Affinage

CSN2

COP9 signalosome complex subunit 2 · UniProt P61201

Length
443 aa
Mass
51.6 kDa
Annotated
2026-06-09
56 papers in source corpus 7 papers cited in narrative 7 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 6/6 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

CSN2 (COPS2/Trip15/Alien) is an essential subunit of the COP9 signalosome (CSN) that controls protein turnover and transcriptional programs across embryonic development, differentiation, and cancer (PMID:12972599, PMID:12522100). As a structural component of the intact CSN complex, CSN2 is required for SCF-cullin-dependent ubiquitin-proteasome degradation: its loss in mice disrupts the CSN, causes drastic accumulation of cyclin E and elevation of p53 and p21, arresting proliferation in the inner cell mass and producing peri-implantation lethality (PMID:12972599). Consistent with a link to the proteolytic machinery, the Drosophila ortholog Alien/CSN2 binds the 19S proteasome lid subunit Rpn6 through its PCI domain (PMID:12426099). CSN2 also scaffolds a CSN-associated kinase activity: it interacts directly with the transcription factor ICSBP via the IRF association domain and directs its phosphorylation, which is required for ICSBP-IRF-1 association and transcriptional repression (PMID:10991940). In neuronal differentiation, CSN2 promotes nuclear translocation of the co-repressor Nif3l1 and downregulates Oct-3/4 while inducing the neurogenic genes Brn-2 and Mash-1, and is itself sufficient to drive P19 cells toward a neuronal fate (PMID:12522100, PMID:12524175). In cancer, CSN2 is transcriptionally induced downstream of NF-κB, where it stabilizes Snail and modulates GSK-3β to promote epithelial-mesenchymal transition and metastasis (PMID:28423737, PMID:26942699).

Mechanistic history

Synthesis pass · year-by-year structured walk · 6 steps
  1. 2000 High

    Established that CSN2 is not only a structural subunit but a docking platform coupling CSN-associated kinase activity to a transcription factor, defining a mechanism by which the complex regulates gene expression beyond proteolysis.

    Evidence Yeast two-hybrid, GST pull-down, co-IP in COS7, and in vitro kinase assay with phosphosite mutagenesis of ICSBP

    PMID:10991940

    Open questions at the time
    • The identity of the CSN-associated kinase that phosphorylates ICSBP is not resolved
    • Whether this kinase scaffolding occurs within the intact eight-subunit CSN or via free CSN2 is not addressed
  2. 2002 Medium

    Linked CSN2 to the 26S proteasome by identifying a direct PCI-domain interaction with the 19S lid subunit Rpn6, suggesting physical coupling between the CSN and degradation machinery.

    Evidence Yeast two-hybrid with Alien/CSN2 bait and overlapping developmental expression analysis in Drosophila

    PMID:12426099

    Open questions at the time
    • Y2H interaction lacks in vivo co-IP confirmation
    • Functional consequence of the CSN2-Rpn6 interaction was not tested
    • Conservation of the interaction in mammals not established
  3. 2003 High

    Demonstrated that CSN2 actively drives neuronal differentiation by partnering with the co-repressor Nif3l1 and reprogramming a transcriptional fate decision, extending CSN2 function into developmental gene control.

    Evidence Y2H, GST pull-down, co-IP, reporter assays, and gain/loss-of-function in retinoic-acid-treated P19 cells, plus neuronal nuclear localization in rat CNS

    PMID:12522100 PMID:12524175

    Open questions at the time
    • Whether neuronal differentiation requires the intact CSN or CSN2 alone is unresolved
    • Mechanism connecting Nif3l1 repression to Oct-3/4 downregulation is not defined
  4. 2003 High

    Established CSN2's organismal essentiality and its mechanistic basis, showing the intact CSN is required to maintain SCF-driven turnover of cyclin E and proliferation control during early embryogenesis.

