Affinage

CD4

T-cell surface glycoprotein CD4 · UniProt P01730

Length
458 aa
Mass
51.1 kDa
Annotated
2026-06-09
100 papers in source corpus 9 papers cited in narrative 9 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 6/6 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

CD4 is a transmembrane glycoprotein that acts both as a T-cell co-receptor coupling antigen recognition to intracellular signaling and as the essential cellular receptor for HIV (PMID:6096719, PMID:8575197). As an immune receptor, CD4 functions as an adhesion molecule and signaling co-receptor whose co-receptor activity depends on constitutive association of its cytoplasmic tail with the Src-family tyrosine kinase Lck through Lck's unique N-terminal domain, recruiting Lck to the TCR/CD3 complex; Lck catalytic activity is dispensable for this co-receptor function, consistent with an adapter role (PMID:8575197). Genetic ablation establishes that CD4 is not strictly required for helper T-cell lineage commitment, since CD4-null mice generate functional MHC class II-restricted αβ TCR+ T cells (PMID:8367726). CD4 is the primary specific surface receptor for HIV: anti-CD4 antibodies block syncytia formation and viral entry, and a soluble CD4 ectodomain binds the HIV envelope glycoprotein gp120/gp110 and inhibits virus infectivity, although a secondary CD4-independent entry pathway operates in some non-T cells at high virus doses (PMID:6096719, PMID:3257544, PMID:1974766). HIV downregulates surface CD4 through multiple mechanisms—reduced CD4 mRNA, reduced CD4 protein, and intracellular sequestration of CD4 with viral envelope glycoproteins gp120 and the gp150 precursor (PMID:3095925); a parallel virus-driven program (defined in poxvirus-infected T cells) couples CD4 loss to dissociation of p56lck and lysosomal degradation of CD4 (PMID:7636966). Engagement of CD4 together with the coreceptor CXCR4 by gp120 can also trigger a rapid, caspase- and CD95-independent cell death marked by mitochondrial depolarization and chromatin condensation (PMID:9770524).

Mechanistic history

Synthesis pass · year-by-year structured walk · 8 steps
  1. 1984 High

    Established that CD4 is the specific cell-surface receptor required for HIV entry, defining the molecular basis of viral tropism for helper T cells.

    Evidence Pseudotype VSV infection, syncytia formation, and anti-CD4 monoclonal antibody blocking across HIV isolates

    PMID:6096719

    Open questions at the time
    • Did not resolve the post-binding entry steps or coreceptor requirement
    • Mechanism of infection-induced CD4 surface loss not defined here
  2. 1986 High

    Resolved how HIV infection depletes surface CD4, showing it occurs through reduced CD4 mRNA, reduced protein, and intracellular complexing of CD4 with viral envelope glycoproteins.

    Evidence Metabolic labeling, co-immunoprecipitation, and Northern blot across T-cell lines

    PMID:3095925

    Open questions at the time
    • Did not establish whether env-CD4 complexing causes degradation or retention
    • Relative contribution of each mechanism not quantified
  3. 1988 High

    Showed the CD4 ectodomain alone is sufficient to bind gp120 and neutralize HIV, separating receptor-binding function from the membrane-anchored signaling protein and providing an antiviral strategy.

    Evidence Recombinant soluble CD4 binding assay and viral infectivity inhibition

    PMID:3257544

    Open questions at the time
    • Did not address in vivo efficacy or resistance
    • Structural basis of gp120 binding not defined
  4. 1990 Medium

    Demonstrated that while CD4 is the primary entry receptor, a secondary CD4-independent infection pathway exists in non-T cells at high virus doses.

    Evidence Immunoperoxidase staining of infected fibroblastoid cells with anti-CD4 antibody blocking and CD4 mRNA analysis

    PMID:1974766

    Open questions at the time
    • Receptor or mechanism for CD4-independent entry not identified
    • Single-lab observation
  5. 1993 High

    Tested whether CD4 is essential for T-cell development, showing helper-lineage commitment and MHC class II-restricted function can proceed without CD4.

    Evidence CD4-null mice with Leishmania challenge and IFN-γ measurement

    PMID:8367726

    Open questions at the time
    • Did not define what compensates for CD4 loss
    • Quantitative effects on T-cell efficiency not fully resolved
  6. 1995 Medium

    Linked virus-induced CD4 downregulation to dissociation of p56lck and lysosomal CD4 degradation, mechanistically connecting receptor turnover to signaling decoupling.

