Affinage

ELFN1

Protein ELFN1 · UniProt P0C7U0

Length
828 aa
Mass
90.5 kDa
Annotated
2026-06-09
38 papers in source corpus 12 papers cited in narrative 12 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 7/7 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

ELFN1 is a postsynaptic transmembrane leucine-rich repeat adhesion molecule expressed by defined subsets of hippocampal and cortical interneurons that organizes target-specific synaptic properties through retrograde transsynaptic signaling (PMID:23042292, PMID:24312227). It physically engages presynaptic group III metabotropic glutamate receptors in trans — binding mGluR4, mGluR6, mGluR7, and mGluR8 but not group I or II mGluRs — via its extracellular LRR/LRRCT module, which is necessary and sufficient for receptor binding and for ELFN1's own synaptic trafficking (PMID:29686062, PMID:40930976). At pyramidal→somatostatin interneuron synapses ELFN1 recruits and clusters mGluR7, driving glutamate-independent constitutive receptor activation that suppresses cAMP signaling by altering G protein activation kinetics, thereby setting a tonic low initial release probability and the characteristic facilitating behavior of these synapses (PMID:25047565, PMID:29686062, PMID:30940718). The interaction is bidirectional and stabilizing: N-glycosylation of the partner receptor (mGluR7 or mGluR6) is required for stable ELFN1 binding and surface localization, and reciprocally ELFN1 localization depends on its receptor partner, as shown by loss and rescue of rod-spherule ELFN1 in mGluR6-null retina (PMID:32931036, PMID:39681475, PMID:40930976). ELFN1 traffics to the membrane as an obligate LRR-mediated homodimer requiring a ~30-residue juxtamembranous intracellular motif (PMID:39675706). Loss-of-function variants that block ELFN1 surface trafficking cause a human neurodevelopmental disorder with epilepsy, recapitulated by seizures, hyperactivity, and motor abnormalities in Elfn1-null mice and zebrafish (PMID:25047565, PMID:40576023). ELFN1 also functions as a pharmacological context for mGluR7 modulator action, attenuating the maximal potentiation of mGluR7 positive allosteric modulators while preserving their activity at native synapses (PMID:40689847).

Mechanistic history

Synthesis pass · year-by-year structured walk · 12 steps
  1. 2012 High

    Established that a postsynaptic interneuron-expressed molecule can dictate presynaptic release properties, defining a retrograde transsynaptic mechanism for building target-specific synapses.

    Evidence Cell-type-selective expression analysis plus loss-of-function in O-LM interneurons with electrophysiological readout of release probability

    PMID:23042292

    Open questions at the time
    • Molecular partner mediating the retrograde signal not yet identified
    • No biochemical interaction defined
  2. 2013 Medium

    Mapped ELFN1 expression across interneuron and projection-neuron populations and demonstrated an in vivo requirement, linking its loss to seizures and behavioral abnormalities.

    Evidence β-galactosidase reporter knock-in expression mapping and behavioral phenotyping of knockout mice

    PMID:24312227

    Open questions at the time
    • Molecular mechanism of phenotype unresolved
    • Single lab
  3. 2014 High

    Identified mGluR7 as the in-trans presynaptic partner that ELFN1 recruits, and connected the C-terminal recruitment region to human damaging mutations.

    Evidence Knockout mice, mGluR7 synaptic immunolocalization, presynaptic plasticity electrophysiology, and human mutation analysis

    PMID:25047565

    Open questions at the time
    • Binding determinants not yet mapped to specific ectodomain regions
    • Effect on receptor signaling not biochemically characterized
  4. 2018 High

    Defined ELFN1 as a transsynaptic allosteric modulator with selectivity for all group III mGluRs and showed it directly reshapes G protein/cAMP signaling.

    Evidence Site-directed mutagenesis mapping two ectodomain binding sites; HEK293 transcellular reconstitution; BRET G protein kinetic assay

    PMID:29686062

    Open questions at the time
    • Structural basis of the LRR–mGluR interface not resolved
    • Reconstituted in heterologous cells rather than native synapses
  5. 2019 High

    Demonstrated that ELFN1 drives constitutive, glutamate-independent mGluR7 activation by clustering, setting tonic low release probability at cortical pyr→SOM synapses.

    Evidence Cortical slice electrophysiology with pharmacological dissection and genetic loss-of-function for Elfn1 and mGluR7

    PMID:30940718

    Open questions at the time
    • Layer-specific contribution of GluK2-KARs versus mGluR7 not fully separated
    • How clustering produces constitutive activity mechanistically unclear
  6. 2020 Medium

    Showed that receptor N-glycosylation is a prerequisite for ELFN1 binding, coupling mGluR7 maturation to stable transsynaptic complex formation.

