Affinage

DES

Desmin · UniProt P17661

Length
470 aa
Mass
53.5 kDa
Annotated
2026-06-09
100 papers in source corpus 5 papers cited in narrative 5 extracted findings
Cross-family judge vs UniProt: tie faithfulness: 4/4 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

Desmin (DES) is a muscle intermediate filament protein whose network integrity is essential for normal cardiomyocyte structure, and whose disruption underlies a spectrum of cardiomyopathies and cardiac conduction disease (PMID:33478057, PMID:22215463). Multiple disease-causing lesions converge on a common loss-of-normal-filament-network mechanism: the missense variant p.A337P forms cytoplasmic aggregates in SW-13 cells and iPSC-derived cardiomyocytes, linking aggregation to left-ventricular non-compaction cardiomyopathy (PMID:33478057), and an exon-3 splice variant (c.735G>C) producing an in-frame deletion of residues p.D214–E245 likewise yields abnormal cytoplasmic aggregates, whereas the corresponding simple missense change does not, pinpointing the deleted segment as required for proper assembly (PMID:34680517). Desmin function is additionally modulated by phosphorylation of its N-terminal domain: the p.S13F mutation disrupts a phosphorylation site, and impaired PKA/PDE4D compartmentalization caused by a PDE4DIP variant reduces PKA phosphorylation of desmin following isoproterenol stimulation, placing desmin downstream of the PKA/PDE4D signaling axis as a penetrance modifier (PMID:34289528). Founder mutations p.S13F and p.N342D produce fully penetrant cardiac conduction disease and cardiomyopathy with right ventricular involvement (PMID:22215463). Beyond these filament-assembly and phosphorylation findings, no further mechanistic detail has been characterized in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 5 steps
  1. 2004 Medium

    Established whether DES sequence variation segregates with inherited dilated cardiomyopathy in a canine model, testing the gene's causal contribution outside human pedigrees.

    Evidence BAC cloning, FISH mapping, SNP/microsatellite genotyping and haplotype association in a Dobermann DCM family

    PMID:15475165

    Open questions at the time
    • Negative result in one breed does not exclude DES involvement in other models or species
    • No functional or molecular characterization of desmin protein performed
    • Does not address mechanism of any pathogenic variant
  2. 2012 Low

    Demonstrated that specific DES founder mutations cause a fully penetrant clinical syndrome combining cardiac conduction disease and cardiomyopathy with right ventricular involvement, defining the disease phenotype.

    Evidence Clinical phenotyping of p.S13F and p.N342D carriers with genealogy and haplotype analysis

    PMID:22215463

    Open questions at the time
    • Clinical/haplotype study only — no in vitro biochemistry establishing the molecular consequence of either mutation
    • Does not distinguish whether the mutations act through filament disruption, phosphorylation, or another mechanism
    • Penetrance modifiers not identified
  3. 2018 Medium

    Showed that a DES point mutation causes aggregation rather than normal filament formation, establishing a loss-of-normal-network mechanism for LVNC cardiomyopathy.

    Evidence Transfection of desmin-p.A337P into SW-13 cells and iPSC-derived cardiomyocytes with confocal microscopy

    PMID:33478057

    Open questions at the time
    • Single lab; does not quantify dominant-negative versus haploinsufficient contribution
    • No structural model of how p.A337P perturbs assembly
    • Downstream cellular consequences of aggregation not defined
  4. 2021 Medium

    Placed desmin phosphorylation downstream of the PKA/PDE4D signaling axis and identified PDE4DIP as a penetrance modifier, connecting a structural protein defect to a signaling compartment.

    Evidence Whole exome sequencing of kindreds plus in vitro assays showing reduced PDE4DIP/PDE4D colocalization, elevated cAMP/PKA, and decreased PKA phosphorylation of desmin after isoproterenol

    PMID:34289528

    Open questions at the time
    • Functional consequence of altered desmin phosphorylation on filament behavior not directly measured
    • Single lab; epistasis based on one PDE4DIP variant
    • PKC site disruption by p.S13F not functionally dissected from PKA effects
  5. 2021 Medium

    Demonstrated that an in-frame exon-3 deletion, but not a corresponding missense change, drives aggregation, mapping a specific desmin segment required for proper network assembly.

