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Showing ITGB3BPCENPR is a alias.

ITGB3BP

Centromere protein R · UniProt Q13352

Length
177 aa
Mass
20.2 kDa
Annotated
2026-06-10
10 papers in source corpus 10 papers cited in narrative 10 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 6/7 claims corpus-supported (86%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

ITGB3BP (NRIF3/TAP20/CENP-R) is a multifunctional protein operating in two largely distinct arenas: nuclear receptor coregulation and mitotic kinetochore function (PMID:10490654, PMID:36069839). As a nuclear coactivator it localizes to the nucleus and uses a bivalent interaction mechanism—a C-terminal LXXIL module (RID1) as the primary receptor-contact and an N-terminal LXXLL motif (RID2) as a modulatory contact—to engage thyroid hormone receptor and RXR dimers in a ligand-dependent manner, with inter-module spacing governing affinity (PMID:10490654, PMID:11713274). Its C-terminus harbors an autonomous transactivation domain while an N-terminal RepD1 (residues 20–50) confers transrepression that is abolished by Ser28Ala, defining this residue as a regulatory phospho-site (PMID:11713274). Pak1 phosphorylates Ser28, enhancing nuclear localization, ERα binding, recruitment to ERα target promoters, and estrogen responsiveness, thereby extending coactivator function to ERα (PMID:18521086); MTA1 binds the N-terminal LXXLL region and represses NRIF3-driven ERE transcription by blocking its chromatin association (PMID:15254226). A separate 30-amino-acid death domain (DD1) drives caspase 2-dependent, mitochondria-involving apoptosis selectively in breast cancer cells (PMID:15082778). In mitosis, ITGB3BP is a constitutive kinetochore component of the CENP-O complex (CENP-O/P/Q/R/U) that regulates kinetochore–microtubule attachment stability; Aurora B phosphorylation weakens its kinetochore localization and disrupts its binding to CENP-U to correct erroneous attachments (PMID:36069839, PMID:28795467), and co-condensation with EB1 via its N-terminal disordered region links the inner kinetochore to dynamic microtubule plus-ends to drive chromosome oscillations (PMID:40349345). Independently, TAP20 acts downstream of PKCθ in endothelial cells, binding the β5 integrin cytoplasmic domain to reduce adhesion and promote migration and tube formation (PMID:10579726), and its protein levels are controlled by MDM2-promoted ubiquitin-mediated degradation (PMID:39674578).

Mechanistic history

Synthesis pass · year-by-year structured walk · 10 steps
  1. 1999 High

    Established ITGB3BP as a nuclear receptor coactivator with specificity, answering whether it acts broadly or selectively across receptors.

    Evidence Yeast two-hybrid, in vitro binding, mutagenesis and transactivation assays mapping a C-terminal LXXIL (RID1) module

    PMID:10490654

    Open questions at the time
    • Did not resolve stoichiometry of receptor-dimer engagement
    • No structural model of RID1 binding
    • Endogenous target genes not defined
  2. 1999 High

    Defined a separate cytoplasmic identity for the same protein, showing it links PKCθ signaling to integrin-dependent endothelial behavior.

    Evidence Coprecipitation with β5 integrin cytoplasmic domain plus adhesion, migration, tube-formation and antibody-blocking assays

    PMID:10579726

    Open questions at the time
    • Molecular basis of integrin-tail binding not mapped
    • Relationship to the nuclear coactivator role unexplained
    • Downstream signaling effectors unidentified
  3. 2001 High

    Resolved how the coregulator engages receptors and how its activity is partitioned into activating and repressing domains, defining Ser28 as a regulatory node.

    Evidence Deletion/mutagenesis mapping of bivalent RID modules, dimerization domain, AD1, and RepD1 with Gal4 reporter assays

    PMID:11713274

    Open questions at the time
    • Kinase responsible for Ser28 phosphorylation not yet identified
    • Physiological context of repression versus activation unclear
  4. 2004 High

    Revealed a coregulatory antagonism, showing MTA1 represses ITGB3BP-driven ER signaling by displacing it from chromatin.

