Affinage

AMIGO3

Amphoterin-induced protein 3 · UniProt Q86WK7

Length
504 aa
Mass
55.2 kDa
Annotated
2026-06-09
8 papers in source corpus 5 papers cited in narrative 5 extracted findings
Cross-family judge vs UniProt: Affinage preferred faithfulness: 4/5 claims corpus-supported (80%)

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

AMIGO3 is a type I transmembrane protein composed of six leucine-rich repeats flanked by cysteine-rich LRR-N and LRR-C caps and a single immunoglobulin domain, and it acts as a cell adhesion molecule capable of homophilic and heterophilic binding with other AMIGO family members (PMID:12629050). It dimerizes through an LRR-LRR interface, a contact required for proper cell-surface expression and stable folding (PMID:21983541). Functionally, AMIGO3 serves as a co-receptor within the NgR1/p75-TROY inhibitory signaling complex, where it substitutes for LINGO-1, binds NgR1 and p75/TROY, and transduces CNS myelin-derived inhibitory signals through RhoA/ROCK activation to suppress axon growth (PMID:23613963, PMID:34650403). Loss of AMIGO3 disinhibits axon regeneration: shRNA knockdown in primary DRG and retinal neurons promotes neurite outgrowth under myelin-inhibitory conditions (PMID:23613963), and in vivo knockdown in dorsal root ganglion neurons restores NT3-stimulated dorsal column axon regeneration, compound action potential conduction, and sensory-locomotor function (PMID:30013050). AMIGO3 is also upregulated after status convulsion and contributes to myelin sheath damage, with its downregulation relieving myelin ultrastructural impairment via ROCK/RhoA suppression (PMID:34650403).

Mechanistic history

Synthesis pass · year-by-year structured walk · 5 steps
  1. 2003 Medium

    Establishing AMIGO3's domain architecture and adhesive behavior defined it as an LRR/Ig cell adhesion molecule capable of homophilic and heterophilic interactions, framing it as a candidate neuronal surface receptor.

    Evidence Molecular cloning, domain analysis, recombinant ectodomain binding and neurite outgrowth assays in hippocampal neurons

    PMID:12629050

    Open questions at the time
    • Did not identify the in vivo binding partners or downstream signaling
    • Adhesion shown for ectodomains; physiological neuronal role unresolved
  2. 2011 Medium

    Structural work resolved how AMIGO proteins assemble, showing AMIGO3 forms LRR-LRR dimers required for surface expression and folding, explaining a prerequisite for its receptor function.

    Evidence Crystal structure of AMIGO-1 at 2.0 Å with SAXS, light-scattering and interface mutagenesis applied to AMIGO-3

    PMID:21983541

    Open questions at the time
    • AMIGO-3 dimerization inferred from SAXS/modeling, not a direct AMIGO3 crystal structure
    • Did not address heteromeric assembly with NgR1/p75/TROY
  3. 2013 High

    Identifying AMIGO3 as a LINGO-1-substituting co-receptor in the NgR1/p75-TROY complex answered how myelin inhibitory signals are transduced, placing AMIGO3 at the receptor level upstream of RhoA.

    Evidence Reciprocal co-IP in brain lysates and non-neuronal cells, RhoA activation assay, shRNA knockdown with neurite outgrowth in primary DRG and retinal neurons, in vivo lesion expression profiling

    PMID:23613963

    Open questions at the time
    • Stoichiometry and direct binding interface within the complex not defined
    • Whether AMIGO3 binds myelin ligands directly was not established
  4. 2018 High

    In vivo knockdown demonstrated that removing AMIGO3 disinhibits axon regeneration with functional recovery, confirming it is a causally required mediator of growth inhibition rather than a correlate.

    Evidence Non-viral shRNA knockdown in DRG neurons, dorsal column injury model, compound action potential electrophysiology, behavioral testing, Western blot/immunofluorescence

    PMID:30013050

    Open questions at the time
    • Did not dissect the RhoA/ROCK step at molecular resolution in vivo
    • Durability and clinical translatability of the regenerative effect not addressed
  5. 2021 Medium

    Extending AMIGO3 to a seizure context showed it drives myelin sheath damage via ROCK/RhoA, generalizing its inhibitory signaling role beyond traumatic axon injury to demyelinating pathology.

