| 2002 |
DcpS was identified as a scavenger mRNA decapping pyrophosphatase that specifically hydrolyzes methylated cap analog (m7GpppN) but not unmethylated cap analog and does not act on intact capped RNA. The central histidine within the HIT motif is critical for decapping activity, defining DcpS as the first HIT-family member with a defined biological function. |
Protein purification from mammalian cells, recombinant protein expression, in vitro decapping assays with cap analogs, site-directed mutagenesis of HIT motif histidines |
The EMBO journal |
High |
12198172
|
| 2003 |
DcpS can also function in the 5'-3' mRNA decay pathway by converting m7GDP (the product of Dcp2 decapping) to m7GMP, in addition to its established role in the 3'-5' pathway. This activity was identified in both yeast and human, making m7GMP a general pathway-independent by-product of eukaryotic mRNA decay. |
In vitro decapping assays in human cell extracts and yeast, biochemical identification of reaction intermediates and products, fractionation to identify the responsible factor as DcpS |
Proceedings of the National Academy of Sciences of the United States of America |
High |
14523240
|
| 2005 |
Crystal structures of human DcpS in ligand-free and m7GDP-bound forms revealed that apo-DcpS is a symmetric dimer, while cap-analog-bound DcpS is an asymmetric dimer with one site open and one closed. Tyr273 in the cap-binding pocket undergoes conformational changes upon cap binding and plays an important role in cap binding and product release, as demonstrated by mutagenesis. |
X-ray crystallography, site-directed mutagenesis, biochemical decapping assays |
Journal of molecular biology |
High |
15769464
|
| 2008 |
DcpS is a nucleocytoplasmic shuttling protein containing separable nuclear import and CRM1-dependent export signals. Reduction of DcpS levels via shRNA impaired cap-proximal intron splicing of reporter and endogenous genes. DcpS efficiently displaced the nuclear cap-binding protein Cbp20 from cap structure, and complementation with Cbp20 reversed the splicing defect, indicating DcpS modulates splicing through Cbp20. |
shRNA knockdown, immunofluorescence, nuclear import/export signal mapping, in vitro cap-binding displacement assays, reporter splicing assays, rescue by Cbp20 complementation |
RNA (New York, N.Y.) |
High |
18426921
|
| 2008 |
DcpS inhibition by C5-substituted quinazolines holds the enzyme in an open, catalytically incompetent conformation. These compounds potently inhibit DcpS decapping activity with potency correlating with SMN2 promoter induction. DcpS was identified as the binding target using protein microarray scanning with a radiolabeled quinazoline probe. |
Protein microarray binding with radiolabeled probe, in vitro DcpS decapping activity assays, structural analysis of inhibitor-bound conformation |
ACS chemical biology |
High |
18839960
|
| 2008 |
Transient state kinetic studies established that DcpS has a dynamic and mutually exclusive cap hydrolysis activity at the two cap binding sites of its dimer. The rate-limiting step and rate of decapping are regulated by cap substrate concentration; decapping is highly efficient at low cap substrate concentrations but regulated (slowed) with excess substrate, reflecting the domain-swapped dimeric architecture. |
Transient state kinetic analysis (stopped-flow), mechanistic interpretation based on structural data |
The Journal of biological chemistry |
High |
18441014
|
| 2013 |
The C. elegans DcpS ortholog DCS-1 interacts with the 5'-3' exonuclease XRN-1 to promote microRNA degradation in a manner independent of its decapping scavenger activity, establishing two distinct molecular functions for DCS-1. Loss of dcs-1 increases functional microRNA levels. |
Genetic analysis in C. elegans (dcs-1 mutants), protein interaction studies, microRNA level measurements, functional assays separating decapping from XRN-1 cofactor activity |
Molecular cell |
High |
23541767
|
| 2015 |
Human DcpS conserves a role in miRNA turnover, functioning as a nucleocytoplasmic shuttling protein that activates miRNA degradation independently of its scavenger decapping activity in the cytoplasmic compartment. This function requires the 5'-3' exonuclease Xrn2. |
DcpS knockdown in human cells, miRNA level measurements, subcellular fractionation, decapping-dead mutant analysis to separate functions, Xrn2 co-dependency assays |
Scientific reports |
Medium |
26584588
|
| 2015 |
Loss-of-function mutations in DCPS (splice site and missense variants) abolish decapping activity as shown by in vitro decapping assays with m7G cap derivatives, establishing that DCPS enzymatic activity is required for normal neurological development and cognition in humans. |
