| 1990 |
SELB (bacterial ortholog) was purified and shown to be an EF-Tu-like protein that specifically binds selenocysteyl-tRNA(Sec); it was found partially associated with ribosomes by cell fractionation, establishing it as the first elongation factor with specificity for a particular charged tRNA. |
Protein purification, limited proteolysis, immunological analysis, ribosome fractionation |
The Journal of biological chemistry |
High |
2140572
|
| 1991 |
The 8-bp aminoacyl-acceptor stem of tRNA(Sec) is the key determinant for binding to SELB and for exclusion from EF-Tu; reducing the stem to 7 bp (canonical length) abolished SELB binding but allowed EF-Tu binding, irrespective of the charged amino acid. |
In vitro binding assays with purified SELB, EF-Tu, and tRNA(Sec) mutants; in vivo selenoprotein synthesis assay |
The Journal of biological chemistry |
High |
1939093
|
| 1991 |
SELB specifically complexes selenocysteyl-tRNA(Sec); interaction with the selenol group of the aminoacylated residue is required for stable SELB·tRNA complex formation, providing the biochemical basis for exclusive selection of Sec-tRNA(Sec) during UGA decoding. |
Biochemical characterization of purified SELB with charged tRNA variants |
Biochimie |
Medium |
1839607
|
| 1993 |
Bacterial SELB directly and specifically binds the mRNA hairpin SECIS element (located 3' of the UGA codon) via its loop region; in the presence of selenocysteinyl-tRNA, SELB forms a quaternary complex with charged tRNA and mRNA, positioning Sec-tRNA(Sec) at the UGA codon. |
Gel shift assays, RNA footprinting with nucleases and iodine, complex formation assays |
Proceedings of the National Academy of Sciences of the United States of America |
High |
8483932
|
| 1994 |
The SELB-GTP-Sec-tRNA(Sec) ternary complex binds to selenoprotein mRNAs fdhF and fdnG; toeprint experiments showed SELB recognizes ribosome-bound mRNA and may protrude toward the large subunit, placing the ternary complex at the selenocysteine codon. |
Boundary experiments, toeprinting assays |
Genes & development |
High |
8314089
|
| 1996 |
The C-terminal domain of bacterial SELB (a ~17 kDa subdomain) specifically binds the mRNA SECIS hairpin; a truncated SELB lacking this domain still binds selenocysteyl-tRNA(Sec) but cannot bind mRNA, demonstrating that the tRNA- and mRNA-binding functions are physically separable. |
Domain truncation, expression of isolated fragments, RNA-binding assays, in vivo competition experiments |
Journal of molecular biology |
High |
8893853
|
| 1996 |
Bases G23, U24, and bulge residues U17/U18 in the SECIS mRNA hairpin apical loop are directly involved in binding to SELB in both fdhF and fdnG mRNAs; SELB binding affinity for the fdhF hairpin is ~30 nM (apparent Kd). |
Chemical probing, NMR-based structure determination, computer modeling, binding studies |
RNA (New York, N.Y.) |
High |
8634916
|
| 1996 |
Overproduction of SELB reduces selenocysteine UGA readthrough; co-overexpression of tRNA(Sec) reverses inhibition, establishing that a correct stoichiometric quaternary complex (SELB·GTP·Sec-tRNA(Sec)·mRNA) is required for selenocysteine insertion in vivo. |
In vivo overexpression, UGA readthrough assay (lacZ fusion), genetic complementation |
Molecular microbiology |
Medium |
8898393
|
| 1997 |
In vitro selection (SELEX) identified novel RNA aptamers binding SELB; in vivo analysis showed that mRNA hairpin binding to SELB is necessary but not sufficient for UGA readthrough, implying SECIS element functions beyond mere tethering of Sec-tRNA(Sec) to UGA. |
In vitro SELEX, domain-mapping with truncated SELB, in vivo lacZ UGA readthrough assay |
Proceedings of the National Academy of Sciences of the United States of America |
Medium |
9192624
|
| 1998 |
SELB possesses low intrinsic GTPase activity stimulated by 70S ribosomes; the SECIS mRNA hairpin further increases ribosome-stimulated GTPase activity 3–4 fold (via increased kcat), showing mRNA binding induces a conformational switch that promotes GTP hydrolysis. |