    Evidence Targeted Csn2 knockout mouse with blastocyst outgrowth assay and Western blotting for cyclin E, p53, p21, and CSN integrity

    PMID:12972599

    Open questions at the time
    • Direct enzymatic role of CSN2 in cullin deneddylation not assayed
    • Which downstream phenotype (cyclin E vs p53/p21 accumulation) is causal for lethality not separated
  5. 2017 Medium

    Placed CSN2 in an oncogenic signaling axis, showing it is induced downstream of NF-κB and stabilizes Snail to drive EMT and metastasis.

    Evidence RMP/CSN2 overexpression and knockdown in HCC cells, migration/invasion assays, NF-κB reporters, and a pulmonary metastasis mouse model

    PMID:28423737

    Open questions at the time
    • Mechanism by which CSN2 represses Snail degradation not defined at the ligase level
    • Single-lab study without independent replication
  6. 2016 Medium

    Generalized the NF-κB/CSN2 axis to colon cancer, implicating CSN2 in modulation of GSK-3β to promote cell cycle progression, invasion, and EMT.

    Evidence DDA1 gain/loss-of-function in colon cancer cells with EMT/proliferation assays, Western blotting for p65/CSN2/GSK-3β, and in vivo tumor growth

    PMID:26942699

    Open questions at the time
    • Direct biochemical link between CSN2 and GSK-3β not demonstrated
    • Single-lab study without independent replication

Open questions

Synthesis pass · forward-looking unresolved questions
  • Whether CSN2 itself contributes catalytically to CSN deneddylase activity, versus serving purely as a structural and kinase-scaffolding subunit, remains unresolved.
  • No structural model of CSN2 within the human CSN in the corpus
  • No direct assay of CSN2 contribution to cullin deneddylation
  • Identity of the CSN2-associated kinase remains unknown

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060090 molecular adaptor activity 2 GO:0005198 structural molecule activity 1
Localization
GO:0005634 nucleus 2
Pathway
R-HSA-1266738 Developmental Biology 2 R-HSA-1643685 Disease 2 R-HSA-392499 Metabolism of proteins 1
Complex memberships
COP9 signalosome

