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Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. |
Proceedings of the National Academy of Sciences of the United States of America |
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Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry. |
Nature biotechnology |
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The BioPlex Network: A Systematic Exploration of the Human Interactome. |
Cell |
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Architecture of the human interactome defines protein communities and disease networks. |
Nature |
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VIRMA mediates preferential m6A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. |
Cell discovery |
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Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. |
Cell |
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Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. |
Briefings in bioinformatics |
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High-Density Proximity Mapping Reveals the Subcellular Organization of mRNA-Associated Granules and Bodies. |
Molecular cell |
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Multilevel proteomics reveals host perturbations by SARS-CoV-2 and SARS-CoV. |
Nature |
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The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). |
Genome research |
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A Dynamic Protein Interaction Landscape of the Human Centrosome-Cilium Interface. |
Cell |
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OpenCell: Endogenous tagging for the cartography of human cellular organization. |
Science (New York, N.Y.) |
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A proximity-dependent biotinylation map of a human cell. |
Nature |
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Crystal structure of a photolyase bound to a CPD-like DNA lesion after in situ repair. |
Science (New York, N.Y.) |
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Virus-Host Interactome and Proteomic Survey Reveal Potential Virulence Factors Influencing SARS-CoV-2 Pathogenesis. |
Med (New York, N.Y.) |
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Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing. |
Proceedings of the National Academy of Sciences of the United States of America |
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Proteomic analysis of human parotid gland exosomes by multidimensional protein identification technology (MudPIT). |
Journal of proteome research |
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Toward an understanding of the protein interaction network of the human liver. |
Molecular systems biology |
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An AP-MS- and BioID-compatible MAC-tag enables comprehensive mapping of protein interactions and subcellular localizations. |
Nature communications |
201 |
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CPD damage recognition by transcribing RNA polymerase II. |
Science (New York, N.Y.) |
201 |
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Powerful skin cancer protection by a CPD-photolyase transgene. |
Current biology : CB |
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Transcription of the Arabidopsis CPD gene, encoding a steroidogenic cytochrome P450, is negatively controlled by brassinosteroids. |
The Plant journal : for cell and molecular biology |
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A High-Density Human Mitochondrial Proximity Interaction Network. |
Cell metabolism |
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Systematic identification of mRNAs recruited to argonaute 2 by specific microRNAs and corresponding changes in transcript abundance. |
PloS one |
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Ubiquitin-mediated proteolysis of HuR by heat shock. |
The EMBO journal |
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A T-lymphoma transmembrane glycoprotein (gp180) is linked to the cytoskeletal protein, fodrin. |
The Journal of cell biology |
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Mapping the proximity interaction network of the Rho-family GTPases reveals signalling pathways and regulatory mechanisms. |
Nature cell biology |
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Alterations of red blood cell metabolome during cold liquid storage of erythrocyte concentrates in CPD-SAGM. |
Journal of proteomics |
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The Functional Proximal Proteome of Oncogenic Ras Includes mTORC2. |
Molecular cell |
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CYP90A1/CPD, a brassinosteroid biosynthetic cytochrome P450 of Arabidopsis, catalyzes C-3 oxidation. |
The Journal of biological chemistry |
123 |
