Affinage

CNNM2

Metal transporter CNNM2 · UniProt Q9H8M5

Length
875 aa
Mass
96.6 kDa
Annotated
2026-06-09
27 papers in source corpus 14 papers cited in narrative 14 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 8/8 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

CNNM2 is a basolateral membrane protein of the renal distal convoluted tubule that governs cellular and systemic Mg2+ homeostasis (PMID:21397062, PMID:33859252). In heterologous systems it mediates Mg2+-sensitive transmembrane cation currents and saturable Mg2+ flux (PMID:15899945, PMID:21397062), and in mammalian cells it promotes cellular Mg2+ uptake at least in part through regulation of the Mg2+-permeable channel TRPM7, while also supporting Mg2+ efflux (PMID:24699222, PMID:35846113). The protein adopts an extracellular N-terminus/intracellular C-terminus topology, is N-glycosylated at Asn-112 to stabilize its plasma-membrane expression, and forms homo- and heterodimers between its isoforms (PMID:22399287). Its intracellular CBS-domain (Bateman) module binds AMP/ADP/ATP — with Mg2+ facilitating ATP binding — and switches from a twisted to a flat disc-like conformation upon nucleotide binding, a transition that transmits regulatory signals toward the transmembrane region; the pathogenic T568I mutation locks this module in the nucleotide-bound flat state and disrupts Mg2+ transport regulation (PMID:25184538). The same Bateman module mediates a heterotetrameric interaction with the oncogenic phosphatase PRL-1, anchored by CBS2 residue Asp-558 (PMID:27899452). CNNM2 is essential for embryonic development and contributes to renal and intestinal Mg2+ handling, as homozygous knockout is largely perinatally lethal and produces hypomagnesemia with increased fecal Mg2+ and Ca2+ excretion (PMID:33859252). Independent of its transport role, CNNM2 acts directly in neurons, where reduced expression alters dendritic spine morphogenesis and impairs cognition and sensorimotor gating (PMID:37715107). Loss-of-function patient mutations recurrently reduce plasma-membrane expression, cause cytoplasmic mislocalization, and abolish the protein's ability to normalize intracellular Mg2+ (PMID:24699222, PMID:33600043, PMID:40612795).

Mechanistic history

Synthesis pass · year-by-year structured walk · 13 steps
  1. 2005 Medium

    Established that CNNM2 itself can mediate Mg2+ movement, defining it as a candidate Mg2+ transport entity with broad divalent-cation selectivity.

    Evidence Two-electrode voltage-clamp of mouse ACDP2/CNNM2 in Xenopus oocytes with substrate characterization

    PMID:15899945

    Open questions at the time
    • Single heterologous system, single lab
    • Did not establish whether currents reflect direct transport or channel regulation
    • No in vivo or renal context
  2. 2010 Medium

    Showed that only CNNM2 isoform 1 is a functional Mg2+-transporting entity, distinguishing functional from non-functional splice variants.

    Evidence Bacterial complementation in Salmonella MM281 and Mg2+ influx measurement

    PMID:20519162

    Open questions at the time
    • Bacterial surrogate may not reflect mammalian function
    • Did not resolve direct transport vs. regulatory role
  3. 2011 High

    Localized CNNM2 to the basolateral membrane of distal renal tubule and linked patient mutations to diminished Mg2+-sensitive currents, anchoring it as a physiological renal Mg2+ handler.

    Evidence Immunolocalization plus electrophysiology of wild-type vs. mutant CNNM2 in kidney epithelial cells across two families

    PMID:21397062

    Open questions at the time
    • Mechanism by which Mg2+ sensitivity is conferred not defined
    • Did not establish whether CNNM2 is a transporter or regulator
  4. 2012 High

    Defined the membrane topology, N-glycosylation at Asn-112 required for plasma-membrane stability, and isoform heterodimerization, providing the structural framework for the protein's surface expression.

