Affinage

ECHDC2

Enoyl-CoA hydratase domain-containing protein 2, mitochondrial · UniProt Q86YB7

Length
292 aa
Mass
31.1 kDa
Annotated
2026-06-09
14 papers in source corpus 5 papers cited in narrative 5 extracted findings
Cross-family judge faithfulness: 4/4 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

ECHDC2 is a mitochondrial protein linked to branched-chain amino acid and fatty acid metabolism that modulates cellular survival and proliferation across cardiac and cancer contexts (PMID:24108764, PMID:31437751). In cardiomyocytes, ECHDC2 localizes to mitochondria, and its level sets susceptibility to ischemia/reperfusion injury—overexpression sensitizes cells while knockdown confers resistance—accompanied by elevated branched-chain amino acids leucine and valine without measurable changes in oxygen consumption or ATP production (PMID:24108764). In gastric cancer, ECHDC2 binds the E3 ubiquitin ligase NEDD4 and promotes ubiquitination and proteasomal degradation of MCCC2, thereby suppressing P38 MAPK signaling, aerobic glycolysis, and tumor cell proliferation in vitro and in xenografts (PMID:38783226). ECHDC2 is also required for anoikis escape and suspension growth of high-grade serous ovarian cancer cells, consistent with a role downstream of fatty acid metabolism (PMID:31437751). Beyond these contexts and the NEDD4–MCCC2 axis, no enzymatic substrate or structural mechanism for ECHDC2 has been characterized in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 5 steps
  1. 2013 Medium

    Established ECHDC2 as a mitochondrial protein whose abundance bidirectionally controls cardiomyocyte vulnerability to ischemia/reperfusion injury and influences branched-chain amino acid levels.

    Evidence Subcellular fractionation/IHC localization, gain- and loss-of-function with I/R injury assay, and GC-MS metabolomics in cardiomyocytes

    PMID:24108764

    Open questions at the time
    • The enzymatic activity of ECHDC2 on BCAA or fatty acid intermediates was not directly demonstrated
    • Mechanism linking ECHDC2 to I/R susceptibility unresolved despite no change in O2 consumption or ATP
    • No in vivo cardiac model beyond cellular assays
  2. 2019 Medium

    Identified ECHDC2 as a fatty-acid-metabolism effector required for anoikis escape, extending its role from cardiac biology to cancer cell survival in suspension.

    Evidence Genome-wide CRISPR/Cas9 screen with siRNA validation, suspension growth assay, and non-targeted metabolomics in ovarian cancer cells

    PMID:31437751

    Open questions at the time
    • The metabolic substrate of ECHDC2 driving suspension survival was not defined
    • No reciprocal rescue or overexpression to confirm specificity
    • Connection to a defined signaling pathway not established
  3. 2024 Medium

    Defined a molecular mechanism for ECHDC2's tumor-suppressive action: recruitment of NEDD4 to drive MCCC2 degradation, dampening P38 MAPK signaling and aerobic glycolysis.

    Evidence Reciprocal co-immunoprecipitation, ubiquitination and Western assays, glucose/lactate measurements, and subcutaneous xenografts in gastric cancer

    PMID:38783226

    Open questions at the time
    • Whether ECHDC2 directly recruits NEDD4 or acts as an adaptor versus enzyme is not resolved
    • Single lab without independent replication
    • Reconciliation with pro-survival roles in ovarian/glioblastoma contexts not addressed
  4. 2026 Low

    Showed that, in contrast to its gastric tumor-suppressive role, ECHDC2 promotes proliferation and migration of glioblastoma cells, associating it with PI3K/Akt signaling.

    Evidence siRNA knockdown and overexpression with proliferation/migration assays and GSEA/KEGG enrichment in GBM cell lines

    PMID:41732157

    Open questions at the time
    • PI3K/Akt placement rests on bioinformatic enrichment without direct pathway validation
    • Context-dependent opposing roles across cancers mechanistically unexplained
    • No in vivo confirmation
  5. 2025 Low

    Provided correlative in vivo evidence linking ECHDC2 abundance to mitochondrial β-oxidation by showing high-dose vitamin D3 downregulates hepatic ECHDC2.

    Evidence Integrative transcriptomic and quantitative proteomic analysis of pig liver tissue

    PMID:40680899

    Open questions at the time
    • Protein-level change observed without any direct functional test of ECHDC2
    • Causal relationship between vitamin D3 and ECHDC2 not established
    • β-oxidation role inferred, not measured

Open questions

Synthesis pass · forward-looking unresolved questions
  • The direct biochemical activity of ECHDC2 and how it produces opposing proliferative outcomes across tissues remain unknown.
  • No defined catalytic substrate or reaction for ECHDC2
  • Mechanism reconciling tumor-suppressor (gastric) versus pro-tumor (GBM) roles unresolved
  • No structural model or domain-level mechanism of NEDD4/MCCC2 engagement