    Evidence N-glycosylation site mutagenesis, fractionation, co-immunoprecipitation, and glycosylation inhibition in heterologous cells and neurons

    PMID:32931036

    Open questions at the time
    • Single lab
    • Direct structural role of glycans in the binding interface not defined
  7. 2024 Medium

    Defined ELFN1 trafficking determinants, establishing that it reaches the membrane as an obligate LRR-mediated homodimer gated by a short intracellular motif.

    Evidence Domain deletion mutagenesis, biochemical fractionation, dimerization assays, and synaptic localization imaging

    PMID:39675706

    Open questions at the time
    • Functional consequence of ELFN1/ELFN2 heterodimerization in vivo unknown
    • Single lab
  8. 2024 Medium

    Extended the glycosylation-dependent binding rule to mGluR6 and linked CSNB mutations to failed ELFN1 binding via defective Golgi glycosylation.

    Evidence Glycosylation analysis of mGluR6 CSNB mutants, co-IP with ELFN1, and bipolar cell immunolocalization

    PMID:39681475

    Open questions at the time
    • Single lab
    • Causality between glycosylation and binding shown correlatively in mutants
  9. 2024 Low

    Provided experimental evidence that ELFN1 acts outside the nervous system, influencing fibroblast morphology and motility in ECM models.

    Evidence Patient-derived ELFN1-mutant skin fibroblasts in in vitro and decellularized ECM models

    PMID:38986898

    Open questions at the time
    • No molecular mechanism identified beyond loss of expression
    • Single patient-derived model, not independently replicated
  10. 2025 Medium

    Localized the binding/trafficking function to the LRR-LRRCT module and demonstrated bidirectional mutual stabilization between ELFN1 and mGluR6 at rod spherules.

    Evidence ELFN1 deletion-construct binding assays, mGluR6-KO immunolocalization, and mGluR6-EGFP rescue in ON-bipolar cells

    PMID:40930976

    Open questions at the time
    • Single lab
    • Atomic structure of the LRRCT–mGluR interface not determined
  11. 2025 Medium

    Confirmed ELFN1 loss-of-function as a Mendelian cause of neurodevelopmental disorder with epilepsy, tying the disease to defective ELFN1 surface trafficking.

    Evidence Whole-exome sequencing of multiple families, cell-surface trafficking assays, and Elfn1 KO mouse and zebrafish phenotyping

    PMID:40576023

    Open questions at the time
    • Genotype–phenotype correlations across variant classes incomplete
    • Single study
  12. 2025 Medium

    Characterized how ELFN1 shapes the pharmacology of mGluR7 allosteric modulators, informing therapeutic targeting at native synapses.

    Evidence Transcellular mGluR7 signaling assays ± ELFN1 and slice electrophysiology at pyr→SOM synapses

    PMID:40689847

    Open questions at the time
    • Single lab
    • Therapeutic relevance in disease models not tested

Open questions

Synthesis pass · forward-looking unresolved questions
  • The atomic structure of the ELFN1 LRR/LRRCT–group III mGluR complex and the mechanism by which trans-binding converts to constitutive G protein modulation remain unresolved.
  • No structural model of the binding interface
  • Mechanistic link between clustering and constitutive receptor activity undefined
  • Non-neuronal ECM role lacks molecular mechanism

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060089 molecular transducer activity 2 GO:0098631 cell adhesion mediator activity 2 GO:0098772 molecular function regulator activity 2
Localization
GO:0005886 plasma membrane 3
Pathway
R-HSA-112316 Neuronal System 3 R-HSA-1500931 Cell-Cell communication 2 R-HSA-162582 Signal Transduction 1

