Affinage

ARMC1

Armadillo repeat-containing protein 1 · UniProt Q9NVT9

Length
282 aa
Mass
31.3 kDa
Annotated
2026-06-09
48 papers in source corpus 4 papers cited in narrative 4 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 6/6 claims corpus-supported (100%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

ARMC1 is a dual-localized armadillo repeat-containing scaffold protein that partitions between the cytosol and the outer mitochondrial membrane to govern mitochondrial distribution and motility (PMID:31644573, PMID:40203102). It associates with the outer membrane through its carboxy-terminus and behaves as a peripheral component of the MICOS/MIB complex; its loss fragments mitochondria and reduces their motility without disrupting cristae architecture, respiration, or protein content (PMID:31644573). Mechanistically, ARMC1 partitions between two distinct mitochondrial complexes: it is recruited by the trafficking adaptor MIRO into a MIRO–ARMC1–MTFR complex in which ARMC1 mediates assembly and stability of the fission regulator MTFR and antagonizes retrograde mitochondrial movement, while a separate interaction with DNAJC11 facilitates ARMC1 release from mitochondria (PMID:40203102). This DNAJC11-balanced mito-cytoplasmic shuttling sets steady-state mitochondrial positioning, such that ARMC1 deletion causes perinuclear mitochondrial clustering not rescued by disrupting MIRO–MTFR assembly alone, and disruption of the ARMC1–DNAJC11 interaction produces excess mitochondrial ARMC1 with distinct defects (PMID:40203102). Consistent with a role in mitochondrial dynamics, ARMC1 overexpression shifts the fission/fusion balance toward fusion (lowering DRP1, raising OPA1 and MFN2), reduces ROS, and elevates antioxidant proteins in a kidney-cell injury model (PMID:41153008). The C. elegans ortholog ARCP-1 acts as a dendritic scaffold that binds the phosphodiesterase PDE-1 and positions it with CO2 sensors in sensory neurons, shaping behavioral plasticity (PMID:31757604).

Mechanistic history

Synthesis pass · year-by-year structured walk · 4 steps
  1. 2019 Medium

    Establishing where ARMC1 acts and what it does answered whether this armadillo protein is a mitochondrial factor and defined its first functional role in organelle distribution.

    Evidence Subcellular fractionation, reciprocal Co-IP with MICOS/MIB components, and loss-of-function with live-cell imaging in cultured cells

    PMID:31644573

    Open questions at the time
    • Did not define how ARMC1 mechanistically controls mitochondrial motility
    • Role as a peripheral MICOS/MIB component not linked to any enzymatic or assembly activity
    • No partner shown to recruit ARMC1 to the membrane
  2. 2019 Medium

    Characterizing the C. elegans ortholog ARCP-1 revealed a conserved scaffolding logic, showing the protein can spatially organize a signaling enzyme at a defined cellular site.

    Evidence Genetic mapping, live-imaging co-localization, and loss-of-function with behavioral and neuropeptide readouts in C. elegans sensory neurons

    PMID:31757604

    Open questions at the time
    • PDE-1 binding and dendritic scaffolding role not shown to translate to mammalian ARMC1
    • Relationship between neuronal scaffolding function and mitochondrial function unresolved
    • Single-organism ortholog evidence
  3. 2025 High

    Dissecting two distinct ARMC1-containing complexes answered how ARMC1 controls mitochondrial positioning, establishing a MIRO-recruited, MTFR-stabilizing module antagonizing retrograde movement and a DNAJC11-dependent release mechanism that tunes shuttling.

    Evidence Co-IP, ARMC1 knockout with perinuclear-clustering phenotyping, epistasis by selectively disrupting MIRO-MTFR and ARMC1-DNAJC11 interactions, and MTFR protein-stability assays

    PMID:40203102

    Open questions at the time
    • Molecular trigger that switches ARMC1 between the MIRO-MTFR and DNAJC11 complexes is unknown
    • Structural basis of ARMC1-mediated MTFR assembly/stabilization not resolved
    • Mechanism by which DNAJC11 drives ARMC1 release from mitochondria not defined
  4. 2025 Medium

    Linking ARMC1 to fission/fusion balance and oxidative stress connected its scaffolding function to a tissue-level injury context.