    Evidence Flow cytometry, co-immunoprecipitation, kinase assays, and NH4Cl lysosomal inhibition in myxoma virus-infected rabbit T cells

    PMID:7636966

    Open questions at the time
    • Mechanism of Lck dissociation not defined
    • Generalizability to HIV-driven CD4 loss not directly tested
  7. 1996 Medium

    Defined the molecular basis of CD4 co-receptor signaling as Lck recruitment via Lck's N-terminal domain, with kinase activity dispensable, framing Lck as an adapter to the TCR/CD3 complex.

    Evidence Biochemical association studies, domain mutagenesis, and T-cell functional assays (review synthesis)

    PMID:8575197

    Open questions at the time
    • Identity of downstream signaling proteins recruited not resolved
    • Abstract/review-level synthesis limits mechanistic granularity
  8. 1998 Medium

    Showed CD4 with CXCR4 can transduce a gp120-triggered death signal, revealing a signaling/pathological role beyond viral entry and TCR co-reception.

    Evidence CD4/CXCR4 transfectants with flow cytometry, mitochondrial potential and caspase-inhibitor assays

    PMID:9770524

    Open questions at the time
    • Death effector pathway downstream of CD4/CXCR4 not identified
    • Single-lab transfectant model

Open questions

Synthesis pass · forward-looking unresolved questions
  • The structural details of how the CD4 cytoplasmic tail engages and releases Lck during signaling versus virus-induced downregulation remain unresolved.
  • No structural model of the CD4-Lck interface in the corpus
  • Mechanism unifying TCR co-reception and HIV-driven receptor turnover not established

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0001618 virus receptor activity 3 GO:0060089 molecular transducer activity 2 GO:0060090 molecular adaptor activity 1
Localization
GO:0005886 plasma membrane 2
Pathway
R-HSA-1643685 Disease 3 R-HSA-168256 Immune System 2 R-HSA-5357801 Programmed Cell Death 1
Partners
Complex memberships
TCR/CD3 complex

Evidence

Reading pass · 9 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
1984 CD4 (T4 antigen) is an essential and specific cell-surface receptor component for the AIDS retrovirus (HTLV-III/LAV-1). Anti-CD4 monoclonal antibodies blocked syncytia formation and pseudotype infection, and productive HIV infection markedly reduced cell-surface CD4 expression. Pseudotype VSV infection assay, syncytia formation assay, monoclonal antibody blocking experiments Nature High 6096719
1988 A soluble form of CD4 (sCD4) retains the structural and biological properties of cell-surface CD4, binds HIV envelope glycoprotein gp110, and inhibits HIV binding to CD4+ lymphocytes, resulting in striking inhibition of virus infectivity. Recombinant protein expression, binding assay, viral infectivity inhibition assay Nature High 3257544
1986 HIV infection reduces cell-surface CD4 through at least three mechanisms: (1) reduced steady-state CD4 mRNA levels, (2) reduced immunoprecipitable CD4 protein, and (3) intracellular complexing of CD4 with viral envelope glycoproteins gp120 and gp150 precursor within infected cells. Metabolic labeling, co-immunoprecipitation, Northern blot analysis of CD4 mRNA Science High 3095925
1996 CD4 functions as both an adhesion molecule and a signaling co-receptor. Its co-receptor function depends on association with the Src-family tyrosine kinase Lck via Lck's unique N-terminal domain; Lck kinase activity appears dispensable for CD4 co-receptor activity, suggesting Lck may function as an adapter recruiting other signaling proteins to the TCR/CD3 complex. Biochemical association studies, domain mutagenesis, T cell functional assays Current topics in microbiology and immunology Medium 8575197
1995 Myxoma virus infection of rabbit CD4+ T cells causes CD4 downregulation via a protein kinase C-independent pathway, leading to dissociation of p56lck from CD4 and lysosomal degradation of CD4. Total p56lck kinase activity is unaffected, but the amount of p56lck physically associated with CD4 declines in parallel with CD4 loss. Flow cytometry, co-immunoprecipitation, kinase activity assay, NH4Cl lysosomal inhibitor experiments Journal of virology Medium 7636966
1998 CD4 and CXCR4 co-mediate a rapid, CD95-independent cell death in CD4+ T cells upon HIV-1 gp120 engagement. The induced cell death is independent of known caspases, lacks oligonucleosomal DNA fragmentation, and is not propagated via p56lck or Giα, but shows chromatin condensation, membrane inversion, and reduced mitochondrial transmembrane potential. Apoptosis triggered via CXCR4 was inhibited by SDF-1. CD4/CXCR4 transfection experiments, flow cytometry, mitochondrial membrane potential assay, caspase inhibitor experiments Proceedings of the National Academy of Sciences of the United States of America Medium 9770524
1993 CD4 is not strictly required for helper T-cell lineage commitment or peripheral function. CD4-null mice develop functional CD8-negative, αβ TCR+ MHC class II-restricted T cells that produce IFN-γ upon parasite antigen challenge, demonstrating that T lymphocyte lineage commitment can occur independently of CD4 function. CD4 gene knockout (null mutation), Leishmania infection model, MHC class II restriction assay, cytokine (IFN-γ) measurement Science High 8367726
2008 Atlantic salmon CD4-1 and CD4-2 homologues possess conserved Lck-binding motifs in their cytoplasmic domains, consistent with the mammalian CD4 mechanism of coupling to p56lck for TCR signaling. CD4-2 variants have only two extracellular Ig-like domains versus four in CD4-1. cDNA sequencing, synteny analysis, qRT-PCR expression profiling, motif analysis Fish & shellfish immunology Low 18983924
1990 CD4-negative fibroblastoid cells can be productively infected by HIV-1, HIV-2, and SIVagm at higher virus doses, indicating a second CD4-independent pathway of cellular infection. For most lines, anti-CD4 antibodies blocked infection, confirming CD4-receptor-mediated entry as the primary mechanism. Immunoperoxidase staining, anti-CD4 antibody blocking, Northern blot for CD4 mRNA AIDS Medium 1974766

