Affinage

CKMT1A

Creatine kinase U-type, mitochondrial · UniProt P12532

Length
417 aa
Mass
47.0 kDa
Annotated
2026-06-09
11 papers in source corpus 5 papers cited in narrative 5 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 4/4 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

CKMT1A is a mitochondrial creatine kinase that participates in the phosphocreatine energy-transfer shuttle linking mitochondrial oxidative phosphorylation to cytosolic ATP replenishment (PMID:28521058). In human brown adipose tissue it is selectively enriched relative to white adipose tissue, where it functions as a modulator of ATP synthase-coupled respiration acting in parallel with UCP1-mediated uncoupled respiration as a distinct energy-expenditure pathway (PMID:27418403). Despite this role in mitochondrial energetics, CKMT1A is not the creatine kinase that governs mitochondrial ATP production through the CKB-AKT-mPTP axis: silencing CKMT1A does not alter sensitivity to F1F0 ATP synthase inhibition, distinguishing it functionally from the cytosolic isoform CKB (PMID:38896801). In hepatocellular carcinoma, CKMT1A acts as the downstream effector of an lncRNA n335586/miR-924 ceRNA circuit, where de-repression of CKMT1A promotes epithelial-mesenchymal transition, migration, and metastasis (PMID:29753758). Beyond these contexts, the enzymatic and structural biology of CKMT1A has not been directly characterized in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 5 steps
  1. 2016 Medium

    Established a tissue-specific physiological role by showing CKMT1A is selectively enriched in brown adipose tissue, positioning it within an ATP synthase-coupled energy-expenditure pathway parallel to UCP1.

    Evidence Comparative quantitative proteomics of primary human brown vs. white adipose tissue

    PMID:27418403

    Open questions at the time
    • No direct enzymatic assay or knockdown/knockout in this study
    • Causal contribution to thermogenic energy expenditure not functionally tested
  2. 2017 Low

    Linked CKMT1A abundance to oxidative-phosphorylation-coupled energy transfer in muscle, supporting its placement in the phosphocreatine shuttle connecting mitochondrial ATP synthesis to cytosolic demand.

    Evidence Reanalysis of proteomic mass spectrometry dataset from broiler pectoralis muscle (high vs. low feed efficiency)

    PMID:28521058

    Open questions at the time
    • Correlative abundance only, no functional assay of CKMT1A
    • No knockdown or rescue to establish causality
  3. 2018 Medium

    Defined a post-transcriptional regulatory circuit and a disease role, identifying CKMT1A as the functional effector of an lncRNA/miRNA ceRNA axis driving cancer cell migration and metastasis.

    Evidence In vitro migration/invasion assays, in vivo metastasis model, and miR-924 binding validation in HCC

    PMID:29753758

    Open questions at the time
    • Mechanism by which CKMT1A promotes EMT not resolved
    • Whether its creatine kinase activity is required for the pro-metastatic effect unknown
  4. 2024 Medium

    Resolved which creatine kinase isoform controls mitochondrial ATP production, showing through a negative result that CKMT1A is dispensable for F1F0 ATP synthase inhibitor sensitivity unlike cytosolic CKB.

    Evidence siRNA silencing of CKMT1A/CKMT1B with cell viability and ATP production readouts

    PMID:38896801

    Open questions at the time
    • Does not address CKMT1A's role in other energetic or signaling contexts
    • Single lab, single cell-model dependency
  5. 2024 Low

    Added a candidate post-translational modification, identifying CKMT1A as an O-GalNAc glycoprotein substrate of GALNT9 in a glycoproteomic screen.

    Evidence Lectin affinity chromatography and LC-MS/MS in SH-SY5Y cells with GALNT9 knockdown

    PMID:38401583

    Open questions at the time
    • No glycosylation site mapping on CKMT1A
    • Functional consequence of CKMT1A glycosylation not tested specifically

Open questions

Synthesis pass · forward-looking unresolved questions
  • The direct enzymatic kinetics, structural organization, and the mechanism by which CKMT1A drives EMT remain unresolved.
  • No reconstituted creatine kinase activity assay for CKMT1A
  • No structural model
  • Connection between energy-transfer role and pro-metastatic function unestablished

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0016740 transferase activity 2
Localization
GO:0005739 mitochondrion 2
Pathway
R-HSA-1430728 Metabolism 2