    Evidence Nanopore amplicon sequencing of explanted myocardium, Western blot, and transfection with confocal microscopy comparing truncated desmin to p.E245D

    PMID:34680517

    Open questions at the time
    • Single lab; aggregation assessed in cell culture rather than patient cardiomyocytes
    • Mechanism by which residues p.D214–E245 stabilize assembly not resolved at structural level
    • Heterozygous dominant effect on wild-type desmin not quantified

Open questions

Synthesis pass · forward-looking unresolved questions
  • How desmin filament disruption mechanistically produces cardiac conduction disease and the distinct cardiomyopathy subtypes, and how phosphorylation state controls assembly in vivo, remain unresolved.
  • No structural model linking specific mutations to filament assembly defects
  • Causal chain from aggregation to conduction disease and contractile failure not established
  • In vivo role of PKA/PDE4D-regulated desmin phosphorylation not demonstrated

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0005198 structural molecule activity 2
Localization
GO:0005829 cytosol 2 GO:0005856 cytoskeleton 1
Pathway
R-HSA-397014 Muscle contraction 2 R-HSA-162582 Signal Transduction 1
Partners

Evidence

Reading pass · 5 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2018 DES mutations cause severe filament assembly defects in desmin intermediate filaments; the specific mutation desmin-p.A337P forms cytoplasmic aggregates when transfected into SW-13 cells and in cardiomyocytes derived from induced pluripotent stem cells, establishing a pathogenic loss-of-normal-filament-network mechanism for LVNC cardiomyopathy. Cell transfection experiments in SW-13 cells and iPSC-derived cardiomyocytes combined with confocal microscopy Genes Medium 33478057
2021 The DES mutation p.S13F disrupts a PKC phosphorylation site on desmin; epistasis experiments showed that a PDE4DIP mutation (p.A123T) modifies penetrance by impairing PKA/PDE4D compartmentalization, reducing PKA phosphorylation of desmin after isoproterenol stimulation, placing desmin phosphorylation downstream of the PKA/PDE4D signaling axis. Whole exome sequencing of kindreds combined with in vitro characterization of PDE4DIP mutant showing reduced colocalization with PDE4D, increased cAMP/PKA activation, and decreased PKA phosphorylation of desmin Human mutation Medium 34289528
2021 The heterozygous DES splice-site mutation c.735G>C causes in-frame skipping of exon 3, producing a truncated desmin lacking residues p.D214-E245. The truncated protein forms abnormal cytoplasmic aggregates (but the missense variant p.E245D does not), establishing that exon-3 deletion disrupts normal desmin network assembly. Nanopore amplicon sequencing of explanted myocardial tissue, Western blot, and cell culture transfection with confocal microscopy Biomedicines Medium 34680517
2004 Canine desmin (DES) gene was isolated, its chromosomal location determined by FISH, and SNPs/microsatellite markers identified; haplotype analysis in a Dobermann DCM family showed no association between DES haplotype and disease, indicating DES mutations do not cause DCM in this breed (negative result). BAC cloning, FISH chromosomal mapping, SNP genotyping, haplotype association analysis Gene Medium 15475165
2012 DES founder mutations p.S13F and p.N342D in desmin cause fully penetrant cardiac phenotypes characterized by cardiac conduction disease and cardiomyopathy with right ventricular involvement; haplotype analysis confirmed founder effects for both mutations. Clinical phenotyping of mutation carriers, genealogy and haplotype analysis Netherlands heart journal Low 22215463