Evidence

Reading pass · 7 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2003 Targeted disruption of Csn2 in mice disrupts the intact COP9 signalosome (CSN) complex, causes drastic accumulation of cyclin E (consistent with loss of SCF-ubiquitin-proteasome-mediated protein turnover), and elevates p53 and p21 levels, resulting in cell proliferation arrest in the inner cell mass and early embryonic lethality at the peri-implantation stage. Csn2 knockout mouse (targeted gene disruption); blastocyst outgrowth assay; Western blotting for cyclin E, p53, p21, and CSN complex integrity; Oct4 immunostaining Molecular and cellular biology High 12972599
2000 CSN2 (Trip15) directly interacts with the interferon consensus sequence-binding protein ICSBP via its IRF association domain (IAD), and this association with the CSN complex leads to phosphorylation of ICSBP at a unique serine residue within its IAD; this phosphorylated residue is required for efficient ICSBP association with IRF-1 and for ICSBP-mediated transcriptional repression of IRF-1. Yeast two-hybrid screen (ICSBP-IAD bait vs. B-cell cDNA library); GST pull-down assay (in vitro); co-immunoprecipitation in COS7 cells; in vitro kinase assay (CSN-associated kinase phosphorylating ICSBP); site-directed mutagenesis of phosphorylation site The Journal of biological chemistry High 10991940
2002 Drosophila Rpn6, a non-ATPase subunit of the 19S regulatory particle lid complex of the 26S proteasome, physically interacts with Alien/CSN2 (the Drosophila ortholog of mammalian CSN2) via its PCI domain, as demonstrated by yeast two-hybrid analysis, and their expression patterns overlap during development. Yeast two-hybrid screen (Alien/CSN2 as bait); temporal/spatial expression pattern analysis by in situ hybridization and immunohistochemistry; genetic analysis of Rpn6 P-element insertion mutants Gene Medium 12426099
2003 Trip15/CSN2 interacts with Nif3l1, a conserved transcriptional repressor; this interaction promotes nuclear translocation of Nif3l1 during retinoic acid-induced neural differentiation of P19 cells, and together they synergistically repress transcription. Trip15/CSN2 overexpression drives neuronal (but not glial) differentiation via downregulation of Oct-3/4 and induction of neurogenic genes Brn-2 and Mash-1. Yeast two-hybrid screen (Trip15/CSN2 as bait vs. P19 cDNA library); GST pull-down assay; epitope-tagged co-immunoprecipitation; immunofluorescence localization; luciferase reporter assay; sense/antisense mRNA overexpression in P19 cells The Journal of biological chemistry High 12522100
2003 Trip15/CSN2 mRNA is induced at an early stage of neuronal differentiation in retinoic acid-treated P19 cells; enforced expression of Trip15/CSN2 is sufficient to convert P19 cells into neurons (but not glial cells) after aggregation without retinoic acid, accompanied by downregulation of Oct-3/4 and induction of neurogenic Brn-2 and Mash-1; antisense suppression of Trip15/CSN2 blocks commitment to neuronal lineage. In neonatal rat CNS, Trip15/CSN2 protein is localized to neuronal nuclei. Sense/antisense mRNA overexpression in P19 embryonal carcinoma cells; RT-PCR for marker genes (Oct-3/4, Brn-2, Mash-1); immunofluorescence localization in rat brain sections; in situ hybridization Brain research. Developmental brain research Medium 12524175
2017 In hepatocellular carcinoma cells, RMP activates NF-κB, which directly promotes expression of CSN2 (COP9 signalosome subunit 2); elevated CSN2 represses degradation of Snail, a transcriptional repressor of E-cadherin, thereby facilitating epithelial-mesenchymal transition and metastasis. Overexpression/knockdown of RMP and CSN2 in HCC cell lines; migration/invasion assays; Western blotting for E-cadherin, Snail, p65, CSN2; reporter assays for NF-κB; pulmonary metastasis mouse model; immunohistochemistry of human HCC tissues Oncotarget Medium 28423737
2016 DDA1 promotes colon cancer progression through activation of the NF-κB/CSN2/GSK-3β signaling pathway; DDA1-mediated NF-κB activation upregulates CSN2, which in turn modulates GSK-3β activity to promote cell cycle progression, invasion, and EMT. DDA1 overexpression/suppression in colon cancer cell lines; cell proliferation, apoptosis, invasion, and EMT assays; Western blotting for p65, CSN2, GSK-3β; in vivo tumor growth assay; immunohistochemistry of patient tissues Oncotarget Medium 26942699