    Evidence Epitope-insertion topology mapping, glycosylation-site mutagenesis, and co-immunoprecipitation

    PMID:22399287

    Open questions at the time
    • Functional consequence of heterodimerization on transport not established
    • Did not address the intracellular regulatory domain function
  5. 2014 High

    Placed CNNM2 in a Mg2+ uptake pathway via TRPM7 and demonstrated organismal requirement, showing patient mutations are loss-of-function for cellular Mg2+ uptake and neurodevelopment.

    Evidence Stable Mg2+ isotope uptake in HEK293 cells and zebrafish morpholino knockdown with WT/mutant rescue

    PMID:24699222

    Open questions at the time
    • Whether CNNM2 directly transports Mg2+ or only regulates TRPM7 unresolved
    • Molecular basis of TRPM7 regulation not defined
  6. 2014 High

    Revealed nucleotide-gated conformational regulation of the CBS/Bateman module and explained a pathogenic mutation as a conformational lock, establishing the intracellular regulatory mechanism.

    Evidence X-ray crystallography of apo and nucleotide-bound Bateman module and structural comparison with the T568I mutant

    PMID:25184538

    Open questions at the time
    • How the conformational change is transmitted to the transmembrane region remains structurally unmapped
    • Full-length structure unavailable
  7. 2016 High

    Defined the structural basis of the CNNM2–PRL-1 interaction, linking CNNM2 to oncogenic phosphatase signaling through a heterotetrameric interface.

    Evidence Crystal structure of PRL-1/CNNM2 Bateman module complex with Asp-558 mutagenesis

    PMID:27899452

    Open questions at the time
    • Functional consequence of PRL-1 binding on CNNM2 transport not resolved
    • In vivo relevance of the interaction not tested here
  8. 2016 Medium

    Challenged the direct-transporter model by failing to detect Mg2+ transport by either human isoform and observing broad subcellular distribution and higher-order complexes.

    Evidence Electrogenic and electroneutral Mg2+ transport assays, fractionation, and complex analysis in HEK293 cells

    PMID:27068403

    Open questions at the time
    • Negative result from a single lab, contradicts earlier transport findings
    • Interactors not identified
    • Reason for discrepancy with prior assays unresolved
  9. 2021 High

    Established the organismal physiology of CNNM2 loss, showing perinatal lethality and disturbed renal and intestinal Mg2+/Ca2+ handling.

    Evidence CRISPR/Cas9 Cnnm2 knockout mice with serum/fecal electrolyte and microCT analysis

    PMID:33859252

    Open questions at the time
    • Cause of perinatal lethality not defined
    • Tissue-specific contributions not dissected
  10. 2021 Medium

    Demonstrated a transport-independent neuronal role for CNNM2 in dendritic spine morphogenesis and cognition.

    Evidence In vivo mPFC knockdown with behavioral assays, primary neuron knockdown morphology, and proteomics

    PMID:37715107

    Open questions at the time
    • Molecular mechanism in neurons not defined
    • Relationship to Mg2+ transport unclear
    • Single lab
  11. 2021 Medium

    Consolidated the loss-of-function mechanism for patient variants as reduced plasma-membrane expression and failure to raise cellular Mg2+ uptake.

    Evidence 25Mg2+ uptake assays and plasma-membrane immunofluorescence in HEK293 cells across multiple variants

    PMID:33600043

    Open questions at the time
    • Does not distinguish trafficking defect from intrinsic transport defect
    • Single lab
  12. 2022 Medium

    Provided direct evidence for a Mg2+ efflux role using a relevant DCT cell type, linking a CBS-domain mutation to impaired ATP-Mg2+ binding and intracellular Mg2+ accumulation.

    Evidence MgGreen efflux assay in mDCT cells with WT vs. R480L CNNM2 and molecular dynamics simulation

    PMID:35846113

    Open questions at the time
    • Efflux mechanism supported partly by computation
    • Direct vs. regulatory efflux not distinguished
    • Single lab
  13. 2025 Medium

    Showed that some pathogenic variants act by mislocalization and cytoplasmic clumping despite elevated expression, causing intracellular Mg2+ accumulation.

