Affinage

DNAJC17

DnaJ homolog subfamily C member 17 · UniProt Q9NVM6

Length
304 aa
Mass
34.7 kDa
Annotated
2026-06-09
14 papers in source corpus 7 papers cited in narrative 7 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 6/6 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

DNAJC17 is a pan-essential HSP40/J-domain co-chaperone that links the HSP70 chaperone system to nuclear pre-mRNA splicing (PMID:37961102, PMID:29773831). It localizes to nuclear speckles and physically associates with spliceosomal/splicing machinery components, where it supports splicing efficiency (PMID:29773831). Its J-domain allosterically activates ATP hydrolysis by HSP70, while its RNA recognition motif (RRM) imposes an auto-inhibitory constraint on this activation; the J-domain alone is both required and sufficient to rescue viability, splicing, and G2-M progression after loss of endogenous protein, whereas the RRM and C-terminal alpha helix are dispensable (PMID:37961102, PMID:42156896). Loss of DNAJC17 causes exon skipping concentrated in cell-cycle genes rather than broad changes in mRNA abundance, deranging G2-M progression and producing cell lethality (PMID:42156896). The protein additionally retains the RNA-binding protein TDP-43 in the nucleus and promotes its liquid-phase behavior, reducing TDP-43 aggregate burden under proteotoxic stress through an HSP70-independent route (PMID:40654997). In mouse, Dnajc17 is essential for early development, with knockout embryos dying before implantation (PMID:20160132).

Mechanistic history

Synthesis pass · year-by-year structured walk · 7 steps
  1. 2008 Medium

    Established the first developmental function for a DNAJC17 orthologue by placing it within canonical Wnt/beta-catenin signaling during early embryogenesis, addressing whether this J-protein had a defined pathway role.

    Evidence Morpholino knockdown with beta-catenin epistasis/rescue and downstream target analysis in Ciona intestinalis embryos

    PMID:18336583

    Open questions at the time
    • Invertebrate orthologue context; relevance to vertebrate/human DNAJC17 unconfirmed
    • Molecular mechanism by which the J-protein acts on Wnt signaling not defined
    • No biochemical link to HSP70 or splicing established here
  2. 2010 Medium

    Showed that mammalian Dnajc17 is essential for early development and a genetic modifier of thyroid phenotypes, establishing organismal requirement before any molecular mechanism was known.

    Evidence Knockout mouse (pre-implantation lethality), thyroid bud expression profiling, and SNP-based modifier mapping of congenital hypothyroidism

    PMID:20160132

    Open questions at the time
    • Lethality precludes definition of tissue-specific function
    • Mechanism connecting Dnajc17 to thyroid gene-dosage phenotypes unknown
    • No molecular activity assigned
  3. 2017 Low

    Tested whether DNAJC17 coding mutations cause human thyroid dysgenesis, addressing the clinical relevance of the mouse modifier findings.

    Evidence HRM and direct sequencing of DNAJC17 coding region in 89 thyroid dysgenesis patients versus controls

    PMID:29159607

    Open questions at the time
    • Negative/null association in a single small cohort; does not exclude rare or regulatory variants
    • No functional testing of the identified variants
    • Cohort size limits statistical power
  4. 2018 High

    Defined a molecular function for DNAJC17 by localizing it to nuclear speckles and tying it to the splicing machinery, the first direct evidence for a role in pre-mRNA splicing.

    Evidence Co-IP, in vivo co-localization with SC35, minigene splicing reporter, and RNAseq upon knockdown in human cells

    PMID:29773831

    Open questions at the time
    • Specific spliceosomal subcomplex/contacts not resolved
    • Mechanistic link between speckle localization and splicing outcomes undefined
    • No connection to chaperone activity made at this stage
  5. 2023 High

    Unified the chaperone and splicing roles by showing DNAJC17 is pan-essential, that its J-domain activates HSP70 ATPase activity, that the RRM auto-inhibits this activity, and that the J-domain alone suffices for viability.

    Evidence JDP-library genetic screen, domain-deletion/rescue, in vitro HSP70 ATPase assay, and RNAseq exon-skipping analysis in human cancer cell lines (preprint)

    PMID:37961102

    Open questions at the time
    • Identity of client proteins handed to HSP70 not determined
    • How J-domain/HSP70 activity mechanistically promotes correct splicing unresolved
    • Structural basis of RRM auto-inhibition not defined
  6. 2025 Medium

    Extended DNAJC17 function to proteostasis of an aggregation-prone RNA-binding protein, showing it retains TDP-43 in the nucleus and suppresses its aggregation independently of HSP70.