Source papers

Stage 0 corpus · 100 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2000 Ghrelin and des-acyl ghrelin: two major forms of rat ghrelin peptide in gastrointestinal tissue. Biochemical and biophysical research communications 756 11162448
1998 Abdominal B (AbdB) Hoxa genes: regulation in adult uterus by estrogen and progesterone and repression in müllerian duct by the synthetic estrogen diethylstilbestrol (DES). Developmental biology 237 9630742
2010 In utero exposure to diethylstilbestrol (DES) or bisphenol-A (BPA) increases EZH2 expression in the mammary gland: an epigenetic mechanism linking endocrine disruptors to breast cancer. Hormones & cancer 230 21761357
2012 Mechanisms in endocrinology: Ghrelin: the differences between acyl- and des-acyl ghrelin. European journal of endocrinology 197 22898499
2007 Ghrelin and des-acyl ghrelin promote differentiation and fusion of C2C12 skeletal muscle cells. Molecular biology of the cell 170 17202410
1996 Geographic distribution and epidemiology of peste des petits ruminants virus. Virus research 167 8864204
2002 Recent epidemiology of peste des petits ruminants virus (PPRV). Veterinary microbiology 158 12135634
2003 Cardiac effects of ghrelin and its endogenous derivatives des-octanoyl ghrelin and des-Gln14-ghrelin. European journal of pharmacology 151 12969753
2008 Ghrelin, des-acyl ghrelin and obestatin: three pieces of the same puzzle. Peptides 148 18396350
2001 Bradykinin and des-Arg(9)-bradykinin metabolic pathways and kinetics of activation of human plasma. American journal of physiology. Heart and circulatory physiology 147 11406494
2003 The chemoattractant receptor-like protein C5L2 binds the C3a des-Arg77/acylation-stimulating protein. The Journal of biological chemistry 140 12540846
1984 Activation of protein formation and cell division by bradykinin and des-Arg9-bradykinin. The Journal of biological chemistry 127 6430899
2018 Molecular insights into cardiomyopathies associated with desmin (DES) mutations. Biophysical reviews 114 29926427
2004 Transgenic mice overexpressing des-acyl ghrelin show small phenotype. Endocrinology 111 15471959
2004 Des-gamma-carboxy prothrombin is a potential autologous growth factor for hepatocellular carcinoma. The Journal of biological chemistry 111 15582995
1975 Structure-function relationships in glucagon: properties of highly purified des-His-1-, monoiodo-, and (des-Asn-28, Thr-29)(homoserine lactone-27)-glucagon. Biochemistry 110 164891
2007 The threat of peste des petits ruminants: progress in vaccine development for disease control. Vaccine 108 17399862
1990 Plasma des-gamma-carboxyprothrombin in the early stage of hepatocellular carcinoma. Hepatology (Baltimore, Md.) 107 2155866
2013 Des-acyl ghrelin: a metabolically active peptide. Endocrine development 88 23652397
2004 Estrogen receptor-alpha mediates the detrimental effects of neonatal diethylstilbestrol (DES) exposure in the murine reproductive tract. Toxicology 87 15458790
1995 Teratogen update: carcinogenesis and teratogenesis associated with exposure to diethylstilbestrol (DES) in utero. Teratology 86 7502243
1981 Rat angiotensinogen and des(angiotensin I)angiotensinogen: purification, characterization, and partial sequencing. Biochemistry 85 6797467
2013 Diagnosis and control of peste des petits ruminants: a comprehensive review. Virusdisease 83 24426309
2005 A genetic screen for top3 suppressors in Saccharomyces cerevisiae identifies SHU1, SHU2, PSY3 and CSM2: four genes involved in error-free DNA repair. Genetics 83 15654096
1986 Studies of the digestion of bradykinin, Lys-bradykinin, and des-Arg9-bradykinin by angiotensin converting enzyme. Biochemical pharmacology 82 3013204
2006 Cardioprotective effects of ghrelin and des-octanoyl ghrelin on myocardial injury induced by isoproterenol in rats. Acta pharmacologica Sinica 79 16626506
2006 Effects of ghrelin and des-acyl ghrelin on neurogenesis of the rat fetal spinal cord. Biochemical and biophysical research communications 77 17026962
1983 Diethylstilbestrol (DES) quinone: a reactive intermediate in DES metabolism. Biochemical pharmacology 76 6661246
2010 Des-acyl ghrelin has specific binding sites and different metabolic effects from ghrelin in cardiomyocytes. Endocrinology 74 20410201
1981 Clear cell adenocarcinoma and the current status of DES-exposed females. Cancer 74 7272973
2016 Volasertib Versus Chemotherapy in Platinum-Resistant or -Refractory Ovarian Cancer: A Randomized Phase II Groupe des Investigateurs Nationaux pour l'Etude des Cancers de l'Ovaire Study. Journal of clinical oncology : official journal of the American Society of Clinical Oncology 70 26755507
2006 Angiogenesis and cancer: A cross-talk between basic science and clinical trials (the "do ut des" paradigm). Critical reviews in oncology/hematology 69 16600618
2010 Cancer risk in DES daughters. Cancer causes & control : CCC 67 20204493
2005 The history of DES, lessons to be learned. Pharmacy world & science : PWS 66 16096877