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gp180, a host cell glycoprotein that binds duck hepatitis B virus particles, is encoded by a member of the carboxypeptidase gene family. |
The Journal of biological chemistry |
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The human cytoplasmic dynein interactome reveals novel activators of motility. |
eLife |
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Paralog knockout profiling identifies DUSP4 and DUSP6 as a digenic dependence in MAPK pathway-driven cancers. |
Nature genetics |
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Differential biologic effects of CPD and 6-4PP UV-induced DNA damage on the induction of apoptosis and cell-cycle arrest. |
BMC cancer |
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Systematically defining selective autophagy receptor-specific cargo using autophagosome content profiling. |
Molecular cell |
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ESCRT-dependent STING degradation inhibits steady-state and cGAMP-induced signalling. |
Nature communications |
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Mammalian APE1 controls miRNA processing and its interactome is linked to cancer RNA metabolism. |
Nature communications |
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RSPO-LGR4 functions via IQGAP1 to potentiate Wnt signaling. |
Proceedings of the National Academy of Sciences of the United States of America |
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The in vivo survival of red blood cells stored in modified CPD with adenine: report of a multi-institutional cooperative effort. |
Transfusion |
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Intracellular trafficking of metallocarboxypeptidase D in AtT-20 cells: localization to the trans-Golgi network and recycling from the cell surface. |
Journal of cell science |
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RIPK1 inhibitor Cpd-71 attenuates renal dysfunction in cisplatin-treated mice via attenuating necroptosis, inflammation and oxidative stress. |
Clinical science (London, England : 1979) |
75 |
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Carboxypeptidase D (gp180), a Golgi-resident protein, functions in the attachment and entry of avian hepatitis B viruses. |
Journal of virology |
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Defective expression of gp180, a novel CD8 ligand on intestinal epithelial cells, in inflammatory bowel disease. |
The Journal of clinical investigation |
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Tyrosine phosphatase activity of lymphoma CD45 (GP180) is regulated by a direct interaction with the cytoskeleton. |
The Journal of biological chemistry |
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Sepsis affects most routine and cell population data (CPD) obtained using the Sysmex XN-2000 blood cell analyzer: neutrophil-related CPD NE-SFL and NE-WY provide useful information for detecting sepsis. |
International journal of laboratory hematology |
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Continuous venovenous haemodialysis (CVVHD) and continuous peritoneal dialysis (CPD) in the acute management of 21 children with inborn errors of metabolism. |
Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association |
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Diurnal regulation of the brassinosteroid-biosynthetic CPD gene in Arabidopsis. |
Plant physiology |
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Avian hepatitis B virus infection is initiated by the interaction of a distinct pre-S subdomain with the cellular receptor gp180. |
Journal of virology |
56 |
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Increase in CPD photolyase activity functions effectively to prevent growth inhibition caused by UVB radiation. |
The Plant journal : for cell and molecular biology |
54 |
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Structure-function analysis of the kinase-CPD domain of yeast tRNA ligase (Trl1) and requirements for complementation of tRNA splicing by a plant Trl1 homolog. |
Nucleic acids research |
52 |
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Reviewing the value of leukocytes cell population data (CPD) in the management of sepsis. |
Annals of translational medicine |
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Half-strength citrate CPD combined with a new additive solution for improved storage of red blood cells suitable for clinical use. |
Vox sanguinis |
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High-resolution characterization of CPD hotspot formation in human fibroblasts. |
Nucleic acids research |
49 |
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Clinical significance of cell population data (CPD) on Sysmex XN-9000 in septic patients with our without liver impairment. |
Annals of translational medicine |
48 |
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Characterization of a 180-kDa intestinal epithelial cell membrane glycoprotein, gp180. A candidate molecule mediating t cell-epithelial cell interactions. |