    Evidence Systematic overexpression screen of the HSP70 network, TDP-43 aggregation/localization/phase-behavior imaging, and viability assays in human cells (preprint)

    PMID:40654997

    Open questions at the time
    • Single-lab preprint; reciprocal/independent validation pending
    • Molecular basis of HSP70-independent TDP-43 retention undefined
    • Relationship to the J-domain/RRM mechanism not established
  7. 2026 High

    Confirmed and extended the domain-function model in peer review, establishing that the J-domain is required and sufficient to rescue viability, splicing, and G2-M progression while the RRM and C-terminal helix are dispensable.

    Evidence Genetic screen, domain-deletion rescue, in vitro HSP70 ATPase assay, RNAseq exon-skipping, and viability assays in human cancer cell lines

    PMID:42156896

    Open questions at the time
    • Functional role of the auto-inhibitory RRM in vivo unclear given its dispensability for rescue
    • Direct HSP70 clients during splicing not identified
    • Mechanism coupling chaperone activity to exon inclusion unresolved

Open questions

Synthesis pass · forward-looking unresolved questions
  • How HSP70 chaperone activity is mechanistically coupled to correct spliceosome function, and what client proteins DNAJC17 delivers, remain undefined.
  • No HSP70 clients of DNAJC17 identified
  • Structural basis of RRM auto-inhibition and J-domain/HSP70 engagement not solved
  • Reconciliation of essential splicing role with HSP70-independent TDP-43 retention not established

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0003723 RNA binding 2 GO:0098772 molecular function regulator activity 2 GO:0140096 catalytic activity, acting on a protein 2
Localization
GO:0005634 nucleus 2 GO:0005654 nucleoplasm 1
Pathway
R-HSA-392499 Metabolism of proteins 2 R-HSA-8953854 Metabolism of RNA 2 R-HSA-1640170 Cell Cycle 1
Partners

Evidence

Reading pass · 7 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2018 DNAJC17 localizes to nuclear speckles and physically interacts with spliceosomal/splicing machinery components, as validated by co-immunoprecipitation and in vivo co-localization with SC35 (a nuclear speckle marker). DNAJC17 up-regulation enhanced splicing efficiency in a minigene reporter assay, while its knockdown caused genome-wide perturbations in splicing efficiency detected by RNAseq. Co-immunoprecipitation, in vivo co-localization, minigene splicing reporter assay, transcriptomics (RNAseq), proteomics (interactome) Scientific reports High 29773831
2023 DNAJC17 is pan-essential in human cancer cell lines and allosterically activates ATP hydrolysis by HSP70 via its J-domain. The RNA recognition motif (RRM) exerts an auto-inhibitory effect on this J-domain-mediated HSP70 activation. The J-domain alone (without the RRM or C-terminal alpha helix) is sufficient to rescue cell viability after loss of endogenous DNAJC17. DNAJC17 knockdown causes exon skipping predominantly in genes involved in cell cycle progression, leading to deranged G2-M progression. Genetic screen (JDP library in human cancer cell lines), domain-deletion/rescue experiments, HSP70 ATPase activity assay, RNAseq exon-skipping analysis, cell viability assays bioRxiv (preprint)preprint High 37961102
2026 DNAJC17 is pan-essential in human cancer cell lines; its RRM domain exerts an auto-inhibitory effect on J-domain-mediated allosteric activation of HSP70 ATP hydrolysis. The J-domain is required and sufficient to rescue cell viability and restore splicing and G2-M progression after endogenous DNAJC17 loss, while the RRM and C-terminal alpha helix are dispensable for these functions. Knockdown predominantly causes exon skipping in cell-cycle genes rather than broad mRNA abundance changes. Genetic screen, domain-deletion rescue experiments, HSP70 ATPase activity assay (in vitro biochemical assay), RNAseq exon-skipping analysis, cell viability assays Scientific reports High 42156896
2010 Mouse Dnajc17, a type III Hsp40 family member, is highly expressed in the thyroid bud and is essential for early development; knockout mouse embryos die prior to implantation. A nonsynonymous SNP in a conserved region of Dnajc17 was identified as a strain-specific modifier of congenital hypothyroidism in mice heterozygous for Nkx2-1/Titf1 and Pax8 null mutations. Chromosomal mapping, SNP analysis, expression profiling (thyroid bud), knockout mouse (lethal phenotype) Endocrinology Medium 20160132
2008 The Ciona intestinalis orthologue of DNAJC17 (Ci-FLJ10634, encoding a J-protein family member) acts upstream of or parallel to beta-catenin in the canonical Wnt/beta-catenin signaling pathway during early embryogenesis. Morpholino-mediated knockdown suppressed beta-catenin downstream targets (Ci-FoxD, Ci-Lhx3, Ci-Otx, Ci-Fgf9/16/20) and endoderm formation; defects were rescued by constitutively active but not wild-type Ci-beta-catenin, and dosage-sensitive interactions were found. Morpholino knockdown, epistasis (rescue with constitutively active beta-catenin), downstream target gene expression analysis in Ciona embryos Development, growth & differentiation Medium 18336583
2025 Spliceosome-associated DNAJC17 retains TDP-43 in the nucleus and promotes its liquid-phase behavior in human cells, reducing TDP-43 aggregate burden under proteotoxic stress and enhancing cell viability. DNAJC17 was identified as acting independently of HSP70 (unlike most DNAJB family members) in suppressing TDP-43 toxicity. Systematic overexpression screen of Hsp70 network members, TDP-43 aggregation assays, nuclear localization and phase behavior imaging, viability assays in human cells bioRxivpreprint Medium 40654997
2017 Screening of 89 patients with thyroid dysgenesis identified two DNAJC17 coding variants (c.350A>C and c.610G>C); their allele frequencies were not significantly different from controls, providing no evidence that DNAJC17 coding mutations are a frequent cause of thyroid dysgenesis in humans. High-resolution melting analysis (HRM) and direct sequencing of DNAJC17 coding sequence in patient cohort Journal of endocrinological investigation Low 29159607