    Evidence qPCR, Western blot, immunofluorescence, and flow cytometry in cells expressing E298del and P360R variants

    PMID:40612795

    Open questions at the time
    • No direct transport reconstitution
    • Mechanism linking mislocalization to Mg2+ accumulation not defined

Open questions

Synthesis pass · forward-looking unresolved questions
  • Whether CNNM2 is itself a Mg2+ transporter or primarily a regulator of channels such as TRPM7 — and how nucleotide-driven CBS-domain conformational change is mechanically coupled to transmembrane Mg2+ flux — remains unresolved.
  • No full-length structure
  • Conflicting transport assay outcomes across labs
  • Direct vs. regulatory transport mechanism undefined

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0005215 transporter activity 4 GO:0098772 molecular function regulator activity 2 GO:0140657 ATP-dependent activity 1
Localization
GO:0005886 plasma membrane 3 GO:0005829 cytosol 2
Pathway
R-HSA-382551 Transport of small molecules 3
Partners

Evidence

Reading pass · 14 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2005 CNNM2 (ACDP2) expressed in Xenopus laevis oocytes mediates saturable, rheogenic, voltage-dependent Mg2+ uptake (Km ~0.56 mM) that is not coupled to Na+ or Cl-, and also transports Co2+, Mn2+, Sr2+, Ba2+, Cu2+, and Fe2+; Zn2+ inhibits transport whereas Ca2+, Cd2+, and Ni2+ did not induce currents. Two-electrode voltage-clamp in Xenopus oocytes expressing mouse ACDP2/CNNM2 Physiological genomics Medium 15899945
2011 CNNM2 localizes to the basolateral membrane of distal tubular segments in the kidney and mediates Mg2+-sensitive Na+ currents that are significantly diminished by patient mutations and blocked by elevated extracellular Mg2+. Immunofluorescence/immunohistochemistry for basolateral localization; electrophysiological analysis of wild-type vs. mutant CNNM2 in epithelial kidney cell lines American journal of human genetics High 21397062
2010 CNNM2 isoform 1 (ACDP2 splice variant 1), but not isoform 2, can complement the Mg2+-deficient growth phenotype of Salmonella strain MM281 (lacking mgtA, mgtB, corA) and supports measurable Mg2+ influx, establishing isoform 1 as a functional Mg2+-transporting entity. Bacterial complementation assay in Salmonella MM281; Mg2+ influx measurement Magnesium research Medium 20519162
2012 CNNM2 has an extracellular N-terminus and intracellular C-terminus; a large N-terminal signal peptide (~64 aa) is cleaved by the signal peptidase complex in the ER; CNNM2 is N-glycosylated at Asn-112 which stabilizes it at the plasma membrane; CNNM2a forms heterodimers with the smaller isoform CNNM2b. Membrane topology analysis using intramolecular epitopes and immunocytochemistry; mutagenesis of glycosylation site; co-immunoprecipitation for heterodimer formation The Journal of biological chemistry High 22399287
2012 The CBS-domain pair (Bateman module) of CNNM2 was purified and crystallized, yielding crystals diffracting to 2.0 Å, establishing the structural tractability of this intracellular regulatory domain. Protein purification and X-ray crystallography (preliminary crystallographic analysis) Acta crystallographica. Section F Low 23027747
2014 CNNM2 increases cellular Mg2+ uptake in HEK293 cells through regulation of the Mg2+-permeable cation channel TRPM7; patient-derived mutant CNNM2 proteins fail to increase Mg2+ uptake. Knockdown of cnnm2 in zebrafish reduces body Mg content and causes neurodevelopmental defects rescued by wild-type but not mutant mammalian Cnnm2 cRNA. Stable Mg2+ isotope uptake assay in HEK293 cells; zebrafish morpholino knockdown with rescue experiments PLoS genetics High 24699222