GTPase activity assays in vitro with ribosomes and mRNA hairpin, kinetic analysis |
Biochemistry |
High |
9454578
|
| 1999 |
The C-terminus of SELB is the primary interaction domain for mRNA hairpin binding; the vast majority of SELEX-derived aptamers from a random pool bound specifically to the C-terminal domain of SELB. |
In vitro SELEX with full-length and truncated SELB, domain mapping |
RNA (New York, N.Y.) |
Medium |
10496219
|
| 2000 |
SelB GTP affinity (Kd = 0.74 µM) and GDP affinity (Kd = 13.4 µM) are much lower than other translation factors; GDP release is very rapid (15 s⁻¹), explaining why no GDP/GTP exchange factor is needed. The SECIS RNA minihelix binds with Kd ~1 nM, affinity increasing further when Sec-tRNA(Sec) is bound to SelB. |
Stopped-flow kinetics using intrinsic tryptophan fluorescence and fluorescent nucleotide analogs; fluorescence resonance energy transfer |
The Journal of biological chemistry |
High |
10781605
|
| 2000 |
The archaeal SelB homolog (MJ0495/aSelB) from Methanococcus jannaschii binds guanine nucleotides and preferentially binds selenocysteyl-tRNA(Sec), but unlike bacterial SelB, does not bind the SECIS element, correlating with its lack of the bacterial C-terminal mRNA-binding domain. |
Purification of recombinant MJ0495, GTP binding assay, tRNA binding assay, SECIS binding assay |
Journal of molecular biology |
High |
10860743
|
| 2002 |
Crystal structure of the C-terminal mRNA-binding fragment of Moorella thermoacetica SelB (SelB-C) at 2.12 Å reveals four tandem winged-helix (WH) domains arranged in an L-shape; this is the first example of WH domains in RNA binding, with conserved basic residues defining the mRNA-binding site. |
X-ray crystallography with multiwavelength anomalous dispersion phasing |
The EMBO journal |
High |
12145214
|
| 2002 |
NMR structure of the prokaryotic SECIS mRNA hairpin shows conserved nucleotides exposed for SelB recognition; binding of the SelB C-terminal domain stabilizes RNA secondary structure; a GpU sequence at the tetraloop tip and a bulge uracil 5 base pairs away are essential for SelB interaction. |
NMR spectroscopy, mutagenesis of RNA, SelB binding assays |
Journal of molecular biology |
High |
12421564
|
| 2003 |
Inactivation of selB in Methanococcus maripaludis abolishes synthesis of all selenoproteins, proving aSelB is the archaeal translation factor specialized for selenocysteine insertion; the mutation also derepresses expression of cysteine-containing homologs and impairs growth on formate. |
Targeted gene knockout, metabolic labeling, proteomics |
Journal of bacteriology |
High |
12486046
|
| 2005 |
Crystal structure of the SelB mRNA-binding domain in complex with SECIS RNA at 2.3 Å reveals the first RNA-binding winged-helix (WH) domain; RNA recognition occurs without major conformational change in the WH motif, and the geometry allows the complex to wrap around the small ribosomal subunit. |
X-ray crystallography |
Nature structural & molecular biology |
High |
15665870
|
| 2007 |
Crystal structures of E. coli WH3/4 domains and M. thermoacetica WH1-4 domains each bound to SECIS RNA reveal that both WH motifs use the same structural elements for RNA binding; a salt bridge connecting WH2 to WH3 is disrupted upon mRNA binding, providing a molecular switch that may communicate between tRNA and mRNA binding sites. |
X-ray crystallography at 2.3 Å (E. coli WH3/4) and 2.6 Å (M. thermoacetica WH1-4), mutagenesis |
Journal of molecular biology |
High |
17537456
|
| 2007 |
Crystal structure of SelB C-terminal domain complexed with RNA reveals large domain rearrangement; an interdomain region forms new interactions with phosphate backbone of a neighboring RNA in a sequence-independent manner, potentially reflecting SelB interactions with tRNA or rRNA during ribosome engagement. |
X-ray crystallography |