Source papers

Stage 0 corpus · 56 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2003 Disruption of the COP9 signalosome Csn2 subunit in mice causes deficient cell proliferation, accumulation of p53 and cyclin E, and early embryonic death. Molecular and cellular biology 117 12972599
2006 The Aspergillus fumigatus metacaspases CasA and CasB facilitate growth under conditions of endoplasmic reticulum stress. Molecular microbiology 72 17176258
2010 Effects of beta-kappa-casein (CSN2-CSN3) haplotypes and beta-lactoglobulin (BLG) genotypes on milk production traits and detailed protein composition of individual milk of Simmental cows. Journal of dairy science 55 20655450
2011 Crystal structure of clustered regularly interspaced short palindromic repeats (CRISPR)-associated Csn2 protein revealed Ca2+-dependent double-stranded DNA binding activity. The Journal of biological chemistry 44 21697083
2010 Effects of beta-kappa-casein (CSN2-CSN3) haplotypes, beta-lactoglobulin (BLG) genotypes, and detailed protein composition on coagulation properties of individual milk of Simmental cows. Journal of dairy science 44 20655451
2013 Double-strand DNA end-binding and sliding of the toroidal CRISPR-associated protein Csn2. Nucleic acids research 41 23625968
2000 Interaction between interferon consensus sequence-binding protein and COP9/signalosome subunit CSN2 (Trip15). A possible link between interferon regulatory factor signaling and the COP9/signalosome. The Journal of biological chemistry 34 10991940
2022 The β-casein (CSN2) A2 allelic variant alters milk protein profile and slightly worsens coagulation properties in Holstein cows. Journal of dairy science 30 35248385
2014 The β-casein in camels: molecular characterization of the CSN2 gene, promoter analysis and genetic variability. Gene 30 24973699
2002 The proteasome regulatory particle subunit Rpn6 is required for Drosophila development and interacts physically with signalosome subunit Alien/CSN2. Gene 30 12426099
2003 The role of transcriptional corepressor Nif3l1 in early stage of neural differentiation via cooperation with Trip15/CSN2. The Journal of biological chemistry 27 12522100
2012 Identification, structural, and biochemical characterization of a group of large Csn2 proteins involved in CRISPR-mediated bacterial immunity. Proteins 25 22753072
2005 Short communication: predominance of beta-casein (CSN2) C allele in goat breeds reared in Italy. Journal of dairy science 25 15829682
2008 Characterization of a novel fungal chitosanase Csn2 from Gongronella sp. JG. Carbohydrate research 24 18722595
2012 Crystal structure of Streptococcus pyogenes Csn2 reveals calcium-dependent conformational changes in its tertiary and quaternary structure. PloS one 23 22479393
1992 Detection of multiple beta-casein (CASB) alleles by amplification created restriction sites (ACRS). Animal genetics 23 1503272
2012 The crystal structure of the CRISPR-associated protein Csn2 from Streptococcus agalactiae. Journal of structural biology 22 22531577
2021 CASB: a concanavalin A-based sample barcoding strategy for single-cell sequencing. Molecular systems biology 21 33821571
2003 Implication of Trip15/CSN2 in early stage of neuronal differentiation of P19 embryonal carcinoma cells. Brain research. Developmental brain research 21 12524175
2015 Molecular Characterization of the Llamas (Lama glama) Casein Cluster Genes Transcripts (CSN1S1, CSN2, CSN1S2, CSN3) and Regulatory Regions. PloS one 20 25923814
2007 An SNP in the goat CSN2 promoter region is associated with the absence of beta-casein in milk. Animal genetics 20 17931404
2015 Crystal Structure of Streptococcus pyogenes Cas1 and Its Interaction with Csn2 in the Type II CRISPR-Cas System. Structure (London, England : 1993) 19 26671707
2017 RMP promotes epithelial-mesenchymal transition through NF-κB/CSN2/Snail pathway in hepatocellular carcinoma. Oncotarget 17 28423737
1991 Sheep gene mapping: additional DNA markers included (CASB, CASK, LALBA, IGF-1 and AMH). Animal genetics 17 1892247
2012 Nucleic acid binding surface and dimer interface revealed by CRISPR-associated CasB protein structures. FEBS letters 16 23079036
2005 A Ssp I PCR-RFLP detecting a silent allele at the goat CSN2 locus. The Journal of dairy research 16 16223461
2020 Deletion of csn2 gene affects acid tolerance and exopolysaccharide synthesis in Streptococcus mutans. Molecular oral microbiology 14 32794605
2016 The SNP g.1311T>C associated with the absence of β-casein in goat milk influences CSN2 promoter activity. Animal genetics 11 27392512