    Evidence Y2H, in vitro and in vivo binding, ChIP, and ERE reporter assays

    PMID:15254226

    Open questions at the time
    • Mechanism of chromatin displacement not structurally defined
    • Generality across other receptor target genes untested
  5. 2004 High

    Identified a pro-apoptotic activity distinct from transcription, defining a death domain that selectively kills breast cancer cells.

    Evidence Domain mapping, caspase inhibitor studies, and mitochondrial permeability assays in cell lines

    PMID:15082778

    Open questions at the time
    • Molecular basis of cell-type selectivity unknown
    • Upstream trigger of DD1-mediated apoptosis unidentified
    • Endogenous relevance versus overexpression unclear
  6. 2008 High

    Connected upstream signaling to coregulator output, showing Pak1 phosphorylation of Ser28 activates ITGB3BP toward ERα.

    Evidence In vitro kinase assay, phospho-mimic/non-phosphorylatable mutants, ChIP, and transactivation assays

    PMID:18521086

    Open questions at the time
    • Interplay between Ser28 activation here and RepD1 repression unresolved
    • Other phospho-regulated receptors not surveyed
  7. 2017 Medium

    Placed ITGB3BP in the constitutive kinetochore CENP-O complex and tested organismal requirement, showing it is dispensable for development but modifies tumor formation.

    Evidence Cenp-r−/− knockout mouse with DMBA/TPA carcinogenesis and histological proliferation/apoptosis analysis

    PMID:28795467

    Open questions at the time
    • Tumor phenotype mechanism inferred from in vivo readout without biochemical dissection
    • Link between kinetochore role and tumorigenesis not defined
  8. 2022 High

    Defined how the kinetochore role is regulated, showing Aurora B phosphorylation disengages CENP-R from CENP-U to correct erroneous attachments.

    Evidence Phospho-mimic mutagenesis, kinetochore localization, CENP-R/CENP-U co-IP, and chromosome segregation assays

    PMID:36069839

    Open questions at the time
    • Structural basis of CENP-R/CENP-U interface not solved
    • Aurora B phospho-sites not enumerated here
  9. 2025 High

    Established a physical mechanism coupling the inner kinetochore to microtubule plus-ends, showing CENP-R co-condenses with EB1 to drive chromosome oscillations.

    Evidence NMR interaction mapping, co-condensation assays, and EB1-binding-defective mutant with live-cell oscillation imaging

    PMID:40349345

    Open questions at the time
    • Regulation of the condensation in vivo not defined
    • Interplay with Aurora B-controlled CENP-U binding unexplored
  10. 2025 Medium

    Identified post-translational control of ITGB3BP abundance and a metabolic/differentiation role in stem cells.

    Evidence Ubiquitination and stability assays, MDM2 interaction, osteogenic and migration assays, Seahorse respiration, and calvarial defect model

    PMID:39674578

    Open questions at the time
    • MDM2-mediated degradation linked indirectly via lncRNA context
    • Single lab, mechanism of mitochondrial enhancement undefined

Open questions

Synthesis pass · forward-looking unresolved questions
  • How the protein's nuclear coregulator, apoptotic, kinetochore, and integrin-signaling roles are coordinated within one cell, and whether they share a common regulatory logic, remains unresolved.
  • No unifying model linking the distinct functional modules
  • Isoform/context determinants of which role is active are unknown

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0098772 molecular function regulator activity 4 GO:0140110 transcription regulator activity 4 GO:0005198 structural molecule activity 2 GO:0008092 cytoskeletal protein binding 1
Localization
GO:0005634 nucleus 2 GO:0005694 chromosome 2 GO:0005886 plasma membrane 1
Pathway
R-HSA-74160 Gene expression (Transcription) 4 R-HSA-1640170 Cell Cycle 3 R-HSA-5357801 Programmed Cell Death 1
Complex memberships
CENP-O complex (CENP-O/P/Q/R/U)kinetochore