    Evidence Kainic acid status convulsion model in immature mice, shRNA knockdown, Western blot for MBP and ROCK/RhoA components, TEM of myelin ultrastructure

    PMID:34650403

    Open questions at the time
    • Single lab, single publication
    • Cell type driving the effect (neuron vs oligodendrocyte) not resolved

Open questions

Synthesis pass · forward-looking unresolved questions
  • The direct molecular ligand sensed by the AMIGO3-containing receptor complex and the structural basis of AMIGO3 incorporation into the NgR1/p75-TROY assembly remain undefined.
  • No direct AMIGO3-myelin ligand interaction characterized
  • No structure of the AMIGO3-containing receptor complex
  • Whether AMIGO3 substitution for LINGO-1 is regulated transcriptionally or post-translationally is unknown

Mechanism profile

Synthesis pass · controlled-vocabulary classification · explore literature graph →
Molecular activity
GO:0060089 molecular transducer activity 1 GO:0098631 cell adhesion mediator activity 1 GO:0098772 molecular function regulator activity 1
Localization
GO:0005886 plasma membrane 2
Pathway
R-HSA-1266738 Developmental Biology 2 R-HSA-162582 Signal Transduction 2
Complex memberships
NgR1/p75-TROY inhibitory receptor complex

Evidence

Reading pass · 5 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2003 AMIGO3 is a type I transmembrane protein with six leucine-rich repeats (LRRs) flanked by cysteine-rich LRR N- and C-terminal domains and one immunoglobulin domain; AMIGO family members engage in homophilic and heterophilic binding with each other, functioning as cell adhesion molecules. Molecular cloning, domain structure analysis, recombinant ectodomain binding assays, neurite outgrowth assays in hippocampal neurons The Journal of cell biology Medium 12629050
2011 AMIGO-3 (along with AMIGO-1 and AMIGO-2) forms dimers through LRR-LRR interfaces, as inferred from the crystal structure of AMIGO-1 and small-angle X-ray scattering (SAXS) data on AMIGO-3; dimerization is necessary for proper cell-surface expression and likely stable folding in the ER. Crystal structure of AMIGO-1 at 2.0 Å resolution, SAXS data on AMIGO-3, static light-scattering, mutagenesis of dimerization interface Journal of molecular biology Medium 21983541
2013 AMIGO3 acts as a co-receptor in the NgR1/p75-TROY inhibitory signaling complex, substituting for LINGO-1; AMIGO3 interacts physically with NgR1 and p75/TROY (demonstrated in non-neuronal cells and brain lysates), mediates RhoA activation in response to CNS myelin, and its knockdown in primary DRG and retinal cultures promotes neurite growth under myelin-inhibitory conditions. Co-immunoprecipitation from brain lysates and non-neuronal cell co-expression, RhoA activation assay, shRNA knockdown with neurite outgrowth assays in primary DRG and retinal neurons, in vivo expression profiling after dorsal column and optic nerve lesion PloS one High 23613963
2018 In vivo shRNA-mediated knockdown of AMIGO3 in dorsal root ganglion neurons (>75% mRNA reduction) disinhibits NT3-stimulated regeneration of spinal cord dorsal column axons, restores compound action potential conduction across the lesion, and improves sensory and locomotor function, confirming AMIGO3's role in mediating axon growth inhibition through the RhoA pathway in vivo. shRNA knockdown via non-viral jetPEI delivery, in vivo dorsal column injury model, electrophysiology (compound action potential), behavioral testing, Western blot and immunofluorescence for AMIGO3 expression Scientific reports High 30013050
2021 AMIGO3 expression is upregulated after status convulsion in immature mice and contributes to myelin sheath damage; downregulation of AMIGO3 alleviates myelin structural impairment (assessed by TEM and myelin basic protein levels) and inhibits the ROCK/RhoA signaling pathway, indicating AMIGO3 signals through ROCK/RhoA to regulate myelination and axon growth after seizure. Kainic acid status convulsion model in immature mice, shRNA knockdown of AMIGO3, Western blot for myelin basic protein and ROCK/RhoA pathway components, transmission electron microscopy of myelin ultrastructure Frontiers in molecular neuroscience Medium 34650403

Source papers

Stage 0 corpus · 8 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2003 AMIGO, a transmembrane protein implicated in axon tract development, defines a novel protein family with leucine-rich repeats. The Journal of cell biology 135 12629050
2013 AMIGO3 is an NgR1/p75 co-receptor signalling axon growth inhibition in the acute phase of adult central nervous system injury. PloS one 31 23613963
2011 Crystal structure and role of glycans and dimerization in folding of neuronal leucine-rich repeat protein AMIGO-1. Journal of molecular biology 25 21983541
2017 LINGO-1 and AMIGO3, potential therapeutic targets for neurological and dysmyelinating disorders? Neural regeneration research 21 28966634
2018 Non-viral-mediated suppression of AMIGO3 promotes disinhibited NT3-mediated regeneration of spinal cord dorsal column axons. Scientific reports 16 30013050
2022 Establishment of an antibody specific for AMIGO2 improves immunohistochemical evaluation of liver metastases and clinical outcomes in patients with colorectal cancer. Diagnostic pathology 13 35094710
2023 Comparative and integrative analysis of transcriptomic and epigenomic-wide DNA methylation changes in African American prostate cancer. Epigenetics 11 37279148
2021 The Role and Mechanism of AMIGO3 in the Formation of Aberrant Neural Circuits After Status Convulsion in Immature Mice. Frontiers in molecular neuroscience 1 34650403

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