    Evidence Lentiviral ARMC1 overexpression in HK-2 cells with measurement of DRP1/OPA1/MFN2, ROS, antioxidant and fibrosis markers, plus renal proteomics in an adenine-nephropathy mouse model

    PMID:41153008

    Open questions at the time
    • No epistasis establishing how ARMC1 lowers DRP1 or raises fusion regulators
    • Causality between ARMC1 and antioxidant/fibrosis changes is correlative
    • Overexpression-based; physiological relevance of endogenous ARMC1 in kidney not tested

Open questions

Synthesis pass · forward-looking unresolved questions
  • How ARMC1's biochemical activity (armadillo-repeat scaffolding) drives complex assembly remains undefined at the structural and switching level.
  • No structure of ARMC1 or its complexes
  • Signal controlling MIRO-MTFR versus DNAJC11 partitioning unknown
  • Whether neuronal scaffolding and mitochondrial roles share a common biochemical mechanism is untested

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060090 molecular adaptor activity 2
Localization
GO:0005739 mitochondrion 2 GO:0005829 cytosol 2
Pathway
R-HSA-1852241 Organelle biogenesis and maintenance 2
Complex memberships
MICOS/MIBMIRO-ARMC1-MTFR

Evidence

Reading pass · 4 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2019 ARMC1 localizes to both the cytosol and mitochondria, where it associates with the outer mitochondrial membrane through its carboxy-terminus, and interacts with components of the MICOS/MIB (mitochondrial intermembrane space bridging) complex. Mitochondria lacking ArmC1 appear fragmented and show reduced motility, but do not show defects in cristae structure, respiration, or protein content, indicating ArmC1 is a peripheral MICOS/MIB component with a role in mitochondrial distribution. Subcellular fractionation, Co-immunoprecipitation, loss-of-function (knockdown/knockout) with live-cell imaging and functional readouts (cristae morphology, respiration, mitochondrial motility) PloS one Medium 31644573
2025 ARMC1 partitions between two distinct mitochondrial protein complexes: (1) a MIRO-ARMC1-MTFR complex, where MIRO recruits ARMC1 which mediates assembly and stability of mitochondrial fission regulator MTFR, and this complex specifically antagonizes retrograde mitochondrial movement; and (2) a complex with DNAJC11, which facilitates ARMC1 release from mitochondria. ARMC1 deletion causes perinuclear mitochondrial clustering that cannot be rescued by disrupting MIRO-MTFR assembly alone, while disrupting the ARMC1-DNAJC11 interaction leads to excessive mitochondrially localized ARMC1 and distinct mitochondrial defects. Thus, ARMC1 mito-cytoplasmic shuttling balanced by DNAJC11 tunes steady-state mitochondrial distributions. Co-immunoprecipitation, ARMC1 deletion with defined phenotypic readouts (perinuclear clustering), epistasis by disrupting specific protein-protein interactions (MIRO-MTFR assembly, ARMC1-DNAJC11 interaction), protein stability assays (MTFR stability dependent on ARMC1) Science advances High 40203102
2025 MSC-conditioned media upregulates ARMC1 protein in TGF-β1-treated kidney cells and in adenine-induced nephropathy mouse renal tissue. ARMC1 overexpression reduces DRP1 (a fission regulator) and enhances OPA1 and MFN2 (fusion regulators), lowers ROS, and boosts mitochondrial bioactivity, suggesting ARMC1 inhibits mitochondrial fission and reduces oxidative stress. ARMC1 overexpression also decreases fibrosis markers and raises antioxidant proteins (NRF2, SOD1, SOD2, CAT). ARMC1 overexpression (lentiviral vector) in HK-2 cells with measurement of mitochondrial dynamics proteins (DRP1, OPA1, MFN2), ROS levels, antioxidant proteins, and fibrosis markers; renal proteomics in mouse model Stem cell research & therapy Medium 41153008
2019 In C. elegans, the ARCP-1 protein (ortholog of ARMC1) is a polymorphic dendritic scaffold protein expressed in sensory neurons that binds the Ca2+-dependent phosphodiesterase PDE-1 and co-localizes PDE-1 with molecular sensors for CO2 at dendritic ends. Reducing ARCP-1 or PDE-1 activity promotes CO2 escape by altering neuropeptide expression in BAG CO2 sensors. Variation in ARCP-1 alters behavioral plasticity in multiple paradigms. Genetic mapping, co-localization (live imaging), loss-of-function with behavioral readouts (CO2 escape), neuropeptide expression analysis Neuron Medium 31757604