Evidence

Reading pass · 5 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2016 CKMT1A (along with CKMT1B and CKMT2) is exclusively expressed in human brown adipose tissue (BAT) compared to adjacent white adipose tissue, where it functions as an effective modulator of ATP synthase-coupled respiration, acting in parallel with UCP1-mediated uncoupled respiration as a distinct energy expenditure pathway. Comparative proteotype analysis (quantitative proteomics) of primary human brown vs. white adipose tissue Scientific reports Medium 27418403
2018 LncRNA n335586 promotes HCC cell migration and invasion by competitively binding miR-924, thereby de-repressing CKMT1A expression; CKMT1A is the functional downstream effector of this axis in driving epithelial-mesenchymal transition and metastasis. In vitro migration/invasion assays, in vivo metastasis model, competitive endogenous RNA (ceRNA) mechanistic studies with miR-924 binding validation Cancer letters Medium 29753758
2017 CKMT1A protein is up-regulated 7.8-fold in breast muscle of high feed efficiency broilers compared to low feed efficiency broilers, indicating CKMT1A participates in the mitochondrial creatine kinase energy transfer system linking oxidative phosphorylation to cytosolic ATP replenishment via phosphocreatine. Proteomic analysis (re-examination of mass spectrometry dataset) of broiler pectoralis muscle Poultry science Low 28521058
2024 Silencing CKMT1A (or CKMT1B) does not lead to loss of sensitivity to F1F0 ATP synthase inhibition, unlike CKB silencing; this negative result indicates CKMT1A is not the creatine kinase responsible for regulating mitochondrial ATP production via the CKB-AKT-mPTP axis. siRNA silencing of CKMT1A/CKMT1B in cells relying on mitochondrial F1F0 ATP synthase, cell viability and ATP production assays Advanced science (Weinheim, Baden-Wurttemberg, Germany) Medium 38896801
2024 CKMT1A was identified as a glycoprotein substrate of GALNT9 (polypeptide N-acetylgalactosamine transferase 9), detected by lectin affinity chromatography and LC-MS/MS as carrying GalNAc O-glycosylation; GALNT9 deficiency is associated with mitochondrial dysfunction including increased ROS and mPTP opening. Lectin affinity chromatography purification of GalNAc-exposing glycoproteins followed by LC-MS/MS identification in SH-SY5Y cells with GALNT9 siRNA knockdown International journal of biological macromolecules Low 38401583

Source papers

Stage 0 corpus · 11 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2018 LncRNA n335586/miR-924/CKMT1A axis contributes to cell migration and invasion in hepatocellular carcinoma cells. Cancer letters 62 29753758
2016 Proteomic Analysis of Human Brown Adipose Tissue Reveals Utilization of Coupled and Uncoupled Energy Expenditure Pathways. Scientific reports 61 27418403
2017 Progesterone signalling in broiler skeletal muscle is associated with divergent feed efficiency. BMC systems biology 29 28235404
2020 The Effects of Early-Onset Pre-Eclampsia on Placental Creatine Metabolism in the Third Trimester. International journal of molecular sciences 15 31991880
2017 Enhanced expression of proteins involved in energy production and transfer in breast muscle of pedigree male broilers exhibiting high feed efficiency. Poultry science 14 28521058
2024 CKB Promotes Mitochondrial ATP Production by Suppressing Permeability Transition Pore. Advanced science (Weinheim, Baden-Wurttemberg, Germany) 13 38896801
2024 Deficiency of polypeptide N-acetylgalactosamine transferase 9 contributes to a risk for Parkinson's disease via mitochondrial dysfunctions. International journal of biological macromolecules 6 38401583
2022 An integrative pan-cancer analysis of molecular characteristics and oncogenic role of mitochondrial creatine kinase 1A (CKMT1A) in human tumors. Scientific reports 6 35705641
2021 Detection of VAR2CSA-Captured Colorectal Cancer Cells from Blood Samples by Real-Time Reverse Transcription PCR. Cancers 6 34884994
2025 Refining the detection of complex rearrangements in 15q15.3 region involving the STRC gene in hereditary hearing loss patients. Journal of human genetics 2 40341240
2026 A Mitochondrial Plasma Proteomic Signature Identifies Metastatic Chromophobe Renal Cell Carcinoma. Cancers 0 41899633

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