Source papers

Stage 0 corpus · 100 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
1984 The CD4 (T4) antigen is an essential component of the receptor for the AIDS retrovirus. Nature 3268 6096719
2003 Bacteriophage T4 genome. Microbiology and molecular biology reviews : MMBR 628 12626685
1988 A soluble form of CD4 (T4) protein inhibits AIDS virus infection. Nature 552 3257544
1983 Anti-Leu-3/T4 antibodies react with cells of monocyte/macrophage and Langerhans lineage. Journal of immunology (Baltimore, Md. : 1950) 496 6408171
1986 Alterations in T4 (CD4) protein and mRNA synthesis in cells infected with HIV. Science (New York, N.Y.) 369 3095925
2017 CD4 CTL, a Cytotoxic Subset of CD4+ T Cells, Their Differentiation and Function. Frontiers in immunology 356 28280496
2002 Clinical and biologic features of CD4(+)CD56(+) malignancies. Blood 318 11861268
2002 Both CD4(+)CD25(+) and CD4(+)CD25(-) regulatory cells mediate dominant transplantation tolerance. Journal of immunology (Baltimore, Md. : 1950) 286 12023351
1991 Systematic mutation of bacteriophage T4 lysozyme. Journal of molecular biology 282 1942069
1995 Studies on protein stability with T4 lysozyme. Advances in protein chemistry 272 7771320
2023 CD4+ T cell memory. Nature immunology 267 37156885
2009 Plasticity of CD4(+) FoxP3(+) T cells. Current opinion in immunology 263 19500966
1982 T4 endonuclease VII cleaves holliday structures. Cell 259 6288255
1993 Helper T cells without CD4: control of leishmaniasis in CD4-deficient mice. Science (New York, N.Y.) 237 8367726
2003 Structure and morphogenesis of bacteriophage T4. Cellular and molecular life sciences : CMLS 200 14625682
2010 Morphogenesis of the T4 tail and tail fibers. Virology journal 196 21129200
1970 T4 endonuclease involved in repair of DNA. Proceedings of the National Academy of Sciences of the United States of America 180 5275382
2021 CD4+ T cells contribute to neurodegeneration in Lewy body dementia. Science (New York, N.Y.) 179 34648304
2010 Lessons from the lysozyme of phage T4. Protein science : a publication of the Protein Society 173 20095051
1998 CXCR4 and CD4 mediate a rapid CD95-independent cell death in CD4(+) T cells. Proceedings of the National Academy of Sciences of the United States of America 154 9770524
1986 Human T lymphocytes and monocytes bear the same Leu-3(T4) antigen. Journal of immunology (Baltimore, Md. : 1950) 143 3084644
2014 Structure and function of bacteriophage T4. Future microbiology 125 25517898
2004 The bacteriophage T4 DNA injection machine. Current opinion in structural biology 125 15093831
2018 Histone deacetylase function in CD4+ T cells. Nature reviews. Immunology 116 30022149
1975 Effect of salts and polyamines on T4 polynucleotide kinase. Biochemistry 114 164211
2001 Domain structure and mutational analysis of T4 polynucleotide kinase. The Journal of biological chemistry 112 11335730
2017 Engineering of Bacteriophage T4 Genome Using CRISPR-Cas9. ACS synthetic biology 107 28657724
2013 CD4(+) T-cell subsets in transplantation. Immunological reviews 102 23405905
2024 CD4+ T cells in antitumor immunity. Trends in cancer 93 39242276
2010 Structure and assembly of bacteriophage T4 head. Virology journal 92 21129201
2016 Blood pressure regulation by CD4+ lymphocytes expressing choline acetyltransferase. Nature biotechnology 91 27617738
2014 TLR7 induces anergy in human CD4(+) T cells. Nature immunology 91 25401424
1986 Leu-3/T4 expression on epidermal Langerhans cells in normal and diseased skin. The Journal of investigative dermatology 88 3091703
1975 Molecular and genetic recombination of bacteriophage T4. Annual review of genetics 87 1108766