2007 Des-gamma-carboxyl prothrombin-promoted vascular endothelial cell proliferation and migration. The Journal of biological chemistry 61 17255102
2014 Should we consider des-acyl ghrelin as a separate hormone and if so, what does it do? Frontiers of hormone research 60 24732934
2010 Hypoxia-induced des-gamma-carboxy prothrombin production in hepatocellular carcinoma. International journal of oncology 57 19956845
1989 Histologic, morphometric, and immunocytochemical analysis of myometrial development in rats and mice: II. Effects of DES on development. The American journal of anatomy 53 2782287
1975 Synthesis and evaluation of (Des-Asp1)angiotensin I as a precursor for (Des-Asp1)angiotensin II ("Angiotensin III"). Journal of medicinal chemistry 51 172631
2015 Crystal structure of the Csm1 subunit of the Csm complex and its single-stranded DNA-specific nuclease activity. Structure (London, England : 1993) 50 25773141
2007 Interactions of diethylstilbestrol (DES) and DES analogs with membrane progestin receptor-alpha and the correlation with their nongenomic progestin activities. Endocrinology 46 17446184
2014 Early changes in cytokine expression in peste des petits ruminants disease. Veterinary research 45 24559207
2019 Autophagy induction by the pathogen receptor NECTIN4 and sustained autophagy contribute to peste des petits ruminants virus infectivity. Autophagy 44 31318632
1996 Effects of captopril and Icatibant on bradykinin (BK) and des [Arg9] BK in carrageenan-induced edema. Peptides 42 8899821
2019 Second Messenger cA4 Formation within the Composite Csm1 Palm Pocket of Type III-A CRISPR-Cas Csm Complex and Its Release Path. Molecular cell 40 31326272
2017 The GATA-Type Transcription Factor Csm1 Regulates Conidiation and Secondary Metabolism in Fusarium fujikuroi. Frontiers in microbiology 39 28694801
1983 Biological activities and receptor interactions of des-Leu16 salmon and des-Phe16 human calcitonin. Endocrinology 35 6299689
1995 Recent developments in the diagnosis of rinderpest and peste des petits ruminants. Veterinary microbiology 33 8588326
1999 Isolation of csm1 encoding a class V chitin synthase with a myosin motor-like domain from the rice blast fungus, Pyricularia oryzae. FEMS microbiology letters 32 9919661
2021 Effects of Des-acyl Ghrelin on Insulin Sensitivity and Macrophage Polarization in Adipose Tissue. Journal of translational internal medicine 31 34497748
2017 Peste des petits ruminants infection in domestic ruminants in Sudan. Tropical animal health and production 31 28321790
2019 Camelids and Cattle Are Dead-End Hosts for Peste-des-Petits-Ruminants Virus. Viruses 30 31817946
2013 Monopolin subunit Csm1 associates with MIND complex to establish monopolar attachment of sister kinetochores at meiosis I. PLoS genetics 30 23861669
2013 Staphylococcus epidermidis Csm1 is a 3'-5' exonuclease. Nucleic acids research 30 24121684
2012 Central and peripheral des-acyl ghrelin regulates body temperature in rats. Biochemical and biophysical research communications 29 23159626
2011 The endocrine disruptors dibutyl phthalate (DBP) and diethylstilbestrol (DES) influence Leydig cell regeneration following ethane dimethane sulphonate treatment of adult male rats. International journal of andrology 29 22150342
1988 Effects of postnatal DES treatment on uterine growth, development, and estrogen receptor levels. Journal of steroid biochemistry 29 3379960
2007 Reverse genetics for peste-des-petits-ruminants virus (PPRV): promoter and protein specificities. Virus research 28 17350130
2021 The Desmin (DES) Mutation p.A337P Is Associated with Left-Ventricular Non-Compaction Cardiomyopathy. Genes 26 33478057
2003 Simulation of the different biological activities of diethylstilbestrol (DES) on estrogen receptor alpha and estrogen-related receptor gamma. Biopolymers 26 12579585
2019 Thromboresistance and functional healing in the COBRA PzF stent versus competitor DES: implications for dual antiplatelet therapy. EuroIntervention : journal of EuroPCR in collaboration with the Working Group on Interventional Cardiology of the European Society of Cardiology 24 30375338
2023 Salicylic acid attenuates brassinosteroid signaling via protein de-S-acylation. The EMBO journal 23 37211868
2018 DNA methylation and transcriptome aberrations mediated by ERα in mouse seminal vesicles following developmental DES exposure. Proceedings of the National Academy of Sciences of the United States of America 23 29666266
2021 The Desmin Mutation DES-c.735G>C Causes Severe Restrictive Cardiomyopathy by Inducing In-Frame Skipping of Exon-3. Biomedicines 22 34680517
2018 Epidemiology and genetic characterization of Peste des petits ruminants virus in Bangladesh. Veterinary medicine and science 22 29663718
2009 Significance of des-gamma-carboxy prothrombin production in hepatocellular carcinoma. Acta medica Okayama 22 20035286