Patient cells with homozygous DCPS mutations, in vitro decapping assays using m7G cap derivatives as substrates |
Human molecular genetics |
High |
25701870 25712129
|
| 2015 |
DcpS, in conjunction with Xrn1, regulates RNA stability in a transcript-selective manner in mammalian cells. Two long non-coding RNAs (DRNT1 and DRNT2) were identified as DcpS-responsive transcripts; DRNT1 stability increased upon DcpS inhibition (RG3039) in a manner dependent on both DcpS catalytic activity and Xrn1. |
DcpS inhibitor treatment (RG3039), global mRNA profiling, targeted RNA stability assays, catalytic mutant complementation, Xrn1 knockdown co-dependence |
RNA (New York, N.Y.) |
Medium |
26001796
|
| 2018 |
DCPS interacts with components of pre-mRNA metabolic pathways including spliceosomes, as revealed by mass spectrometry co-immunoprecipitation in AML cells. DCPS inhibition (RG3039) induces pre-mRNA mis-splicing, contributing to anti-leukemic activity. |
Genome-wide CRISPR-Cas9 screen, mass spectrometry after co-immunoprecipitation to identify DCPS interactors, RG3039 treatment with transcriptomic analysis of splicing changes |
Cancer cell |
Medium |
29478914
|
| 2020 |
DcpS only processes mRNA fragments shorter than three nucleotides. Using NMR (methyl-TROSY) and X-ray crystallography, steric clashes between the enzyme and the third nucleotide of capped mRNA prevent conformational changes required for a catalytically competent active site. Point mutations enlarging the space for the third nucleotide enhance activity on longer substrates. This substrate length-sensing mechanism is conserved from yeast to humans. |
Methyl-TROSY NMR spectroscopy, X-ray crystallography, site-directed mutagenesis, in vitro enzymatic assays with substrates of varying length |
Proceedings of the National Academy of Sciences of the United States of America |
High |
32723815
|
| 2022 |
DcpS is required for radial migration, polarity, neurite outgrowth, and identity of developing glutamatergic neurons in the mouse neocortex, as shown by loss-of-function studies. Human neurons derived from DcpS mutation patients showed compromised differentiation and neurite outgrowth. |
In utero electroporation knockdown in mouse neocortex, patient-derived human neurons, morphological and marker analysis |
Cerebral cortex (New York, N.Y. : 1991) |
Medium |
34467373
|
| 2025 |
DcpS loss reduces P-body integrity, and reducing DCPS in human neurons with TDP-43 loss-of-function restores P-body function and RNA turnover, improving neuronal survival. TDP-43 LOF hyperactivates P-bodies, increasing mRNA association and RNA decay, and DCPS acts as a genetic modifier of this pathway. |
CRISPRi screening in human neurons, P-body imaging, RNA decay assays, neuronal survival measurements |
Neuron |
Medium |
41943580
|
| 2025 |
DcpS mutant patient-derived cells harbor creatine deficiency and elevated guanidinoacetate (GAA) due to reduced mRNA and protein levels of guanidinoacetate methyltransferase (GAMT). Creatine supplementation reversed compromised neurogenesis and neurite outgrowth during differentiation of DcpS mutant iPSCs into neurons. |
Metabolomics of patient-derived cells, iPSC differentiation assays, creatine supplementation rescue experiments, GAMT mRNA/protein quantification |
Scientific reports |
Medium |
40410278
|
| 2014 |
In yeast and human extracts, m7GpppN cap dinucleotides can be degraded through a pathway involving DcpS together with Aph1/FHIT. DcpS acts in concert with NTPs and nucleoside diphosphate kinase for m7GDP elimination, establishing a complete cap catabolism pathway. |
In vitro biochemical assays in yeast and human extracts, identification and characterization of Aph1/FHIT as a new scavenger decapping enzyme, pathway reconstitution |
Nucleic acids research |
Medium |
25432955
|
| 2003 |
C. elegans DCS-1 is a member of the Hint branch of the histidine triad superfamily of nucleotide hydrolases with low micromolar specificity for 7-methylguanosine ribonucleotides; trimethylated G substrates are poor competitors. DCS-1 localizes to the nucleus and a perinuclear structure and binds to and directly modulates the activity of the flavin reductase NR1. |
Novel fluorescent substrate assay (7meGpppBODIPY), enzyme kinetics, co-immunoprecipitation, immunocytochemistry in COS cells |
The Journal of biological chemistry |
Medium |
12871939
|
| 2022 |
A PROTAC (JCS-1) that recruits VHL E3 ligase to DcpS causes potent, rapid, and sustained DcpS protein degradation at nanomolar concentrations in AML cell lines, validating DcpS as a druggable target whose depletion is anti-proliferative in AML. |
PROTAC design, western blot for DcpS degradation, cell viability assays in AML lines |
ACS chemical biology |
Low |
35749470
|