Structure (London, England : 1993) |
Medium |
17502103
|
| 2009 |
Sec-tRNA(Sec) binds SelB·GTP with extraordinarily high affinity (Kd = 0.2 pM); binding is enthalpically driven with ~4 ion pairs. GTP hydrolysis accelerates release of Sec-tRNA(Sec) by >10⁶-fold (from 0.3 h⁻¹ to 240 s⁻¹). Ser-tRNA(Sec) and uncharged tRNA(Sec) bind with much lower affinity (~0.5 µM) to any nucleotide-bound form. |
Thermodynamic and kinetic stopped-flow measurements, fluorescent tRNA analogs |
The Journal of biological chemistry |
High |
19940162
|
| 2015 |
Crystal structure of full-length bacterial SelB from Aquifex aeolicus in complex with GTP analog at 3.2 Å shows three EF-Tu-like domains (D1-3) followed by four WH domains; the Sec-binding site is located at the D1-D2 interface with Arg residues coordinating the Sec moiety, and is smaller and more exposed than EF-Tu's aminoacyl binding site. |
X-ray crystallography at 3.2 Å |
Nucleic acids research |
High |
26304550
|
| 2016 |
Cryo-EM structures of six intermediates on the UGA recoding pathway reveal that: initial SelB-Sec-tRNA(Sec) binding induces 30S open conformation with Sec-tRNA(Sec) covering the sarcin-ricin loop (SRL); codon recognition in the decoding site causes local closure moving Sec-tRNA(Sec) away from the SRL and global 30S shoulder closure; this triggers SelB docking on the SRL, activating its GTPase. |
Single-particle cryo-electron microscopy, six structural intermediates |
Nature |
High |
27842381
|
| 2018 |
Mammalian eEFSec folds into a chalice-like structure with three N-terminal EF-Tu-like domains and a C-terminal domain 4 that binds Sec-tRNA(Sec) and SBP2; GTP hydrolysis does not induce a canonical conformational change but promotes a slight ratchet of domains 1-2 and a lever-like movement of domain 4, which may be critical for Sec-tRNA(Sec) release on the ribosome. |
Structural analysis, biochemical characterization of domain functions (summary/review of published experimental work) |
Biochimica et biophysica acta. General subjects |
Medium |
29555379
|
| 2025 |
Bi-allelic loss-of-function variants in EEFSEC cause reduced EEFSEC function in vitro, leading to lower selenoprotein levels in patient fibroblasts; an eEFSec-RNAi Drosophila model shows progressive motor impairment and synaptic defects, establishing that EEFSEC function is required for selenoprotein synthesis and neuronal maintenance in vivo. |
Patient fibroblast selenoprotein quantification, in vitro functional assays of variants, Drosophila RNAi model with motor and synaptic phenotyping |
American journal of human genetics |
High |
39753114
|
| 2000 |
The bulged nucleotide U17 in the E. coli SECIS upper stem-loop participates in interaction with SelB; suppressor mutations in selB that rescue SECIS bulge mutations map to a 28-amino acid stretch in SelB C-terminal subdomain 4b, identifying this region as the contact interface. |
Genetic suppressor analysis, in vivo UGA readthrough assay, selB sequencing |
Journal of bacteriology |
Medium |
11053373
|
| 1999 |
Genetic analysis of SelB-SECIS interaction identified suppressor mutations in selB that counteract SECIS mutations; four suppressor amino acid exchanges cluster in a 23-amino acid stretch in domain 4b (direct RNA contact sites), and a fifth mutation in domain 4a promotes allele-nonspecific readthrough, suggesting domain 4a modulates communication between tRNA- and mRNA-binding regions. |
In vivo suppressor selection, UGA readthrough assay, selenium incorporation, sequencing |
Molecular & general genetics : MGG |
Medium |
10628863
|
| 2025 |
FOXO1 and STAT3 transcription factors directly bind functional sites in the eefsec promoter (-1070 bp FOXO1 site; -428 bp STAT3 site) and regulate eefsec transcriptional activity in a selenium-dependent manner in yellow catfish. |
Sequential promoter deletion analysis, EMSA, chromatin immunoprecipitation |
Biochimica et biophysica acta. Gene regulatory mechanisms |
Medium |
40618995
|