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0140096 catalytic activity, acting on a protein 1
Localization
GO:0005739 mitochondrion 1
Pathway
R-HSA-1430728 Metabolism 2
Partners

Evidence

Reading pass · 5 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2013 ECHDC2 is a mitochondrial protein expressed in cardiomyocytes but not cardiofibroblasts. Overexpression of ECHDC2 increased susceptibility to ischemia/reperfusion (I/R) injury, while knockdown enhanced resistance to I/R injury. ECHDC2 overexpression increased cellular levels of branched-chain amino acids leucine and valine (measured by GC-MS), but did not alter mitochondrial O2 consumption, metabolic intermediates, or ATP production. Subcellular fractionation/immunohistochemistry for localization; overexpression and knockdown with I/R injury assay; GC-MS metabolite analysis; Western blot; RT-PCR Journal of the American Heart Association Medium 24108764
2024 ECHDC2 binds NEDD4 (E3 ubiquitin ligase) via co-immunoprecipitation, promotes ubiquitination and proteasomal degradation of MCCC2, and thereby suppresses the P38 MAPK pathway, leading to reduced aerobic glycolysis and inhibition of gastric cancer cell proliferation both in vitro and in vivo. Co-immunoprecipitation, Western blotting, immunofluorescence, colony formation, CCK8, EDU, glucose/lactate assays, subcutaneous xenograft in nude mice Molecular medicine (Cambridge, Mass.) Medium 38783226
2019 ECHDC2 knockdown significantly inhibited suspension growth (anoikis escape) of high-grade serous ovarian cancer cells, implicating ECHDC2 as an effector of fatty acid metabolism required for survival in suspension. Genome-wide CRISPR/Cas9 knockout screen followed by targeted siRNA knockdown; suspension growth assay; non-targeted metabolomics iScience Medium 31437751
2026 ECHDC2 knockdown suppressed proliferation and migration of glioblastoma (GBM) cell lines, while overexpression had the opposite effect; enrichment analyses associated ECHDC2 activity with the PI3K/Akt signaling pathway in GBM. siRNA knockdown and overexpression in GBM cell lines; CCK-8, EdU, wound-healing, and Transwell migration assays; GSEA/KEGG pathway enrichment Frontiers in genetics Low 41732157
2025 Very high-dose vitamin D3 supplementation in pigs downregulated ECHDC2 protein levels in liver tissue, consistent with a role for ECHDC2 in mitochondrial β-oxidation pathways. Integrative transcriptomic and proteomic analysis of liver tissue; quantitative proteomics The Journal of steroid biochemistry and molecular biology Low 40680899

Source papers

Stage 0 corpus · 14 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2013 Functional epigenetic approach identifies frequently methylated genes in Ewing sarcoma. Epigenetics 33 24005033
2019 Multi-Omic Approaches Identify Metabolic and Autophagy Regulators Important in Ovarian Cancer Dissemination. iScience 26 31437751
2024 ECHDC2 inhibits the proliferation of gastric cancer cells by binding with NEDD4 to degrade MCCC2 and reduce aerobic glycolysis. Molecular medicine (Cambridge, Mass.) 21 38783226
2013 Enoyl coenzyme a hydratase domain-containing 2, a potential novel regulator of myocardial ischemia injury. Journal of the American Heart Association 17 24108764
2022 Proteomic analysis revealed the pharmacological mechanism of Xueshuantong injection in preventing early acute myocardial infarction injury. Frontiers in pharmacology 8 36618918
2024 Multiomics identification of ALDH9A1 as a crucial immunoregulatory molecule involved in calcific aortic valve disease. Scientific reports 4 39384885
2024 Genome-wide analysis of alternative splicing differences in hepatic ischemia reperfusion injury. Scientific reports 2 39732885
2021 Proteomic consequences of the deletion of cytochrome P450 (CYP450) reductase in mice. Journal of chromatography. B, Analytical technologies in the biomedical and life sciences 2 34218094
2025 Very high-dose vitamin D₃ supplementation reduces the expression of genes and proteins engaged in β-oxidation in healthy pigs. The Journal of steroid biochemistry and molecular biology 1 40680899
2025 Identification of coagulation-related hub genes in ischemic stroke based on bioinformatics integration analysis and investigation of their immune regulatory mechanisms. European journal of medical research 1 41444657
2024 Investigating the Causal Effects of Exercise-Induced Genes on Sarcopenia. International journal of molecular sciences 1 39409102
2020 Exploring allele specific methylation in drug dependence susceptibility. Journal of psychiatric research 1 32917399
2026 Clinical significance and oncogenic role of ECHDC2 in glioblastoma: a comprehensive analysis based on bioinformatics and in vitro experiments. Frontiers in genetics 0 41732157
2025 Investigating the Mechanisms of Mitochondrial Dysfunction in Ischemic Stroke and Predicting Therapeutics Through Machine Learning and Integrated Bioinformatics. Current medicinal chemistry 0 41088987

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