Source papers

Stage 0 corpus · 14 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2015 Expanding the clinical, allelic, and locus heterogeneity of retinal dystrophies. Genetics in medicine : official journal of the American College of Medical Genetics 99 26355662
2013 Evidence for differential alternative splicing in blood of young boys with autism spectrum disorders. Molecular autism 58 24007566
2010 Colitis locus on chromosome 2 impacting the severity of early-onset disease in mice deficient in GPX1 and GPX2. Inflammatory bowel diseases 29 20872835
2022 Identification of LARS as an essential gene for osteosarcoma proliferation through large-Scale CRISPR-Cas9 screening database and experimental verification. Journal of translational medicine 19 35962451
2018 DNAJC17 is localized in nuclear speckles and interacts with splicing machinery components. Scientific reports 16 29773831
2023 Genome-scale CRISPR-Cas9 knockout screening in nasopharyngeal carcinoma for radiosensitive and radioresistant genes. Translational oncology 15 36739730
2010 A locus on mouse chromosome 2 is involved in susceptibility to congenital hypothyroidism and contains an essential gene expressed in thyroid. Endocrinology 15 20160132
2008 Novel genes involved in canonical Wnt/beta-catenin signaling pathway in early Ciona intestinalis embryos. Development, growth & differentiation 15 18336583
2023 Genome-Wide Association Analysis of Heat Tolerance in F2 Progeny from the Hybridization between Two Congeneric Oyster Species. International journal of molecular sciences 10 38203295
2021 Aflibercept Intervention in Experimental Branch Retinal Vein Occlusion Results in Upregulation of DnaJ Homolog Subfamily C Member 17. Journal of ophthalmology 6 33747556
2017 High-resolution melting analysis (HRM) for mutational screening of Dnajc17 gene in patients affected by thyroid dysgenesis. Journal of endocrinological investigation 4 29159607
2025 Scouring the human Hsp70 network uncovers diverse chaperone safeguards buffering TDP-43 toxicity. bioRxiv : the preprint server for biology 2 40654997
2026 The essential chaperone DNAJC17 activates HSP70 to coordinate RNA splicing and G2-M progression. Scientific reports 1 42156896
2023 The essential chaperone DNAJC17 activates HSP70 to coordinate RNA splicing and G2-M progression. bioRxiv : the preprint server for biology 1 37961102

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