The Journal of biological chemistry |
48 |
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gp180, a protein that binds duck hepatitis B virus particles, has metallocarboxypeptidase D-like enzymatic activity. |
The Journal of biological chemistry |
47 |
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Cyclobutane pyrimidine dimer (CPD) photolyase repairs ultraviolet-B-induced CPDs in rice chloroplast and mitochondrial DNA. |
The Plant journal : for cell and molecular biology |
46 |
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The storage of hard-packed red blood cells in citrate-phosphate-dextrose (CPD) and CPD-adenine (CPDA-1). |
Blood |
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Sequences within the cytoplasmic domain of gp180/carboxypeptidase D mediate localization to the trans-Golgi network. |
Molecular biology of the cell |
44 |
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Structure and dynamics of poly(T) single-strand DNA: implications toward CPD formation. |
The journal of physical chemistry. B |
43 |
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Buffy-coat-derived platelet concentrates prepared from half-strength citrate CPD and CPD whole-blood units. Comparison between three additive solutions: in vitro studies. |
Vox sanguinis |
43 |
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Phosphorylation of the postsynaptic density glycoprotein gp180 by endogenous tyrosine kinase. |
Brain research |
43 |
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Fowlpox virus encodes a novel DNA repair enzyme, CPD-photolyase, that restores infectivity of UV light-damaged virus. |
Journal of virology |
41 |
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Evaluation of a new citrate-acetate-NaCl platelet additive solution for the storage of white cell-reduced platelet concentrates obtained from half-strength CPD pooled buffy coats. |
Transfusion |
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Improvement in detecting sepsis using leukocyte cell population data (CPD). |
Clinical chemistry and laboratory medicine |
37 |
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Investigation of the cyclobutane pyrimidine dimer (CPD) photolyase DNA recognition mechanism by NMR analyses. |
The Journal of biological chemistry |
37 |
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Diurnal change of cucumber CPD photolyase gene (CsPHR) expression and its physiological role in growth under UV-B irradiation. |
Plant & cell physiology |
36 |
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Characterization of biochemical changes occurring during storage of red cells. Comparative studies with CPD and CPDA-1 anticoagulant-preservative solutions. |
Transfusion |
35 |
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The nonclassical class I molecule CD1d associates with the novel CD8 ligand gp180 on intestinal epithelial cells. |
The Journal of biological chemistry |
33 |
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Increased DNA repair in Arabidopsis plants overexpressing CPD photolyase. |
Planta |
30 |
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Erythrocytes stored in CPD SAG-mannitol: evaluation of their deformability. |
Clinical hemorheology and microcirculation |
29 |
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Coagulation parameters of CPD fresh-frozen plasma and CPD cryoprecipitate-poor plasma after storage at 4 degrees C for 28 days. |
Transfusion |
29 |
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Transfection of pseudouridine-modified mRNA encoding CPD-photolyase leads to repair of DNA damage in human keratinocytes: a new approach with future therapeutic potential. |
Journal of photochemistry and photobiology. B, Biology |
28 |
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Phosphorylation of the postsynaptic density glycoprotein gp180 by Ca2+/calmodulin-dependent protein kinase. |
Journal of neurochemistry |
28 |
2993521 |
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Rutaecarpine derivative Cpd-6c alleviates acute kidney injury by targeting PDE4B, a key enzyme mediating inflammation in cisplatin nephropathy. |
Biochemical pharmacology |
27 |
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Continuing professional development (CPD) in radiography: A collaborative European meta-ethnography literature review. |
Radiography (London, England : 1995) |
27 |
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Complement components detected on normal red blood cells taken into EDTA and CPD. |
Vox sanguinis |
27 |
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Fluorinated Cpd 5, a pure arylating K-vitamin derivative, inhibits human hepatoma cell growth by inhibiting Cdc25 and activating MAPK. |
Biochemical pharmacology |
26 |
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DNA polymerase beta can incorporate ribonucleotides during DNA synthesis of undamaged and CPD-damaged DNA. |