Evidence

Reading pass · 10 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1999 NRIF3 (ITGB3BP) localizes to the cell nucleus and acts as a coactivator that specifically interacts with thyroid hormone receptor (TR) and retinoid X receptor (RXR) in a ligand-dependent fashion, but not with retinoic acid receptor, vitamin D receptor, progesterone receptor, glucocorticoid receptor, or estrogen receptor. A novel C-terminal LXXIL module (RID1) mediates the receptor interaction, while an N-terminal LXXLL motif (RID2) plays a minor modulatory role. Yeast two-hybrid, in vitro binding assays, fluorescence microscopy, domain deletion and mutagenesis analyses, cotransfection transactivation assays Molecular and cellular biology High 10490654
2001 NRIF3 employs a bivalent interaction model using both C-terminal RID1 (LXXIL) and N-terminal RID2 (LXXLL) modules to cooperatively interact with TR or RXR dimers; spacing between modules is important for affinity. A dimerization domain was mapped to residues 84–112 (predicted coiled-coil/leucine zipper). An autonomous transactivation domain (AD1) was mapped to the C-terminus, and a repression domain (RepD1) was mapped to residues 20–50 at the N-terminal portion. A single amino acid change Ser28Ala in RepD1 abolished transrepression, suggesting phosphorylation at this site regulates coregulatory function. Deletion and mutagenesis analyses, Gal4 fusion reporter assays, cotransfection assays Molecular and cellular biology High 11713274
1999 TAP20 (ITGB3BP) is a PKCθ-dependent protein in endothelial cells that physically interacts with the β5 integrin cytoplasmic domain. Overexpression of TAP20 decreased cell adhesion, enhanced migration on vitronectin, and promoted tube formation in 3D culture; these effects were prevented by an anti-integrin αvβ5 antibody. TAP20 also decreased focal adhesion formation in αvβ3-deficient cells. Protein coprecipitation, immunoblotting, overexpression with functional adhesion, migration, and tube formation assays, antibody blocking experiments The Journal of cell biology High 10579726
2004 NRIF3 (ITGB3BP) interacts with metastasis-associated protein 1 (MTA1) both in vitro and in vivo; NRIF3 binds to the C-terminal region of MTA1 via its N-terminal LXXLL-containing region. NRIF3 functions as an ER coactivator, associates with endogenous ERα and its target gene promoter chromatin, and MTA1 represses NRIF3-mediated ERE-driven transcription by interfering with NRIF3's chromatin association. Yeast two-hybrid screen, in vitro binding assay, co-immunoprecipitation (in vivo), chromatin immunoprecipitation (ChIP), transactivation reporter assays Molecular and cellular biology High 15254226
2004 NRIF3 (ITGB3BP) and its family members induce rapid apoptosis in breast cancer cells via a novel death domain (DD1) mapped to a 30-amino-acid region. DD1-induced apoptosis proceeds through a caspase 2-mediated pathway involving mitochondrial membrane permeabilization but does not require other caspases. Cytotoxicity is cell type specific, selectively killing breast cancer cells. Expression of NRIF3/DD1 in cell lines, domain deletion/mutagenesis, caspase inhibitor studies, mitochondrial membrane permeability assays, cell viability assays Molecular and cellular biology High 15082778
2008 Pak1 phosphorylates NRIF3 (ITGB3BP) at Serine 28 in vitro and in vivo. Phosphorylation of Ser28 increases NRIF3's co-activator activity, its interaction with ERα, its nuclear localization, and its recruitment to endogenous ERα target gene promoters. A phospho-mimicking mutant (Ser28Glu) phenocopied activated Pak1 in enhancing ERα transactivation and estrogen responsiveness. In vitro kinase assay, co-immunoprecipitation, phospho-mimicking and non-phosphorylatable mutagenesis, transactivation reporter assays, ChIP, subcellular localization imaging Oncogene High 18521086
2022 CENP-R (ITGB3BP) synergizes with CENP-OPQU to regulate kinetochore-microtubule attachment stability and accurate chromosome segregation in mitosis. Aurora B-mediated phosphorylation of CENP-R weakens its kinetochore localization and disrupts its binding with CENP-U, thereby promoting correction of improper kinetochore-microtubule attachments. Phospho-mimicking mutagenesis, kinetochore localization assays, co-immunoprecipitation (CENP-R/CENP-U interaction), chromosome segregation assays, mitosis imaging Journal of molecular cell biology High 36069839
2017 CENP-R (ITGB3BP) is a constitutive kinetochore component throughout the cell cycle in vertebrates and is part of the CENP-O complex (CENP-O/P/Q/R/U). CENP-R-deficient (Cenp-r−/−) mice are viable, indicating it is not essential for normal development, but loss of CENP-R leads to increased early tumor formation and altered apoptosis/proliferation balance in papillomas, suggesting a context-dependent role in cancer progression. Knockout mouse model (Cenp-r−/−), DMBA/TPA chemical carcinogenesis protocol, histological analysis of proliferation and apoptosis markers Cancer science Medium 28795467
2025 CENP-R (ITGB3BP) interacts with EB1 via CENP-R's N-terminal intrinsic disorder region and EB1's end-binding homology domain. EB1 and CENP-R undergo co-condensation (phase separation). An EB1-binding-defective CENP-R mutant perturbs chromosome oscillations, indicating that EB1–CENP-R condensation forms a physical link between the inner kinetochore and dynamic spindle microtubule plus-ends to drive chromosome oscillations in mitosis. NMR interaction mapping, biochemical co-condensation assays, EB1-binding-defective CENP-R mutant expression, live-cell chromosome oscillation imaging Cell reports High 40349345
2025 ITGB3BP protein is subject to ubiquitin-mediated degradation promoted by its interaction with MDM2, as induced by lncRNA NR_045147. ITGB3BP upregulation promotes osteogenic differentiation and migration of periodontal ligament stem cells and enhances mitochondrial respiration. Ubiquitination assay, western blotting for protein stability, osteogenic differentiation assays, migration assays, Seahorse XF mitochondrial respiration analysis, in vivo calvarial defect model Stem cells translational medicine Medium 39674578