Evidence

Reading pass · 12 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2012 ELFN1 is selectively expressed by hippocampal O-LM interneurons and, when expressed postsynaptically, regulates presynaptic release probability to direct the formation of highly facilitating (low release probability) pyramidal-O-LM synapses, demonstrating a retrograde transsynaptic signaling role. Selective expression analysis combined with loss-of-function in identified interneuron subtypes with electrophysiological readout of release probability Science High 23042292
2013 Elfn1 is expressed in distinct subsets of hippocampal and cortical interneurons and also in axons of excitatory habenular neurons and long-range GABAergic globus pallidus neurons; Elfn1 mutant mice exhibit seizures, hyperactivity, and motor abnormalities reversible by amphetamine, establishing an in vivo functional requirement. β-galactosidase reporter knock-in expression analysis; behavioral phenotyping of knockout mice PloS one Medium 24312227
2014 ELFN1 physically interacts in trans with presynaptic mGluR7, recruits mGluR7 to synaptic sites on somatostatin interneurons in the hippocampal CA1 stratum oriens and dentate gyrus, and is required for presynaptic plasticity at these synapses; loss of Elfn1 causes deficits in mGluR7 recruitment and results in hyperactivity and sensory-triggered epileptic seizures in mice. Damaging missense mutations of human ELFN1 cluster in the C-terminal region required for mGluR7 recruitment. Elfn1 knockout mice, immunolocalization of mGluR7 at synapses, electrophysiological assessment of presynaptic plasticity, human mutation analysis Nature communications High 25047565
2018 ELFN1 selectively binds all group III mGluRs (mGluR4, mGluR6, mGluR7, mGluR8) but not group I or II mGluRs; binding determinants were mapped to two distinct sites on the ELFN1 ectodomain by site-directed mutagenesis. In a transcellular signaling reconstitution assay in HEK293 cells, ELFN1 acts as a transsynaptic allosteric modulator that suppresses cAMP accumulation and alters both agonist-induced and constitutive group III mGluR activity by altering G protein activation kinetics, as measured by BRET. Site-directed mutagenesis; transcellular signaling reconstitution assay in HEK293 cells; BRET-based real-time kinetic G protein activation assay Proceedings of the National Academy of Sciences of the United States of America High 29686062
2019 Elfn1 produces glutamate-independent (constitutive) activation of presynaptic mGluR7 through clustering at cortical pyramidal→somatostatin interneuron synapses, establishing a tonic low release probability. Facilitation at layer 2/3 synapses also depends on presynaptic GluK2-KARs, which can be engaged at layer 5 synapses via calmodulin activation, revealing layer-specific synaptic properties. Electrophysiology of cortical SOM interneuron synapses in mouse brain slices; pharmacological dissection; loss-of-function for Elfn1 and mGluR7 The Journal of neuroscience High 30940718
2020 N-glycosylation of mGluR7 at four asparagine residues is essential for its forward trafficking and surface expression; deglycosylated mGluR7 is retained in the ER and degraded via the autophagolysosomal pathway. N-glycosylation of mGluR7 promotes its interaction with ELFN1, enabling proper localization and stable surface expression of mGluR7 at the presynaptic active zone. Mutagenesis of N-glycosylation sites; subcellular fractionation; co-immunoprecipitation of mGluR7 and ELFN1; pharmacological inhibition of glycosylation FASEB journal Medium 32931036
2024 The intracellular domain of ELFN1 (a ~30 amino acid juxtamembranous region) controls membrane trafficking and postsynaptic localization of ELFN1. ELFN1 exists as an obligate homodimer prior to membrane trafficking, with homodimerization mediated by the extracellular leucine-rich repeat (LRR) domain rather than the intracellular region. A single membrane-targeting motif in one protomer is sufficient for trafficking of the homodimer. ELFN2 exhibits similar properties and heterodimerizes with ELFN1. Domain deletion mutagenesis; biochemical fractionation; dimerization assays; synaptic localization imaging The Journal of biological chemistry Medium 39675706
2024 CSNB-associated missense mutations in the extracellular ligand-binding domain of mGluR6 cause a trafficking defect leading to lack of complex N-glycosylation (suggesting Golgi bypass), failure to bind ELFN1, and mislocalization in bipolar cells, establishing that Golgi-acquired N-glycosylation of mGluR6 is required for its interaction with ELFN1 and correct synaptic targeting. Biochemical glycosylation analysis of mGluR6 mutants; co-immunoprecipitation binding assay with ELFN1; immunolocalization in bipolar cells Life science alliance Medium 39681475
2025 The LRR and LRR C-terminal cap (LRRCT) regions of the ELFN1 extracellular domain are necessary and sufficient for binding to all group III mGluRs including mGluR6; deletion of the LRRCT domain abolishes trafficking of ELFN1 to rod photoreceptor spherules. In mGluR6-null mice, presynaptic ELFN1 localization in rod spherules is disrupted and rescued by re-expressing mGluR6-EGFP in ON-bipolar cells, demonstrating bidirectional transsynaptic mutual stabilization. In vitro binding assays with ELFN1 deletion constructs; immunolocalization in mGluR6 KO mice; mGluR6-EGFP rescue in ON-bipolar cells The Journal of neuroscience Medium 40930976
2024 ELFN1 is expressed in skin fibroblasts and its loss (due to signal-peptide frameshift mutation) dramatically alters fibroblast morphology, growth, proliferation, and motility in an in vitro ECM model, providing experimental evidence that ELFN1 participates in cell–ECM attachment outside the nervous system. Primary skin fibroblast isolation from ELFN1-mutated patients; in vitro ECM and decellularized ECM models; comparative morphological and motility analysis Life sciences Low 38986898
2025 Biallelic frameshift and in-frame deletion variants in ELFN1 disrupt ELFN1 protein trafficking to the cell surface (loss of function), causing a neurodevelopmental disorder with epilepsy in humans; Elfn1 loss in mice and zebrafish recapitulates motor abnormalities and seizures. Whole-exome sequencing of affected individuals; cell-surface trafficking assay for ELFN1 variants; behavioral/seizure phenotyping in Elfn1 KO mice and zebrafish Genetics in medicine Medium 40576023
2025 Positive allosteric modulators (PAMs) of mGluR7 show decreased maximal potentiation in the presence of ELFN1 but retain the ability to potentiate receptor signaling; negative allosteric modulators (NAMs) show similar efficacy with or without ELFN1. A tool PAM retains activity at pyramidal cell–somatostatin interneuron synapses where endogenous ELFN1 is expressed. Transcellular mGluR7 signaling assay in HEK293 cells ± ELFN1; electrophysiology at pyr→SOM synapses in brain slices ACS chemical neuroscience Medium 40689847