1994 Tail length determination in bacteriophage T4. Virology 83 8122363
1993 Circular permutation of T4 lysozyme. Biochemistry 78 8241117
1980 RNA priming of DNA replication by bacteriophage T4 proteins. The Journal of biological chemistry 78 6243660
1977 DNA packaging and the pathway of bacteriophage T4 head assembly. Proceedings of the National Academy of Sciences of the United States of America 76 269421
1975 Kinetics and specificity of T4 polynucleotide kinase. Biochemistry 76 235284
2010 Transcriptional control in the prereplicative phase of T4 development. Virology journal 74 21029433
2004 Recurrent advanced (T3 or T4) head and neck squamous cell carcinoma: is salvage possible? Archives of otolaryngology--head & neck surgery 74 14732765
2004 The functional domains of bacteriophage t4 terminase. The Journal of biological chemistry 74 15265872
1977 Enzyme associations in T4 phage DNA precursor synthesis. Proceedings of the National Academy of Sciences of the United States of America 67 198773
2003 The tail lysozyme complex of bacteriophage T4. The international journal of biochemistry & cell biology 64 12467643
1995 Evolution of T4-related phages. Virus genes 61 8828153
2023 CD4+ T cells aggravate hemorrhagic brain injury. Science advances 59 37285421
1982 T4 late transcripts are initiated near a conserved DNA sequence. Nature 58 6287296
1974 Mutation to overproduction of bacteriophage T4 gene products. Journal of virology 58 4589857
1991 Supercoiled DNA-directed knotting by T4 topoisomerase. The Journal of biological chemistry 57 1657929
1988 DNA polymerase of bacteriophage T4 is an autogenous translational repressor. Proceedings of the National Academy of Sciences of the United States of America 55 3054876
1979 Purification of gene 41 protein of bacteriophage T4. The Journal of biological chemistry 55 376535
2011 A promiscuous DNA packaging machine from bacteriophage T4. PLoS biology 54 21358801
2010 Transcription of the T4 late genes. Virology journal 52 21029432
2023 Effects of lactate on metabolism and differentiation of CD4+T cells. Molecular immunology 50 36621062
2018 IL-15 regulates susceptibility of CD4+ T cells to HIV infection. Proceedings of the National Academy of Sciences of the United States of America 49 30257946
1995 Multiple initiation mechanisms adapt phage T4 DNA replication to physiological changes during T4's development. FEMS microbiology reviews 48 7669352
2024 CD74 is a functional MIF receptor on activated CD4+ T cells. Cellular and molecular life sciences : CMLS 46 38992165
2008 CD4 homologues in Atlantic salmon. Fish & shellfish immunology 46 18983924
1978 Polynucleotide kinase from a T4 mutant which lacks the 3' phosphatase activity. Nucleic acids research 46 205838
2019 The regulation of CD4+ T cells during malaria. Immunological reviews 45 31674682
2017 NLRX1 Regulates Effector and Metabolic Functions of CD4+ T Cells. Journal of immunology (Baltimore, Md. : 1950) 45 28159898
2023 TLR8 escapes X chromosome inactivation in human monocytes and CD4+ T cells. Biology of sex differences 43 37723501
2010 Structural analysis of bacteriophage T4 DNA replication: a review in the Virology Journal series on bacteriophage T4 and its relatives. Virology journal 43 21129204
2015 Dysregulation of CD4(+) T Cell Subsets in Intracranial Aneurysm. DNA and cell biology 42 26667180
2010 T4 genes in the marine ecosystem: studies of the T4-like cyanophages and their role in marine ecology. Virology journal 41 21029435
2008 T4 endonuclease V: review and application to dermatology. Expert opinion on biological therapy 41 18476794
2012 Splint ligation of RNA with T4 DNA ligase. Methods in molecular biology (Clifton, N.J.) 40 23065567