Source papers

Stage 0 corpus · 10 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
1999 NRIF3 is a novel coactivator mediating functional specificity of nuclear hormone receptors. Molecular and cellular biology 51 10490654
2004 Metastasis-associated protein 1 interacts with NRIF3, an estrogen-inducible nuclear receptor coregulator. Molecular and cellular biology 36 15254226
1999 Enhancement of endothelial cell migration and in vitro tube formation by TAP20, a novel beta 5 integrin-modulating, PKC theta-dependent protein. The Journal of cell biology 35 10579726
2004 The NRIF3 family of transcriptional coregulators induces rapid and profound apoptosis in breast cancer cells. Molecular and cellular biology 27 15082778
2001 Domain structure of the NRIF3 family of coregulators suggests potential dual roles in transcriptional regulation. Molecular and cellular biology 26 11713274
2008 Serine 28 phosphorylation of NRIF3 confers its co-activator function for estrogen receptor-alpha transactivation. Oncogene 10 18521086
2017 CENP-R acts bilaterally as a tumor suppressor and as an oncogene in the two-stage skin carcinogenesis model. Cancer science 9 28795467
2022 Phosphorylation of CENP-R by Aurora B regulates kinetochore-microtubule attachment for accurate chromosome segregation. Journal of molecular cell biology 8 36069839
2025 LncRNA NR_045147 modulates osteogenic differentiation and migration in PDLSCs via ITGB3BP degradation and mitochondrial dysfunction. Stem cells translational medicine 6 39674578
2025 Condensation-dependent multivalent interactions of EB1 and CENP-R regulate chromosome oscillations in mitosis. Cell reports 1 40349345

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