Journal of molecular biology |
26 |
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| 2014 |
First characterisation of a CPD-class I photolyase from a UV-resistant extremophile isolated from High-Altitude Andean Lakes. |
Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology |
25 |
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The Potorous CPD photolyase rescues a cryptochrome-deficient mammalian circadian clock. |
PloS one |
25 |
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The DASH-type Cryptochrome from the Fungus Mucor circinelloides Is a Canonical CPD-Photolyase. |
Current biology : CB |
24 |
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Phosphorylation of proteins of the postsynaptic density: effect of development on protein tyrosine kinase and phosphorylation of the postsynaptic density glycoprotein, PSD-GP180. |
Journal of neuroscience research |
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Storage of red cell concentrates in CPD-A2 for 42 and 49 days. |
The Journal of laboratory and clinical medicine |
22 |
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Circulating programmed death ligand-1 (cPD-L1) in non-small-cell lung cancer (NSCLC). |
Oncotarget |
20 |
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Antitumor and anticarcinogenic actions of Cpd 5: a new class of protein phosphatase inhibitor. |
Carcinogenesis |
20 |
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Identification of a membrane-bound carboxypeptidase as the mammalian homolog of duck gp180, a hepatitis B virus-binding protein. |
Life sciences |
20 |
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In vitro effect on stored red blood cells and platelets after a 15-hour delayed refrigeration of whole blood prior to component preparation in CPD-AD. |
Vox sanguinis |
20 |
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The in vitro evaluation of modifications in CPD-adenine anticoagulated-preserved blood at various hematocrits. |
Transfusion |
20 |
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Cpd-A1 alleviates acute kidney injury by inhibiting ferroptosis. |
Acta pharmacologica Sinica |
19 |
38641746 |
| 2020 |
A two-photon fluorescence, carbonized polymer dot (CPD)-based, wide range pH nanosensor: a view from the surface state. |
Nanoscale |
19 |
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Genome-Wide Mapping of UV-Induced DNA Damage with CPD-Seq. |
Methods in molecular biology (Clifton, N.J.) |
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Fluorescently-labelled CPD and 6-4PP photolyases: new tools for live-cell DNA damage quantification and laser-assisted repair. |
Nucleic acids research |
19 |
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| 2019 |
Chrysanthemum Morifolium Extract And Ascorbic Acid-2-Glucoside (AA2G) Blend Inhibits UVA-Induced Delayed Cyclobutane Pyrimidine Dimer (CPD) Production In Melanocytes. |
Clinical, cosmetic and investigational dermatology |
19 |
32009811 |
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A non-class I MHC intestinal epithelial surface glycoprotein, gp180, binds to CD8. |
Clinical immunology (Orlando, Fla.) |
19 |
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Cloning, functional expression, and chromosomal localization of the human and mouse gp180-carboxypeptidase D-like enzyme. |
Gene |
19 |
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New ligation independent cloning vectors for expression of recombinant proteins with a self-cleaving CPD/6xHis-tag. |
BMC biotechnology |
18 |
28056928 |
| 2022 |
Photorepair of Either CPD or 6-4PP DNA Lesions in Basal Keratinocytes Attenuates Ultraviolet-Induced Skin Effects in Nucleotide Excision Repair Deficient Mice. |
Frontiers in immunology |
17 |
35422806 |
| 2010 |
Investigation of excess-electron transfer in DNA double-duplex systems allows estimation of absolute excess-electron transfer and CPD cleavage rates. |
Chemistry (Weinheim an der Bergstrasse, Germany) |
17 |
21207617 |
| 2022 |
Cpd-42 protects against calcium oxalate nephrocalcinosis-induced renal injury and inflammation by targeting RIPK3-mediated necroptosis. |
Frontiers in pharmacology |
16 |
36408256 |
| 2016 |
Functional analyses of Populus euphratica brassinosteroid biosynthesis enzyme genes DWF4 (PeDWF4) and CPD (PeCPD) in the regulation of growth and development of Arabidopsis thaliana. |
Journal of biosciences |
16 |
27966492 |
| 2021 |
Intradermal co-inoculation of codon pair deoptimization (CPD)-attenuated chimeric porcine reproductive and respiratory syndrome virus (PRRSV) with Toll like receptor (TLR) agonists enhanced the protective effects in pigs against heterologous challenge. |
Veterinary microbiology |
15 |
33845333 |
| 2021 |
Transgenic rice Oryza glaberrima with higher CPD photolyase activity alleviates UVB-caused growth inhibition. |
GM crops & food |
15 |
34935587 |
| 2016 |