2014 The Bateman module (CBS-domain pair) of CNNM2 binds nucleotides (AMP, ADP, ATP) at one of its two cavities; Mg2+ facilitates ATP binding by reducing charge repulsion. Nucleotide binding triggers a conformational change from a twisted to a flat disc-like CBS module affecting elements connecting the Bateman module to the transmembrane region. The pathogenic mutation T568I mimics the flat nucleotide-bound conformation, locking the CBS module and thereby disrupting normal Mg2+ transport regulation. X-ray crystallography of CNNM2 Bateman module with nucleotide ligands; structural comparison of wild-type vs. T568I mutant The Biochemical journal High 25184538
2016 The crystal structure of PRL-1 in complex with the Bateman module of CNNM2 (CNNM2BAT) reveals a heterotetrameric assembly: a disc-like homodimer of CNNM2BAT binds two PRL-1 molecules via the phosphatase catalytic domain. Asp-558 in the CBS2 extended loop of CNNM2 is key for the PRL-1 interaction. X-ray crystallography of PRL-1/CNNM2BAT complex; mutagenesis (Asp-558) The Journal of biological chemistry High 27899452
2016 Human CNNM2 isoforms 1 and 2 do not transport Mg2+ in an electrogenic or electroneutral mode in HEK293 cells overexpressing either isoform, and localize to multiple subcellular compartments rather than exclusively to the plasma membrane; both isoforms form higher-order protein complexes with divergent sets of potential interactors. Mg2+ transport assays (electrogenic and electroneutral) in transgenic HEK293 cells; subcellular fractionation/localization; complex formation analysis Pflugers Archiv : European journal of physiology Medium 27068403
2021 Cnnm2 knockout mice show mild hypomagnesemia, elevated serum Ca2+, and increased fecal Mg2+ and Ca2+ excretion; homozygous Cnnm2-/- pups are largely lethal at birth, indicating CNNM2 is essential for embryonic development and suggesting a role in intestinal as well as renal Mg2+ handling. CRISPR/Cas9 Cnnm2 knockout mouse model; serum and fecal electrolyte measurement; microcomputed tomography Scientific reports High 33859252
2021 Reduced Cnnm2 expression in mouse medial prefrontal cortex impairs cognition and sensorimotor gating; decreased Cnnm2 in primary cortical neurons alters dendritic spine morphogenesis, establishing a direct neuronal role for CNNM2. In vivo Cnnm2 knockdown in mPFC of mice (behavioral assays); Cnnm2 knockdown in primary cortical neurons (morphological analysis); proteomics of Cnnm2-reduced neurons Neuropsychopharmacology Medium 37715107
2021 Pathogenic CNNM2 mutations result in decreased plasma membrane expression of CNNM2 protein, and loss-of-function variants assessed by 25Mg2+ uptake assay fail to increase cellular Mg2+ uptake in HEK293 cells. 25Mg2+ stable isotope uptake assay; immunofluorescence for plasma membrane expression in HEK293 cells Human mutation Medium 33600043
2022 The CNNM2 R480L mutation in the CBS domain impairs ATP-Mg2+ binding (shown by simulation modeling) and causes intracellular Mg2+ accumulation in murine DCT cells, demonstrating diminished Mg2+ efflux activity. Mg2+ efflux assay (MgGreen fluorescence) in mDCT cells expressing wild-type vs. R480L CNNM2; molecular dynamics simulation of ATP-Mg2+ binding Frontiers in genetics Medium 35846113
2025 CNNM2 variants p.E298del and p.P360R increase CNNM2 transcription and protein levels but impair proper localization to the cell membrane, causing cytoplasmic accumulation and clumping of variant proteins; both variants result in elevated intracellular Mg2+, disrupting Mg2+ homeostasis and indicating impaired Mg2+ efflux. qPCR, Western blotting, immunofluorescence, and flow cytometry in cells expressing variant CNNM2 Frontiers in genetics Medium 40612795