Source papers

Stage 0 corpus · 38 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2022 Downregulation of MEIS1 mediated by ELFN1-AS1/EZH2/DNMT3a axis promotes tumorigenesis and oxaliplatin resistance in colorectal cancer. Signal transduction and targeted therapy 143 35351858
2012 Elfn1 regulates target-specific release probability at CA1-interneuron synapses. Science (New York, N.Y.) 127 23042292
2014 Elfn1 recruits presynaptic mGluR7 in trans and its loss results in seizures. Nature communications 98 25047565
2018 Synaptic adhesion protein ELFN1 is a selective allosteric modulator of group III metabotropic glutamate receptors in trans. Proceedings of the National Academy of Sciences of the United States of America 69 29686062
2019 Elfn1-Induced Constitutive Activation of mGluR7 Determines Frequency-Dependent Recruitment of Somatostatin Interneurons. The Journal of neuroscience : the official journal of the Society for Neuroscience 53 30940718
2020 LncRNA ELFN1-AS1 promotes esophageal cancer progression by up-regulating GFPT1 via sponging miR-183-3p. Biological chemistry 44 32229685
2020 ELFN1-AS1 accelerates the proliferation and migration of colorectal cancer via regulation of miR-4644/TRIM44 axis. Cancer biomarkers : section A of Disease markers 42 31929141
2020 ELFN1-AS1 accelerates cell proliferation, invasion and migration via regulating miR-497-3p/CLDN4 axis in ovarian cancer. Bioengineered 38 32779991
2013 Mutation of Elfn1 in mice causes seizures and hyperactivity. PloS one 32 24312227
2019 Extracellular vesicles from human umbilical cord mesenchymal stem cells treated with siRNA against ELFN1-AS1 suppress colon adenocarcinoma proliferation and migration. American journal of translational research 29 31814902
2022 Osteosarcoma Cell-Derived Exosomal ELFN1-AS1 Mediates Macrophage M2 Polarization via Sponging miR-138-5p and miR-1291 to Promote the Tumorgenesis of Osteosarcoma. Frontiers in oncology 28 35785218
2020 N-linked glycosylation of the mGlu7 receptor regulates the forward trafficking and transsynaptic interaction with Elfn1. FASEB journal : official publication of the Federation of American Societies for Experimental Biology 22 32931036
2014 ELFN1-AS1: a novel primate gene with possible microRNA function expressed predominantly in human tumors. BioMed research international 22 24707484
2023 ELFN1-AS1 promotes GDF15-mediated immune escape of colorectal cancer from NK cells by facilitating GCN5 and SND1 association. Discover oncology 20 37147528
2021 Long Non-Coding RNA ELFN1-AS1 Promoted Colon Cancer Cell Growth and Migration via the miR-191-5p/Special AT-Rich Sequence-Binding Protein 1 Axis. Frontiers in oncology 20 33634016
2021 LncRNA ELFN1-AS1 Promotes Retinoblastoma Growth and Invasion via Regulating miR-4270/SBK1 Axis. Cancer management and research 19 33574704
2022 Hypoxia-Induced Upregulation of lncRNA ELFN1-AS1 Promotes Colon Cancer Growth and Metastasis Through Targeting TRIM14 via Sponging miR-191-5p. Frontiers in pharmacology 17 35652045
2023 lncRNA ELFN1-AS1 promotes proliferation, migration and invasion and suppresses apoptosis in colorectal cancer cells by enhancing G6PD activity. Acta biochimica et biophysica Sinica 16 36786074
2022 MYC-Induced Upregulation of Lncrna ELFN1-AS1 Contributes to Tumor Growth in Colorectal Cancer via Epigenetically Silencing TPM1. Molecular cancer research : MCR 14 35857351