Functional Conversion of CPD and (6-4) Photolyases by Mutation. |
Biochemistry |
15 |
27431478 |
| 2000 |
Refined mapping of the human serotonin transporter (SLC6A4) gene within 17q11 adjacent to the CPD and NF1 genes. |
European journal of human genetics : EJHG |
15 |
10713891 |
| 2020 |
A natural occurring bifunctional CPD/(6-4)-photolyase from the Antarctic bacterium Sphingomonas sp. UV9. |
Applied microbiology and biotechnology |
14 |
32572574 |
| 2014 |
Characterization and differential expression of CPD and 6-4 DNA photolyases in Xiphophorus species and interspecies hybrids. |
Comparative biochemistry and physiology. Toxicology & pharmacology : CBP |
14 |
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Blood preservation XVI packed red cell storage in CPD-adenine. |
Transfusion |
14 |
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CPD-photolyase adenovirus-mediated gene transfer in normal and DNA-repair-deficient human cells. |
Journal of cell science |
13 |
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| 2001 |
CPD-Education and self-assessment: Epilepsy and pregnancy. |
Seizure |
13 |
11437622 |
| 1993 |
Half-strength citrate CPD and new additive solutions for improved blood preservation. I. Studies of six experimental solutions. |
Transfusion medicine (Oxford, England) |
13 |
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Blood storage XXII. Improvement in red blood cell 2,3-DPG levels at six weeks by 20 mM PO4 in CPD-adenine-inosine. |
Transfusion |
13 |
982537 |
| 2020 |
Targeting c-Met in triple negative breast cancer: preclinical studies using the c-Met inhibitor, Cpd A. |
Investigational new drugs |
12 |
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| 2012 |
Augmentation of CPD photolyase activity in japonica and indica rice increases their UVB resistance but still leaves the difference in their sensitivities. |
Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology |
12 |
22362193 |
| 2012 |
Analysis of CPD ultraviolet lesion bypass in chicken DT40 cells: polymerase η and PCNA ubiquitylation play identical roles. |
PloS one |
12 |
23272247 |
| 2011 |
Evidence from thermodynamics that DNA photolyase recognizes a solvent-exposed CPD lesion. |
The journal of physical chemistry. B |
12 |
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CPD photolyase gene from Spinacia oleracea: repair of UV-damaged DNA and expression in plant organs. |
Journal of radiation research |
12 |
15988133 |
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Tyrosine phosphorylation in a model of ischemia using the rat hippocampal slice: specific, long-term decrease in the tyrosine phosphorylation of the postsynaptic glycoprotein PSD-GP180. |
Journal of neurochemistry |
11 |
7561882 |
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Complement in CPD-stored blood. |
Vox sanguinis |
11 |
7090334 |
| 1977 |
Blood storage XXIV: red blood cell 2,3-DPG and ATP maintenance for six weeks in CPD-adenine with higher phosphate, pyruvate, and dihydroxyacetone. |
Transfusion |
11 |
867465 |
| 2022 |
Recombinant Photolyase-Thymine Alleviated UVB-Induced Photodamage in Mice by Repairing CPD Photoproducts and Ameliorating Oxidative Stress. |
Antioxidants (Basel, Switzerland) |
10 |
36552521 |
| 2019 |
The complete genome of Rachiplusia nu nucleopolyhedrovirus (RanuNPV) and the identification of a baculoviral CPD-photolyase homolog. |
Virology |
10 |
31200103 |
| 2014 |
Investigation of CPD and HMDS sample preparation techniques for cervical cells in developing computer-aided screening system based on FE-SEM/EDX. |
TheScientificWorldJournal |
10 |
25610902 |
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[Chromosome CPD(PI/DAPI)- and CMA/DAPI-banding patterns in Allium cepa L]. |
Genetika |
10 |
12018166 |
| 1979 |
Plasma adenine and cellular ATP in red cell concentrates collected and stored in modified CPD at 4 C. |
Transfusion |
10 |
432914 |
| 2023 |
Principles for Continuing Professional Development (CPD) Programs: A Statement by the ACPE CPD Advisory Committee. |
American journal of pharmaceutical education |
9 |
37524261 |
| 2022 |
Preparation of CPD Photolyase Nanoliposomes Derived from Antarctic Microalgae and Their Effect on UVB-Induced Skin Damage in Mice. |
International journal of molecular sciences |
9 |
36499473 |
| 2021 |
A CPD photolyase gene PnPHR1 from Antarctic moss Pohlia nutans is involved in the resistance to UV-B radiation and salinity stress. |
Plant physiology and biochemistry : PPB |
9 |
34385002 |
| 2021 |
Ability of the Putative Decomposition Products of 2,3-dioxetanes of Indoles to Photosensitize Cyclobutane Pyrimidine Dimer (CPD) Formation and its Implications for the "Dark" (Chemisensitized) Pathway to CPDs in Melanocytes†. |
Photochemistry and photobiology |
9 |
34558720 |
| 2005 |
The DNA repair enzyme, CPD-photolyase restores the infectivity of UV-damaged fowlpox virus isolated from infected scabs of chickens. |
Veterinary microbiology |
9 |
15936904 |