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Showing RAB5IFC20ORF24 is a alias.

RAB5IF

GEL complex subunit OPTI · UniProt Q9BUV8

Length
137 aa
Mass
15.5 kDa
Annotated
2026-06-10
14 papers in source corpus 3 papers cited in narrative 5 extracted findings
Cross-family judge vs UniProt: tie faithfulness: 5/5 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

RAB5IF is a mitochondrial protein that couples mitochondrial respiration and ribosome biogenesis to a SUMO2-dependent signaling axis governing angiogenesis, neuronal resilience, and tumor cell growth (PMID:41390488, PMID:41915731). Mechanistically, RAB5IF sustains the translational efficiency of SUMO2 mRNA, and loss of RAB5IF lowers SUMO2 protein levels by suppressing SUMO2 translation initiation (PMID:41390488, PMID:41915731). The resulting SUMO2 is required for SUMOylation of Gαi1/3 at Lys277, which licenses assembly of TrkB-SUMO2-Gαi1/3 signaling complexes and downstream Akt-mTOR activation in response to VEGF and BDNF (PMID:41390488, PMID:41915731). Through this axis, endothelial RAB5IF is required for physiological and pathological retinal angiogenesis (PMID:41390488), hippocampal RAB5IF supports dendritic branching, synaptic density, and protection against depressive-like behavior (PMID:41915731), and in NSCLC cells RAB5IF promotes proliferation and migration via the AKT-mTOR pathway (PMID:40318299). Across these settings, RAB5IF function is consistently tied to maintenance of mitochondrial function (PMID:41390488, PMID:41915731, PMID:40318299).

Mechanistic history

Synthesis pass · year-by-year structured walk · 4 steps
  1. 2025 High

    Established that RAB5IF acts upstream of SUMO2 at the translational level by linking mitochondrial respiration and ribosome biogenesis to SUMO2 mRNA translation initiation, defining the entry point of its mechanism.

    Evidence Proteomic sequencing, gene silencing, Western blot, and mitochondrial respiration assays in retinal microvascular endothelial cells

    PMID:41390488

    Open questions at the time
    • The molecular mechanism by which RAB5IF selectively controls SUMO2 mRNA translation initiation is not defined
    • Whether RAB5IF directly binds ribosomal components or SUMO2 mRNA is not shown
  2. 2025 High

    Connected the RAB5IF-SUMO2 axis to VEGF signaling by showing SUMO2-dependent SUMOylation of Gαi1/3 at Lys277 and assembly of TrkB-SUMO2-Gαi1/3 complexes are required for pro-angiogenic activity.

    Evidence Endothelial-specific knockout/silencing in mouse retinal angiogenesis models, Gαi1/3 SUMOylation-site mutagenesis, VEGF signaling assays, and co-immunoprecipitation

    PMID:41390488

    Open questions at the time
    • The SUMO E3 ligase mediating Gαi1/3 SUMOylation is not identified
    • How TrkB participates in a VEGF-driven complex is not mechanistically resolved
  3. 2026 High

    Generalized the RAB5IF-SUMO2-Gαi1/3 axis to BDNF/TrkB signaling in neurons, showing it drives Akt-mTOR activation and supports neuronal structure and resilience to depressive stimuli.

    Evidence Neuronal knockdown and conditional knockout, overexpression rescue, SUMOylation-site mutagenesis, co-IP, behavioral and dendritic/synaptic morphology assays in mouse hippocampus

    PMID:41915731

    Open questions at the time
    • Whether mitochondrial dysfunction and impaired SUMO2 translation are independent or sequential contributors to the depressive phenotype is not separated
    • Direct molecular interactions of RAB5IF within mitochondria remain uncharacterized
  4. 2025 Medium

    Extended RAB5IF function to cancer, showing it promotes NSCLC proliferation and migration through the AKT-mTOR pathway while maintaining mitochondrial function.

    Evidence Lentiviral knockdown/overexpression in NSCLC cell lines with viability/proliferation/migration assays, AKT-mTOR Western blots, and nude mouse xenografts

    PMID:40318299

    Open questions at the time
    • Whether the NSCLC effect proceeds through the same SUMO2-Gαi1/3 axis is not directly tested
    • Single-lab study with limited mechanistic depth beyond pathway-level Western blots

Open questions

Synthesis pass · forward-looking unresolved questions
  • How RAB5IF physically achieves selective control of SUMO2 mRNA translation and what its direct molecular interactions are within mitochondria remain unresolved.
  • No direct binding partners or RNA targets of RAB5IF are identified
  • No structural information on RAB5IF is available in the corpus

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0045182 translation regulator activity 2
Localization
GO:0005739 mitochondrion 3
Pathway
R-HSA-162582 Signal Transduction 3 R-HSA-392499 Metabolism of proteins 2