2021 Long non-coding RNA ELFN1-AS1 in the pathogenesis of pancreatic cancer. Annals of translational medicine 14 34164511
2021 A long non-coding RNA, ELFN1-AS1, sponges miR-1250 to upregulate MTA1 to promote cell proliferation, migration and invasion, and induce apoptosis in colorectal cancer. European review for medical and pharmacological sciences 12 34337713
2023 lncRNA ELFN1-AS1 upregulates TRIM29 by suppressing miR-211-3p to promote gastric cancer progression. Acta biochimica et biophysica Sinica 11 36876422
2021 Biallelic mutations in ELFN1 gene associated with developmental and epileptic encephalopathy and joint laxity. European journal of medical genetics 10 34509675
2022 Long non-coding RNA ELFN1-AS1-mediated ZBTB16 inhibition augments the progression of gastric cancer by activating the PI3K/AKT axis. The Kaohsiung journal of medical sciences 9 35451560
2024 Role of long non-coding RNA ELFN1-AS1 in carcinogenesis. Discover oncology 7 38478184
2024 Defective glycosylation and ELFN1 binding of mGluR6 congenital stationary night blindness mutants. Life science alliance 6 39681475
2024 Distinct autoregulatory roles of ELFN1 intracellular and extracellular domains on membrane trafficking, synaptic localization, and dimerization. The Journal of biological chemistry 5 39675706
2022 lncRNA ELFN1-AS1 enhances the progression of colon cancer by targeting miR-4270 to upregulate AURKB. Open medicine (Warsaw, Poland) 5 36561847
2024 The long noncoding RNA ELFN1-AS1 promotes gastric cancer growth and metastasis by interacting with TAOK1 to inhibit the Hippo signaling pathway. Cell death discovery 4 39528458
2023 m6A-related lncRNAs as potential biomarkers and the lncRNA ELFN1-AS1/miR-182-5p/BCL-2 regulatory axis in diffuse large B-cell lymphoma. Journal of cellular and molecular medicine 4 38037859
2025 The expression of the lncRNAs USP30-AS1, ELFN1-AS1, GAS8-AS1, and SNHG11 in breast cancer samples from Iranian patients from 2014 to 2019: a cross-sectional study. BMC research notes 2 39757210
2024 ELFN1 is a new extracellular matrix (ECM)-associated protein. Life sciences 2 38986898
2026 LncRNA ELFN1-AS1 maintains the stemness of colorectal cancer by preventing ubiquitinated degradation of the hnRNPA1 protein. Cellular and molecular life sciences : CMLS 1 41535615
2025 ELFN1 deficiency: The mechanistic basis and phenotypic spectrum of a neurodevelopmental disorder with epilepsy. Genetics in medicine : official journal of the American College of Medical Genetics 1 40576023
2025 Trans-synaptic Interaction with mGluR6 Contributes to ELFN1 Presynaptic Enrichment in Rod Photoreceptors. The Journal of neuroscience : the official journal of the Society for Neuroscience 1 40930976
2023 Retraction: Long non-coding RNA ELFN1-AS1 promoted colon cancer cell growth and migration via the miR-191-5p/special AT-rich sequence-binding protein 1 axis. Frontiers in oncology 1 38074639
2026 LncRNA ELFN1-AS1 promotes colon cancer occurrence and progression by regulating the miR-191-5p/ZBTB34 axis. Translational cancer research 0 42180880
2025 Profiling the Impact of mGlu7/Elfn1 Protein Interactions on the Pharmacology of mGlu7 Allosteric Modulators. ACS chemical neuroscience 0 40689847

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