2003 Inhibition of angiogenesis: a new function for angiotensinogen and des(angiotensin I)angiotensinogen. Current hypertension reports 22 12642015
2017 Comparative evaluation of three capripoxvirus-vectored peste des petits ruminants vaccines. Virology 20 29197721
2012 Regulation of gastroduodenal motility: acyl ghrelin, des-acyl ghrelin and obestatin and hypothalamic peptides. Digestion 20 22269285
2000 Abnormal cell differentiation and p21 expression of endometrial epithelial cells following developmental exposure to diethylstilbestrol (DES). Toxicologic pathology 20 10805141
1993 Diethylstilbestrol (DES) and breast cancer. Epidemiologic reviews 20 8405194
2020 Paradigm shift in the diagnosis of peste des petits ruminants: scoping review. Acta veterinaria Scandinavica 19 31996243
2019 Peste des petits ruminants pathogenesis on experimental infected goats by the Moroccan 2015 isolate. BMC veterinary research 19 31842890
2016 Roles and Signaling Pathways of Des-γ-Carboxyprothrombin in the Progression of Hepatocellular Carcinoma. Cancer investigation 19 27673353
2012 Recurrent and founder mutations in the Netherlands: the cardiac phenotype of DES founder mutations p.S13F and p.N342D. Netherlands heart journal : monthly journal of the Netherlands Society of Cardiology and the Netherlands Heart Foundation 19 22215463
2011 Ghrelin, des-acyl ghrelin and obestatin on the gastrointestinal motility. Peptides 19 21835213
2010 The Lrs4-Csm1 monopolin complex associates with kinetochores during anaphase and is required for accurate chromosome segregation. Cell cycle (Georgetown, Tex.) 19 20818155
2003 Diethylstilbestrol (DES) update: recommendations for the identification and management of DES-exposed individuals. Journal of midwifery & women's health 19 12589302
1981 des-Asp-angiotensin I: its identification in rat blood and confirmation as a substrate for converting enzyme. Endocrinology 19 6256150
2004 Characterization of the canine desmin (DES) gene and evaluation as a candidate gene for dilated cardiomyopathy in the Dobermann. Gene 18 15475165
2022 Peste des Petits Ruminants Virus Upregulates STING to Activate ATF6-Mediated Autophagy. Journal of virology 17 36197111
2021 Epistatic interaction of PDE4DIP and DES mutations in familial atrial fibrillation with slow conduction. Human mutation 17 34289528
2016 Molecular Evolution and Characterization of Hemagglutinin (H) in Peste des Petits Ruminants Virus. PloS one 17 27035347
2008 Des-gamma-carboxyprothrombin: clinical effectiveness and biochemical importance. Bioscience trends 17 20103901
2023 Hydrophobic DES Based on Menthol and Natural Organic Acids for Use in Antifouling Marine Coatings. ACS sustainable chemistry & engineering 16 37448722
2022 Peste des petits ruminants virus induces ERS-mediated autophagy to promote virus replication. Veterinary microbiology 16 35594636
2021 Molecular epidemiology of peste des petits ruminants virus in Nigeria: An update. Transboundary and emerging diseases 16 33728807
2016 Structure of Csm2 elucidates the relationship between small subunits of CRISPR-Cas effector complexes. FEBS letters 16 27091242
2018 The curse of angiopoietin-2 in ARDS: on stranger TI(E)des. Critical care (London, England) 15 29477144
2012 The stearoyl-acyl-carrier-protein desaturase promoter (Des) from oil palm confers fruit-specific GUS expression in transgenic tomato. Journal of plant physiology 15 22658816
1997 Mycobacterium tuberculosis Des protein: an immunodominant target for the humoral response of tuberculous patients. Infection and immunity 15 9199463
1996 Effect of neonatal exposure to DES in Fas and Bcl-2 expression in the adult mouse vagina and approach to the DES syndrome. Reproductive toxicology (Elmsford, N.Y.) 15 8946560
2022 Comparative pathogenesis of peste des petits ruminants virus strains of difference virulence. Veterinary research 14 35804440
2018 Binding to small ubiquitin-like modifier and the nucleolar protein Csm1 regulates substrate specificity of the Ulp2 protease. The Journal of biological chemistry 14 29903909
2013 Association of plasma des-acyl ghrelin levels with CKD. Clinical journal of the American Society of Nephrology : CJASN 14 23744005
1981 Role of hormones including diethylstibestrol (DES) in the pathogenesis of cervical and vaginal intraepithelial neoplasia. Gynecologic oncology 14 7030882
2015 Des-γ-carboxyprothrombin (DCP) and NX-DCP expressions and their relationship with clinicopathological features in hepatocellular carcinoma. PloS one 13 25739032
2015 Des-aspartate-angiotensin I, a novel angiotensin AT(1) receptor drug. European journal of pharmacology 13 25891368
2021 Heterozygous desmin gene (DES) mutation contributes to familial dilated cardiomyopathy. The Journal of international medical research 12 33823640
2004 Saccharomyces cerevisiae CSM1 gene encoding a protein influencing chromosome segregation in meiosis I interacts with elements of the DNA replication complex. Experimental cell research 12 15023545

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