of two novel proteins, BCNP1 and MIG2B. Leukemia 61 12886250
2010 Novel integrin-dependent platelet malfunction in siblings with leukocyte adhesion deficiency-III (LAD-III) caused by a point mutation in FERMT3. Thrombosis and haemostasis 50 20216991
2015 Comparative distribution and in vitro activities of the urotensin II-related peptides URP1 and URP2 in zebrafish: evidence for their colocalization in spinal cerebrospinal fluid-contacting neurons. PloS one 41 25781313
2015 Kindlin 3 (FERMT3) is associated with unstable atherosclerotic plaques, anti-inflammatory type II macrophages and upregulation of beta-2 integrins in all major arterial beds. Atherosclerosis 38 26188538
2017 FERMT3 contributes to glioblastoma cell proliferation and chemoresistance to temozolomide through integrin mediated Wnt signaling. Neuroscience letters 28 28778805
2021 FERMT3 mediates cigarette smoke-induced epithelial-mesenchymal transition through Wnt/β-catenin signaling. Respiratory research 26 34742298
1994 Suppression of yeast RNA polymerase III mutations by the URP2 gene encoding a protein homologous to the mammalian ribosomal protein S20. Journal of molecular biology 22 8021936
2022 Urotensin II-related peptides, Urp1 and Urp2, control zebrafish spine morphology. eLife 21 36453722
2022 Blockage of PD-L1 by FERMT3-mediated Wnt/β-catenin signalling regulates chemoresistance and immune evasion of colorectal cancer cells. Clinical and experimental pharmacology & physiology 13 35672907
2019 A Novel Nonsense Mutation in FERMT3 Causes LAD-III in a Pakistani Family. Frontiers in genetics 13 31068971
2017 Hematopoietic stem cell transplantation corrects osteopetrosis in a child carrying a novel homozygous mutation in the FERMT3 gene. Bone 10 28095295
2019 Novel variants in FERMT3 and RASGRP2-Genetic linkage in Glanzmann-like bleeding disorders. Pediatric blood & cancer 8 31724816
2023 A Novel Deletion in FERMT3 Causes LAD-III in a Turkish Family. Journal of clinical immunology 6 36648575
2023 LAD-III, a Mild Phenotype Resulting From a Novel Variant of FERMT3 Gene: A Case Report. Cureus 2 38269242
2024 Immune-Related Molecules CD3G and FERMT3: Novel Biomarkers Associated with Sepsis. International journal of molecular sciences 1 38255822
2026 Typical persistent organic pollutant exposure induces body axial curvature through binding to Kdm1a transcriptionally activating expression of urp2 in zebrafish. Journal of hazardous materials 0 41855990
2025 A Novel Variant of the FERMT3 Gene Associated With Leukocyte Adhesion Deficiency Type III (LAD-III) in a Saudi Family: A Case Series. Cureus 0 40078257
2025 Integrative analysis identifies FERMT3 as a key regulator of metabolic reprogramming in keloid scarring and metabolic syndrome. Functional & integrative genomics 0 40928556
2021 Novel FERMT3 and PTPRQ Mutations Associated with Leukocyte Adhesion Deficiency-III and Sensorineural Hearing Loss. Journal of pediatric genetics 0 38162163

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