Evidence

Reading pass · 5 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2025 RAB5IF silencing in retinal microvascular endothelial cells impeded mitochondrial respiration and ribosome biogenesis, specifically suppressing SUMO2 mRNA translation initiation and consequently lowering SUMO2 protein levels, defining RAB5IF as an upstream regulator of SUMO2 expression at the translational level. Proteomic sequencing, gene silencing (siRNA/shRNA), Western blot, mitochondrial respiration assay, in vivo retinal angiogenesis models (oxygen-induced retinopathy, laser-induced choroidal neovascularization in mice) Nature Communications High 41390488
2025 RAB5IF is required for physiological retinal vascular development and pathological retinal angiogenesis; endothelial-specific loss of RAB5IF suppressed VEGF signaling through reduction of SUMO2, which is required for SUMOylation of Gαi1/3 at Lys277, and Gαi1/3 SUMOylation is necessary for VEGF-induced signaling and pro-angiogenic activity. In vivo knockout/silencing in mouse retinal angiogenesis models, mutagenesis of Gαi1/3 SUMOylation sites, VEGF signaling assays, co-immunoprecipitation of TrkB-SUMO2-Gαi1/3 complexes Nature Communications High 41390488
2026 In hippocampal neurons, RAB5IF promotes BDNF/TrkB signaling by maintaining translational efficiency of Sumo2 mRNA; RAB5IF silencing or knockout reduces SUMO2 protein, impairs SUMOylation of Gαi1/3 at Lys277, and disrupts formation of TrkB-SUMO2-Gαi1/3 signaling complexes required for downstream Akt-mTOR activation. Neuronal RAB5IF knockdown and conditional knockout in mouse hippocampus, overexpression rescue, site-directed mutagenesis of Gαi1/3 SUMOylation sites, co-immunoprecipitation, BDNF signaling assays, dendritic morphology and synaptic density quantification Science Signaling High 41915731
2026 RAB5IF knockdown or conditional knockout in mouse hippocampus impairs mitochondrial function and dendritic branching/synaptic density in neurons, and induces depressive-like behaviors; conversely, RAB5IF overexpression in hippocampus mitigates depressive phenotype caused by chronic mild stress. Conditional knockout and AAV-mediated overexpression/knockdown in mouse hippocampus, behavioral assays (depressive-like behavior), mitochondrial function assays, dendritic morphology quantification in cultured hippocampal neurons Science Signaling High 41915731
2025 RAB5IF knockdown in NSCLC cell lines inhibited cell viability, proliferation, and migration, and impaired mitochondrial function; overexpression promoted proliferation and migration; these effects were mediated through the AKT-mTOR pathway, confirmed both in vitro and in vivo in xenograft models. Lentiviral knockdown and overexpression in NSCLC cell lines, Western blot (AKT-mTOR pathway), cell viability/proliferation/migration assays, mitochondrial function assays, nude mouse xenograft models Cancer Genetics Medium 40318299

Source papers

Stage 0 corpus · 14 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2017 A novel method of neural differentiation of PC12 cells by using Opti-MEM as a basic induction medium. International journal of molecular medicine 62 29115371
1997 Clinical and laboratory experience with erythrocyte and platelet preparations from a 0.5CPD Erythro-Sol opti system. Vox sanguinis 36 9407638
1989 Murine trophoblast can be killed by allospecific cytotoxic T lymphocytes generated in GIBCO Opti-MEM medium. Journal of reproductive immunology 27 2785595
2019 The Pivotal Role of Long Noncoding RNA RAB5IF in the Proliferation of Hepatocellular Carcinoma Via LGR5 Mediated β-Catenin and c-Myc Signaling. Biomolecules 13 31717443
2023 Optically activated MEK1/2 inhibitors (Opti-MEKi) as potential antimelanoma agents. European journal of medicinal chemistry 5 36924668
1992 Automated blood component preparation with the Opti system: three years' experience. Beitrage zur Infusionstherapie = Contributions to infusion therapy 5 1284683
2022 Opti-4TB: A protocol for a prospective cohort study evaluating the performance of new biomarkers for active tuberculosis outcome prediction. Frontiers in medicine 3 36186786
2025 Rab5if is a potential therapeutic target of NSCLC. Cancer genetics 2 40318299
2025 Endothelial RAB5IF is required for pathological and developmental retinal angiogenesis. Nature communications 1 41390488
2024 OPTI-HEP-D: a protocol for an intervention study comprising screening and linkage to care of people living with hepatitis D in Catalonia. BMJ open 1 39581731
2000 Two different concentrations of Opti-Plus(R) compared for daily protein cleaning of a disposable contact lens. International contact lens clinic (New York, N.Y.) 1 10863135
2026 The protein RAB5IF promotes BDNF signaling by stimulating the SUMOylation of Gαi1/3 to reduce depressive-like behaviors in mice. Science signaling 0 41915731
2026 Real-World Outcomes of Opti-Hep-D: An Innovative, Multicentre and Multidisciplinary Program Improving Hepatitis D Cascade of Care. Liver international : official journal of the International Association for the Study of the Liver 0 42156708
2020 The Case of the Cognitive (Opti)miser: Electrophysiological Correlates of Working Memory Maintenance Predict Demand Avoidance. Journal of cognitive neuroscience 0 32319870

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