Source papers

Stage 0 corpus · 48 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
1998 Characterization of Sfp, a Bacillus subtilis phosphopantetheinyl transferase for peptidyl carrier protein domains in peptide synthetases. Biochemistry 588 9484229
1998 Identification of a Mycobacterium tuberculosis gene cluster encoding the biosynthetic enzymes for assembly of the virulence-conferring siderophore mycobactin. Chemistry & biology 366 9831524
1997 Enterobactin biosynthesis in Escherichia coli: isochorismate lyase (EntB) is a bifunctional enzyme that is phosphopantetheinylated by EntD and then acylated by EntE using ATP and 2,3-dihydroxybenzoate. Biochemistry 194 9214294
2011 Pancreas divisum is not a cause of pancreatitis by itself but acts as a partner of genetic mutations. The American journal of gastroenterology 156 22158025
1998 The nonribosomal peptide synthetase HMWP2 forms a thiazoline ring during biogenesis of yersiniabactin, an iron-chelating virulence factor of Yersinia pestis. Biochemistry 129 9709002
2000 Vibriobactin biosynthesis in Vibrio cholerae: VibH is an amide synthase homologous to nonribosomal peptide synthetase condensation domains. Biochemistry 99 11112537
2021 Environmental Clonal Spread of Azole-Resistant Candida parapsilosis with Erg11-Y132F Mutation Causing a Large Candidemia Outbreak in a Brazilian Cancer Referral Center. Journal of fungi (Basel, Switzerland) 83 33808442
2007 A mechanism-based aryl carrier protein/thiolation domain affinity probe. Journal of the American Chemical Society 72 17469819
1990 Immunoelectron microscopic localization of amyloid beta protein in the diffuse plaques of Alzheimer-type dementia. Brain research 68 2407313
2006 A protein interaction surface in nonribosomal peptide synthesis mapped by combinatorial mutagenesis and selection. Proceedings of the National Academy of Sciences of the United States of America 59 16567620
2000 Expression, purification, and characterization of HMWP2, a 229 kDa, six domain protein subunit of Yersiniabactin synthetase. Biochemistry 58 10769129
1999 Tandem heterocyclization activity of the multidomain 230 kDa HMWP2 subunit of Yersinia pestis yersiniabactin synthetase: interaction of the 1-1382 and 1383-2035 fragments. Biochemistry 42 10529249
2006 Localized protein interaction surfaces on the EntB carrier protein revealed by combinatorial mutagenesis and selection. Journal of the American Chemical Society 41 16925399
2001 The mtaA gene of the myxothiazol biosynthetic gene cluster from Stigmatella aurantiaca DW4/3-1 encodes a phosphopantetheinyl transferase that activates polyketide synthases and polypeptide synthetases. Journal of biochemistry 37 11134965
2007 The hotdog thioesterase EntH (YbdB) plays a role in vivo in optimal enterobactin biosynthesis by interacting with the ArCP domain of EntB. Journal of bacteriology 33 17675380
2021 Single cell RNA-seq reveals genes vital to in vitro fertilized embryos and parthenotes in pigs. Scientific reports 32 34257377
2010 Kinetic and inhibition studies of dihydroxybenzoate-AMP ligase from Escherichia coli. Biochemistry 31 20359185
2001 Yersiniabactin synthetase: probing the recognition of carrier protein domains by the catalytic heterocyclization domains, Cy1 and Cy2, in the chain-initiating HWMP2 subunit. Biochemistry 29 11318656
2004 Kinetic and regiospecific interrogation of covalent intermediates in the nonribosomal peptide synthesis of yersiniabactin. Journal of the American Chemical Society 26 15479080
2021 ARMC Subfamily: Structures, Functions, Evolutions, Interactions, and Diseases. Frontiers in molecular biosciences 25 34912852
2002 Carrier protein recognition in siderophore-producing nonribosomal peptide synthetases. Biochemistry 24 12081492
2019 Armadillo repeat-containing protein 1 is a dual localization protein associated with mitochondrial intermembrane space bridging complex. PloS one 23 31644573
2023 Genome-Wide Association Study to Identify QTL for Carcass Traits in Korean Hanwoo Cattle. Animals : an open access journal from MDPI 22 37685003