1994 DNA helicase requirements for DNA replication during bacteriophage T4 infection. Journal of bacteriology 40 8132462
2014 T4 bacteriophage as a phage display platform. Archives of microbiology 39 24828789
2000 DNA polymerase of the T4-related bacteriophages. Progress in nucleic acid research and molecular biology 39 10697407
2021 Dynamic adoption of anergy by antigen-exhausted CD4+ T cells. Cell reports 38 33567282
1998 The proofreading pathway of bacteriophage T4 DNA polymerase. The Journal of biological chemistry 38 9722519
1990 Productive infection of both CD4+ and CD4- human cell lines with HIV-1, HIV-2 and SIVagm. AIDS (London, England) 38 1974766
1973 Transcription units in bacteriophage T4. Journal of virology 38 4591053
2018 Human Extrafollicular CD4+ Th Cells Help Memory B Cells Produce Igs. Journal of immunology (Baltimore, Md. : 1950) 37 30030323
2019 NFAT primes the human RORC locus for RORγt expression in CD4+ T cells. Nature communications 36 31619674
2016 Interaction between ANXA1 and GATA-3 in Immunosuppression of CD4+ T Cells. Mediators of inflammation 36 27833268
2021 CD29 Enriches for Cytotoxic Human CD4+ T Cells. Journal of immunology (Baltimore, Md. : 1950) 33 34782446
2009 Lack of TNFR2 expression by CD4(+) T cells exacerbates experimental colitis. European journal of immunology 33 19551899
1998 T4 DNA ligase synthesizes dinucleoside polyphosphates. FEBS letters 33 9744812
1995 Myxoma virus induces extensive CD4 downregulation and dissociation of p56lck in infected rabbit CD4+ T lymphocytes. Journal of virology 33 7636966
2020 miR-155 indicates the fate of CD4+ T cells. Immunology letters 32 32485191
1997 ADP-ribosylation and early transcription regulation by bacteriophage T4. Advances in experimental medicine and biology 32 9193638
1983 Identification and biosynthesis of the bacteriophage T4 mot regulatory protein. The EMBO journal 32 6354709
2018 CD32 Ligation Promotes the Activation of CD4+ T Cells. Frontiers in immunology 31 30555482
1990 Expression and function of the uvsW gene of bacteriophage T4. Journal of molecular biology 31 2388264
1988 Head structure of bacteriophages T2 and T4. Journal of ultrastructure and molecular structure research 31 3198952
2016 Protein kinase D regulates positive selection of CD4+ thymocytes through phosphorylation of SHP-1. Nature communications 29 27670070
1996 CD4 and signal transduction. Current topics in microbiology and immunology 28 8575197
2021 Bacteriophage T4 Escapes CRISPR Attack by Minihomology Recombination and Repair. mBio 27 34154416
1983 Fate of cloned bacteriophage T4 DNA after phage T4 infection of clone-bearing cells. Journal of molecular biology 25 6355485
1977 Phage T4-modified RNA polymerase transcribes T4 late genes in vitro. Proceedings of the National Academy of Sciences of the United States of America 25 271954
2009 RNA processing and decay in bacteriophage T4. Progress in molecular biology and translational science 24 19215770
2020 Structural basis of superinfection exclusion by bacteriophage T4 Spackle. Communications biology 23 33214665
2002 Making AppDNA using T4 DNA ligase. Bioorganic chemistry 23 12485593
2004 Molecular architecture of bacteriophage T4. Biochemistry. Biokhimiia 22 15627372
1998 Efficiency of T4 gene 60 translational bypassing. Journal of bacteriology 22 9537381
1995 Bacteriophage T4 gene 17 amplification mutants: evidence for initiation by the T4 terminase subunit gp16. Journal of molecular biology 22 7723009
2001 Recognition and specific degradation of bacteriophage T4 mRNAs. Genetics 21 11333214
1989 New CD4(+) cell line susceptible to infection by HIV-1. Journal of medical virology 21 2570823

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