2022 Role of CSN2, CSN3, and BLG genes and the polygenic background in the cattle milk protein profile. Journal of dairy science 10 35525618
2020 Supplementing conjugated and non-conjugated L-methionine and acetate alters expression patterns of CSN2, proteins and metabolites related to protein synthesis in bovine mammary cells. The Journal of dairy research 9 32114997
2016 DDA1 promotes stage IIB-IIC colon cancer progression by activating NFκB/CSN2/GSK-3β signaling. Oncotarget 9 26942699
2008 Short communication: the beta-casein (CSN2) silent allele C1 is highly spread in goat breeds. Journal of dairy science 9 18946150
2005 Detection and characterization by high-performance liquid chromatography and mass spectrometry of a goat beta-casein associated with a CSN2 null allele. Rapid communications in mass spectrometry : RCM 9 16178051
1992 Regional localization of human beta-casein gene (CSN2) to 4pter-q21. Genomics 9 1577486
2022 Novel top-down high-resolution mass spectrometry-based metabolomics and lipidomics reveal molecular change mechanism in A2 milk after CSN2 gene mutation. Food chemistry 7 35640340
2022 CRISPR-CasB technology in forensic DNA analysis: challenges and solutions. Applied microbiology and biotechnology 7 35704073
2008 Cloning and characterization of 5'-untranslated region of porcine beta casein gene (CSN2). Domestic animal endocrinology 7 18583090
2016 Genetic polymorphism of CSN2 gene in Banat White and Carpatina goats. Acta biochimica Polonica 5 27382646
2022 Genetic variants of CSN1S1, CSN2, CSN3, and BLG genes and their association with dairy production traits in Sahiwal cattle and Nili-Ravi buffaloes. Animal biotechnology 4 36165734
2021 Identification of Polymorphisms of the CSN2 Gene Encoding β-Casein in Greek Local Breeds of Cattle. Veterinary sciences 4 34822630
2015 Effect of Prolactin Receptor (PRLR) and Beta-Casein (CSN2) Gene Polymorphism on the Chemical Composition of Milk Sows. Folia biologica 4 26255464
2008 Technical note: detection of the C allele of beta-casein (CSN2) in Czech Dairy goat breeds using LightCycler analysis. Journal of dairy science 4 18832232
1996 Assignment of the gene for beta-casein (CSN2) to 4q13 --> q21 in humans and 3p13 --> p12 in chimpanzees. Cytogenetics and cell genetics 4 8565637
2023 A New AS-PCR Method to Detect CSN201 Allele, Genotyping at Ca-Sensitive Caseins Loci and Milk Traits Association Studies in Autochthonous Lazio Goats. Animals : an open access journal from MDPI 3 36670778
2022 Detection of A2A2 genotype of beta casein protein (CSN2) gene in local, exotic and cross bred cattle in Pakistan. Animal biotechnology 3 35235484
2011 Technical note: A novel method for routine genotyping of the G allele of β-casein (CSN2) and T allele of κ-casein (CSN3) in a sheep population using LightCycler. Journal of animal science 3 21841082
2025 Associations Between Polymorphisms of the CSN1S1, CSN1S2, CSN2 and CSN3 Genes and Milk Composition Traits in Holstein Cattle. Veterinary medicine and science 2 40184159
2023 Comparative analysis of A1 and A2 allele detection efficiency for bovine CSN2 gene by AS-PCR methods. Acta biochimica Polonica 2 36773313
2022 Single and combined effects of CSN1S1 and CSN2-casein genes on Awassi sheep milk quantity and quality. Veterinary world 2 35400971
2025 Differential A1/A2 β-casein (CSN2) gene-derived allelic and genotypic frequencies across Ecuadorian exotic dairy cattle breeds. Frontiers in veterinary science 1 40703919
2019 Characterization of a Novel Porcine CSN2 Polymorphism and Its Distribution in Five European Breeds. Animals : an open access journal from MDPI 1 31277514
2012 Activation of a casB gene encoding β-glucosidase of Pectobacterium carotovorum subsp. carotovorum LY34. Microbiological research 1 23176777
2026 An ARMS-integrated high-resolution melting assay for reliable discrimination of the A1/A2 polymorphism in the bovine CSN2 gene. Food chemistry. Molecular sciences 0 42088988
2025 Association study of the CSN2 gene with milk yield in the Sapera goat. Journal of advanced veterinary and animal research 0 41923857
2022 [Effect of csn2 gene deficiency on the starvation tolerance and the synthesis of extracellular polysaccharides in oligotrophic environment of Streptococcus mutans]. Zhonghua kou qiang yi xue za zhi = Zhonghua kouqiang yixue zazhi = Chinese journal of stomatology 0 35012254
2021 [Transcriptomic Analysis of csn2 Gene Mutant Strains of Streptococcus mutans CRISPR-Cas9 System]. Sichuan da xue xue bao. Yi xue ban = Journal of Sichuan University. Medical science edition 0 33474893

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