2019 Natural Variation in a Dendritic Scaffold Protein Remodels Experience-Dependent Plasticity by Altering Neuropeptide Expression. Neuron 17 31757604
2021 Single-cell RNA-seq reveals mRNAs and lncRNAs important for oocytes in vitro matured in pigs. Reproduction in domestic animals = Zuchthygiene 15 33496347
2016 Intracellular co-localization of the Escherichia coli enterobactin biosynthetic enzymes EntA, EntB, and EntE. Biochemical and biophysical research communications 14 27470582
2004 Gene cloning, expression and functional characterization of a phosphopantetheinyl transferase from Vibrio anguillarum serotype O1. Archives of microbiology 14 15551118
2001 Nonribosomal biosynthesis of microbial chromopeptides. Progress in nucleic acid research and molecular biology 13 11642364
2022 Evidence of an intracellular interaction between the Escherichia coli enzymes EntC and EntB and identification of a potential electrostatic channeling surface. Biochimie 10 35952947
2005 Chemoenzymatic approaches for streamlined detection of active site modifications on thiotemplate assembly lines using mass spectrometry. Biochemistry 8 16245932
2024 Genome-Wide Association Study for Milk Somatic Cell Score in Holstein Friesian Cows in Slovenia. Animals : an open access journal from MDPI 7 39335302
2017 Visualizing the Adenylation Activities and Protein-Protein Interactions of Aryl Acid Adenylating Enzymes. Chembiochem : a European journal of chemical biology 7 28871667
2005 Thioesterase portability and peptidyl carrier protein swapping in yersiniabactin synthetase from Yersinia pestis. Biochemistry 7 15779920
2024 Heat Stress Inhibits Pollen Development by Degrading mRNA Capping Enzyme ARCP1 and ARCP2. Plant, cell & environment 6 39373148
2011 Genetic and biochemical analyses of chromosome and plasmid gene homologues encoding ICL and ArCP domains in Vibrio anguillarum strain 775. Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine 6 21286786
2022 Pan-cancer analyses of Jab1/COPS5 reveal oncogenic role and clinical outcome in human cancer. Heliyon 5 36643321
2025 ARMC1 partitions between distinct complexes and assembles MIRO with MTFR to control mitochondrial distribution. Science advances 4 40203102
2022 The Valuable Role of ARMC1 in Invasive Breast Cancer as a Novel Biomarker. BioMed research international 3 35378785
2022 Selection of a stable reference gene for relative copy number profiling of porcine chromosomal genes using SYBR green qPCR. Animal biotechnology 2 35767335
2018 Challenges of Connecting Chemistry to Pharmacology: Perspectives from Curating the IUPHAR/BPS Guide to PHARMACOLOGY. ACS omega 2 30087946
2025 The enterobactin biosynthetic intermediate 2,3-dihydroxybenzoic acid is a competitive inhibitor of the Escherichia coli isochorismatase EntB. Protein science : a publication of the Protein Society 1 40400396
2021 Analgesic refractory colic pain: Is prolonged conservative management appropriate? The American journal of emergency medicine 1 33618037
2026 Study on biomarkers of homocysteine-induced transformation of vascular smooth muscle cells into foam cells. Scientific reports 0 41644998
2026 Transdiagnostic functional connectome signature of anhedonia relates to neurotransmitter and genetic profiles. Journal of affective disorders 0 41864356
2025 Functional and structural characterization of Stenotrophomonas maltophilia EntB, an unusual form of isochorismatase for siderophore synthesis. Acta crystallographica. Section F, Structural biology communications 0 40464617
2025 Multi-Omic Analysis Identifies Key Genes Driving Testicular Fusion in Spodoptera litura. International journal of molecular sciences 0 40565028
2025 Mesenchymal stem cells inhibit mitochondrial fission by upregulating armadillo repeat containing 1, ameliorating oxidative stress in renal fibrosis. Stem cell research & therapy 0 41153008
2025 Discriminating childhood traumatic experiences by molecular profiles: the case of neglect and sexual abuse. European journal of psychotraumatology 0 41195746

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