Source papers

Stage 0 corpus · 27 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2011 CNNM2, encoding a basolateral protein required for renal Mg2+ handling, is mutated in dominant hypomagnesemia. American journal of human genetics 163 21397062
2005 Functional characterization of ACDP2 (ancient conserved domain protein), a divalent metal transporter. Physiological genomics 104 15899945
2014 CNNM2 mutations cause impaired brain development and seizures in patients with hypomagnesemia. PLoS genetics 103 24699222
2012 Membrane topology and intracellular processing of cyclin M2 (CNNM2). The Journal of biological chemistry 86 22399287
2016 Structural Basis of the Oncogenic Interaction of Phosphatase PRL-1 with the Magnesium Transporter CNNM2. The Journal of biological chemistry 55 27899452
2016 Two-stage replication of previous genome-wide association studies of AS3MT-CNNM2-NT5C2 gene cluster region in a large schizophrenia case-control sample from Han Chinese population. Schizophrenia research 45 27401531
2014 Nucleotide binding triggers a conformational change of the CBS module of the magnesium transporter CNNM2 from a twisted towards a flat structure. The Biochemical journal 44 25184538
2016 Human CNNM2 is not a Mg(2+) transporter per se. Pflugers Archiv : European journal of physiology 35 27068403
2018 CNNM2 homozygous mutations cause severe refractory hypomagnesemia, epileptic encephalopathy and brain malformations. European journal of medical genetics 27 30026055
2013 Effects of a novel schizophrenia risk variant rs7914558 at CNNM2 on brain structure and attributional style. The British journal of psychiatry : the journal of mental science 26 24311551
2021 Cyclin M2 (CNNM2) knockout mice show mild hypomagnesaemia and developmental defects. Scientific reports 25 33859252
2010 Splice-variant 1 of the ancient domain protein 2 (ACDP2) complements the magnesium-deficient growth phenotype of Salmonella enterica sv. typhimurium strain MM281. Magnesium research 22 20519162
2020 Studies in Zebrafish Demonstrate That CNNM2 and NT5C2 Are Most Likely the Causal Genes at the Blood Pressure-Associated Locus on Human Chromosome 10q24.32. Frontiers in cardiovascular medicine 19 32984406
2021 The phenotypic and genetic spectrum of patients with heterozygous mutations in cyclin M2 (CNNM2). Human mutation 18 33600043
2020 Novel variant in the CNNM2 gene associated with dominant hypomagnesemia. PloS one 15 32997713
2023 Decreased CNNM2 expression in prefrontal cortex affects sensorimotor gating function, cognition, dendritic spine morphogenesis and risk of schizophrenia. Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology 13 37715107
2012 Purification, crystallization and preliminary crystallographic analysis of the CBS-domain pair of cyclin M2 (CNNM2). Acta crystallographica. Section F, Structural biology and crystallization communications 12 23027747
2022 Novel CNNM2 Mutation Responsible for Autosomal-Dominant Hypomagnesemia With Seizure. Frontiers in genetics 9 35846113
2021 Downregulation by CNNM2 of ATP5MD expression in the 10q24.32 schizophrenia-associated locus involved in impaired ATP production and neurodevelopment. NPJ schizophrenia 7 34021155
2021 Case Report: CNNM2 Mutations Cause Damaged Brain Development and Intractable Epilepsy in a Patient Without Hypomagnesemia. Frontiers in genetics 7 34490037
2018 Associations between polymorphisms of the CXCL12 and CNNM2 gene and hypertension risk: A case-control study. Gene 7 30180964
2022 Rare hypomagnesemia, seizures, and mental retardation in a 4-month-old patient caused by novel CNNM2 mutation Tyr189Cys: Genetic analysis and review. Molecular genetics & genomic medicine 6 35170241
2022 The p.Pro482Ala Variant in the CNNM2 Gene Causes Severe Hypomagnesemia Amenable to Treatment with Spironolactone. International journal of molecular sciences 5 35806288
2023 [Analysis of CNNM2 gene variant in a child with Hypomagnesemia, seizures, and mental retardation syndrome]. Zhonghua yi xue yi chuan xue za zhi = Zhonghua yixue yichuanxue zazhi = Chinese journal of medical genetics 3 37532502
2024 Hypomagnesaemia with varying degrees of extrarenal symptoms as a consequence of heterozygous CNNM2 variants. Scientific reports 2 38519529
2025 Two novel variants in CNNM2 disrupts magnesium efflux leading to neurodevelopmental disorders. Frontiers in genetics 0 40612795
2025 Novel CNNM2 variant causing hypomagnesemia and early-onset calcium pyrophosphate deposition disease: A case report. Joint bone spine 0 41022172

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